Enum: FailureWhereEnum

The permitted values for describing where in the process, either a lab or analysis workflow step, the failure occurred.

URI: FailureWhereEnum

Permissible Values

Value	Meaning	Description
NucleotideSequencing	None	A failure has occurred during nucleotide sequencing, a data generation proces...
MassSpectrometry	None	A failure has occurred during mass spectrometry, a data generation process
Pooling	None	A failure has occurred in pooling, a lab process
Extraction	None	A failure has occurred in extraction, a lab process
LibraryPreparation	None	A failure has occurred in library preparation, a lab process
MetagenomeAssembly	None	A failure has occurred in metagenome assembly, a workflow process
MetatranscriptomeExpressionAnalysis	None	A failure has occurred in metatranscriptome expression analysis, a workflow p...
MagsAnalysis	None	A failure has occurred in binning, a workflow process to generate metagenome-...
ReadQcAnalysis	None	A failure has occurred in read qc, a workflow process
ReadBasedTaxonomyAnalysis	None	A failure has occurred in reads based taxonomy, a workflow process
MetagenomeAnnotation	None	A failure has occurred in annotation, a workflow process
MetatranscriptomeAssembly	None	A failure has occurred in assembly, a workflow process
MetatranscriptomeAnnotation	None	A failure has occurred in annotation, a workflow process
MetabolomicsAnalysis	None	A failure has occurred in analyzing metabolomics data
MetaproteomicsAnalysis	None	A failure has occurred in analyzing metaproteomics data
NomAnalysis	None	A failure has occurred in analyzing NOM data

Slots

Name	Description
qc_failure_where	Describes the nmdc schema class that corresonds to where the failure occurred

Comments

• At Chris' recommendation permissible values for this enumeration are the same as Class names.

Identifier and Mapping Information

Schema Source

• from schema: https://w3id.org/nmdc/nmdc

LinkML Source

name: FailureWhereEnum
description: The permitted values for describing where in the process, either a lab
  or analysis workflow step, the failure occurred.
comments:
- At Chris' recommendation permissible values for this enumeration are the same as
  Class names.
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
permissible_values:
  NucleotideSequencing:
    text: NucleotideSequencing
    description: A failure has occurred during nucleotide sequencing, a data generation
      process.
  MassSpectrometry:
    text: MassSpectrometry
    description: A failure has occurred during mass spectrometry, a data generation
      process.
  Pooling:
    text: Pooling
    description: A failure has occurred in pooling, a lab process.
  Extraction:
    text: Extraction
    description: A failure has occurred in extraction, a lab process.
  LibraryPreparation:
    text: LibraryPreparation
    description: A failure has occurred in library preparation, a lab process.
  MetagenomeAssembly:
    text: MetagenomeAssembly
    description: A failure has occurred in metagenome assembly, a workflow process.
  MetatranscriptomeExpressionAnalysis:
    text: MetatranscriptomeExpressionAnalysis
    description: A failure has occurred in metatranscriptome expression analysis,
      a workflow process.
  MagsAnalysis:
    text: MagsAnalysis
    description: A failure has occurred in binning, a workflow process to generate
      metagenome-assembled genomes (MAGS).
  ReadQcAnalysis:
    text: ReadQcAnalysis
    description: A failure has occurred in read qc, a workflow process.
  ReadBasedTaxonomyAnalysis:
    text: ReadBasedTaxonomyAnalysis
    description: A failure has occurred in reads based taxonomy, a workflow process.
  MetagenomeAnnotation:
    text: MetagenomeAnnotation
    description: A failure has occurred in annotation, a workflow process.
  MetatranscriptomeAssembly:
    text: MetatranscriptomeAssembly
    description: A failure has occurred in assembly, a workflow process.
  MetatranscriptomeAnnotation:
    text: MetatranscriptomeAnnotation
    description: A failure has occurred in annotation, a workflow process.
  MetabolomicsAnalysis:
    text: MetabolomicsAnalysis
    description: A failure has occurred in analyzing metabolomics data.
  MetaproteomicsAnalysis:
    text: MetaproteomicsAnalysis
    description: A failure has occurred in analyzing metaproteomics data.
  NomAnalysis:
    text: NomAnalysis
    description: A failure has occurred in analyzing NOM data.