Class: ChromatographyConfiguration

A set of parameters that define and control the actions of a chromatography process.

classDiagram class ChromatographyConfiguration click ChromatographyConfiguration href "../ChromatographyConfiguration" Configuration <|-- ChromatographyConfiguration click Configuration href "../Configuration" ChromatographyConfiguration : alternative_identifiers ChromatographyConfiguration : chromatographic_category ChromatographyConfiguration --> "0..1" ChromatographicCategoryEnum : chromatographic_category click ChromatographicCategoryEnum href "../ChromatographicCategoryEnum" ChromatographyConfiguration : description ChromatographyConfiguration : id ChromatographyConfiguration : name ChromatographyConfiguration : ordered_mobile_phases ChromatographyConfiguration --> "*" MobilePhaseSegment : ordered_mobile_phases click MobilePhaseSegment href "../MobilePhaseSegment" ChromatographyConfiguration : stationary_phase ChromatographyConfiguration --> "0..1" StationaryPhaseEnum : stationary_phase click StationaryPhaseEnum href "../StationaryPhaseEnum" ChromatographyConfiguration : temperature ChromatographyConfiguration --> "0..1" QuantityValue : temperature click QuantityValue href "../QuantityValue" ChromatographyConfiguration : type

Inheritance

NamedThing
- InformationObject
  - Configuration
    - ChromatographyConfiguration

Slots

Name	Cardinality and Range	Description	Inheritance
chromatographic_category	0..1 ChromatographicCategoryEnum	The type of chromatography used in a process	direct
ordered_mobile_phases	* MobilePhaseSegment	The solution(s) that moves through a chromatography column	direct
stationary_phase	0..1 StationaryPhaseEnum	The material the stationary phase is comprised of used in chromatography	direct
temperature	0..1 QuantityValue	The value of a temperature measurement or temperature used in a process	direct
id	1 Uriorcurie	A unique identifier for a thing	NamedThing
name	1 String	A human readable label for an entity	NamedThing
description	1 String	a human-readable description of a thing	NamedThing
alternative_identifiers	* Uriorcurie	A list of alternative identifiers for the entity	NamedThing
type	1 Uriorcurie	the class_uri of the class that has been instantiated	NamedThing

Usages

used by	used in	type	used
MassSpectrometry	has_chromatography_configuration	range	ChromatographyConfiguration

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/nmdc/nmdc

Mappings

Mapping Type	Mapped Value
self	nmdc:ChromatographyConfiguration
native	nmdc:ChromatographyConfiguration

LinkML Source

Direct

name: ChromatographyConfiguration
description: A set of parameters that define and control the actions of a chromatography
  process.
notes:
- This class is intended to represent a chromatography method file associated with
  a mass spectrometry process.
from_schema: https://w3id.org/nmdc/nmdc
is_a: Configuration
slots:
- chromatographic_category
- ordered_mobile_phases
- stationary_phase
- temperature
slot_usage:
  name:
    name: name
    domain_of:
    - PersonValue
    - NamedThing
    - Protocol
    required: true
  description:
    name: description
    domain_of:
    - ImageValue
    - NamedThing
    required: true
  id:
    name: id
    domain_of:
    - NamedThing
    structured_pattern:
      syntax: '{id_nmdc_prefix}:chrcon-{id_shoulder}-{id_blade}$'
      interpolated: true
class_uri: nmdc:ChromatographyConfiguration

Induced

name: ChromatographyConfiguration
description: A set of parameters that define and control the actions of a chromatography
  process.
notes:
- This class is intended to represent a chromatography method file associated with
  a mass spectrometry process.
from_schema: https://w3id.org/nmdc/nmdc
is_a: Configuration
slot_usage:
  name:
    name: name
    domain_of:
    - PersonValue
    - NamedThing
    - Protocol
    required: true
  description:
    name: description
    domain_of:
    - ImageValue
    - NamedThing
    required: true
  id:
    name: id
    domain_of:
    - NamedThing
    structured_pattern:
      syntax: '{id_nmdc_prefix}:chrcon-{id_shoulder}-{id_blade}$'
      interpolated: true
attributes:
  chromatographic_category:
    name: chromatographic_category
    description: The type of chromatography used in a process.
    from_schema: https://w3id.org/nmdc/nmdc
    rank: 1000
    alias: chromatographic_category
    owner: ChromatographyConfiguration
    domain_of:
    - ChromatographyConfiguration
    - ChromatographicSeparationProcess
    range: ChromatographicCategoryEnum
  ordered_mobile_phases:
    name: ordered_mobile_phases
    description: The solution(s) that moves through a chromatography column.
    from_schema: https://w3id.org/nmdc/nmdc
    rank: 1000
    list_elements_ordered: true
    alias: ordered_mobile_phases
    owner: ChromatographyConfiguration
    domain_of:
    - ChromatographyConfiguration
    - ChromatographicSeparationProcess
    range: MobilePhaseSegment
    multivalued: true
    inlined: true
    inlined_as_list: true
  stationary_phase:
    name: stationary_phase
    description: The material the stationary phase is comprised of used in chromatography.
    from_schema: https://w3id.org/nmdc/nmdc
    rank: 1000
    alias: stationary_phase
    owner: ChromatographyConfiguration
    domain_of:
    - ChromatographyConfiguration
    - ChromatographicSeparationProcess
    range: StationaryPhaseEnum
  temperature:
    name: temperature
    description: The value of a temperature measurement or temperature used in a process.
    notes:
    - Not to be confused with the MIXS:0000113
    from_schema: https://w3id.org/nmdc/nmdc
    contributors:
    - ORCID:0009-0001-1555-1601
    - ORCID:0000-0002-8683-0050
    rank: 1000
    alias: temperature
    owner: ChromatographyConfiguration
    domain_of:
    - ChromatographyConfiguration
    - SubSamplingProcess
    - StorageProcess
    - ChromatographicSeparationProcess
    - DissolvingProcess
    - ChemicalConversionProcess
    range: QuantityValue
  id:
    name: id
    description: A unique identifier for a thing. Must be either a CURIE shorthand
      for a URI or a complete URI
    from_schema: https://w3id.org/nmdc/nmdc
    rank: 1000
    identifier: true
    alias: id
    owner: ChromatographyConfiguration
    domain_of:
    - NamedThing
    range: uriorcurie
    required: true
    pattern: ^[a-zA-Z0-9][a-zA-Z0-9_\.]+:[a-zA-Z0-9_][a-zA-Z0-9_\-\/\.,]*$
    structured_pattern:
      syntax: '{id_nmdc_prefix}:chrcon-{id_shoulder}-{id_blade}$'
      interpolated: true
  name:
    name: name
    description: A human readable label for an entity
    from_schema: https://w3id.org/nmdc/nmdc
    rank: 1000
    alias: name
    owner: ChromatographyConfiguration
    domain_of:
    - PersonValue
    - NamedThing
    - Protocol
    range: string
    required: true
  description:
    name: description
    description: a human-readable description of a thing
    from_schema: https://w3id.org/nmdc/nmdc
    rank: 1000
    slot_uri: dcterms:description
    alias: description
    owner: ChromatographyConfiguration
    domain_of:
    - ImageValue
    - NamedThing
    range: string
    required: true
  alternative_identifiers:
    name: alternative_identifiers
    description: A list of alternative identifiers for the entity.
    from_schema: https://w3id.org/nmdc/nmdc
    rank: 1000
    alias: alternative_identifiers
    owner: ChromatographyConfiguration
    domain_of:
    - MetaboliteIdentification
    - NamedThing
    range: uriorcurie
    multivalued: true
    pattern: ^[a-zA-Z0-9][a-zA-Z0-9_\.]+:[a-zA-Z0-9_][a-zA-Z0-9_\-\/\.,]*$
  type:
    name: type
    description: the class_uri of the class that has been instantiated
    notes:
    - replaces legacy nmdc:type slot
    - makes it easier to read example data files
    - required for polymorphic MongoDB collections
    examples:
    - value: nmdc:Biosample
    - value: nmdc:Study
    from_schema: https://w3id.org/nmdc/nmdc
    see_also:
    - https://github.com/microbiomedata/nmdc-schema/issues/1048
    - https://github.com/microbiomedata/nmdc-schema/issues/1233
    - https://github.com/microbiomedata/nmdc-schema/issues/248
    rank: 1000
    slot_uri: rdf:type
    designates_type: true
    alias: type
    owner: ChromatographyConfiguration
    domain_of:
    - EukEval
    - FunctionalAnnotationAggMember
    - MobilePhaseSegment
    - PortionOfSubstance
    - MagBin
    - MetaboliteIdentification
    - PeptideQuantification
    - ProteinQuantification
    - GenomeFeature
    - FunctionalAnnotation
    - AttributeValue
    - NamedThing
    - FailureCategorization
    - Protocol
    - CreditAssociation
    - Doi
    range: uriorcurie
    required: true
class_uri: nmdc:ChromatographyConfiguration