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Class: FailureCategorization

URI: nmdc:FailureCategorization

classDiagram class FailureCategorization click FailureCategorization href "../FailureCategorization" FailureCategorization : qc_failure_what FailureCategorization --> "0..1" FailureWhatEnum : qc_failure_what click FailureWhatEnum href "../FailureWhatEnum" FailureCategorization : qc_failure_where FailureCategorization --> "0..1" FailureWhereEnum : qc_failure_where click FailureWhereEnum href "../FailureWhereEnum" FailureCategorization : type

Slots

Name Cardinality and Range Description Inheritance
qc_failure_what 0..1
FailureWhatEnum
Provides a summary about what caused a lab or workflow process to fail direct
qc_failure_where 0..1
FailureWhereEnum
Describes the nmdc schema class that corresonds to where the failure occurred direct
type 1
Uriorcurie
the class_uri of the class that has been instantiated direct

Usages

used by used in type used
NucleotideSequencing has_failure_categorization range FailureCategorization
MassSpectrometry has_failure_categorization range FailureCategorization
Pooling has_failure_categorization range FailureCategorization
Extraction has_failure_categorization range FailureCategorization
LibraryPreparation has_failure_categorization range FailureCategorization
CollectingBiosamplesFromSite has_failure_categorization range FailureCategorization
ProtocolExecution has_failure_categorization range FailureCategorization
SubSamplingProcess has_failure_categorization range FailureCategorization
MixingProcess has_failure_categorization range FailureCategorization
FiltrationProcess has_failure_categorization range FailureCategorization
StorageProcess has_failure_categorization range FailureCategorization
ChromatographicSeparationProcess has_failure_categorization range FailureCategorization
DissolvingProcess has_failure_categorization range FailureCategorization
ChemicalConversionProcess has_failure_categorization range FailureCategorization
MetagenomeAnnotation has_failure_categorization range FailureCategorization
MaterialProcessing has_failure_categorization range FailureCategorization
PlannedProcess has_failure_categorization range FailureCategorization
DataGeneration has_failure_categorization range FailureCategorization
WorkflowExecution has_failure_categorization range FailureCategorization
MetagenomeAssembly has_failure_categorization range FailureCategorization
MetatranscriptomeAssembly has_failure_categorization range FailureCategorization
MetatranscriptomeAnnotation has_failure_categorization range FailureCategorization
MetatranscriptomeExpressionAnalysis has_failure_categorization range FailureCategorization
MagsAnalysis has_failure_categorization range FailureCategorization
MetagenomeSequencing has_failure_categorization range FailureCategorization
ReadQcAnalysis has_failure_categorization range FailureCategorization
ReadBasedTaxonomyAnalysis has_failure_categorization range FailureCategorization
MetabolomicsAnalysis has_failure_categorization range FailureCategorization
MetaproteomicsAnalysis has_failure_categorization range FailureCategorization
NomAnalysis has_failure_categorization range FailureCategorization

Identifier and Mapping Information

Schema Source

Mappings

Mapping Type Mapped Value
self nmdc:FailureCategorization
native nmdc:FailureCategorization

LinkML Source

Direct

name: FailureCategorization
from_schema: https://w3id.org/nmdc/nmdc
slots:
- qc_failure_what
- qc_failure_where
- type
class_uri: nmdc:FailureCategorization

Induced

name: FailureCategorization
from_schema: https://w3id.org/nmdc/nmdc
attributes:
  qc_failure_what:
    name: qc_failure_what
    description: Provides a summary about what caused a lab or workflow process to
      fail
    comments:
    - For example, low read count from a sequencer, malformed fastq files, etc.
    from_schema: https://w3id.org/nmdc/nmdc
    rank: 1000
    alias: qc_failure_what
    owner: FailureCategorization
    domain_of:
    - FailureCategorization
    range: FailureWhatEnum
  qc_failure_where:
    name: qc_failure_where
    description: Describes the nmdc schema class that corresonds to where the failure
      occurred. Most commonly this would be the same as Class that generated the results.
    comments:
    - If the assembly size was too small to proceed to annotation failure_where would
      be MetagenomeAssembly.
    from_schema: https://w3id.org/nmdc/nmdc
    rank: 1000
    alias: qc_failure_where
    owner: FailureCategorization
    domain_of:
    - FailureCategorization
    range: FailureWhereEnum
  type:
    name: type
    description: the class_uri of the class that has been instantiated
    notes:
    - replaces legacy nmdc:type slot
    - makes it easier to read example data files
    - required for polymorphic MongoDB collections
    examples:
    - value: nmdc:Biosample
    - value: nmdc:Study
    from_schema: https://w3id.org/nmdc/nmdc
    see_also:
    - https://github.com/microbiomedata/nmdc-schema/issues/1048
    - https://github.com/microbiomedata/nmdc-schema/issues/1233
    - https://github.com/microbiomedata/nmdc-schema/issues/248
    rank: 1000
    slot_uri: rdf:type
    designates_type: true
    alias: type
    owner: FailureCategorization
    domain_of:
    - EukEval
    - FunctionalAnnotationAggMember
    - MobilePhaseSegment
    - PortionOfSubstance
    - MagBin
    - MetaboliteIdentification
    - PeptideQuantification
    - ProteinQuantification
    - GenomeFeature
    - FunctionalAnnotation
    - AttributeValue
    - NamedThing
    - FailureCategorization
    - Protocol
    - CreditAssociation
    - Doi
    range: uriorcurie
    required: true
class_uri: nmdc:FailureCategorization