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Enum: FailureWhereEnum

The permitted values for describing where in the process, either a lab or analysis workflow step, the failure occurred.

URI: FailureWhereEnum

Permissible Values

Value Meaning Description
NucleotideSequencing None A failure has occurred during nucleotide sequencing, a data generation proces...
Pooling None A failure has occurred in pooling, a lab process
Extraction None A failure has occurred in extraction, a lab process
LibraryPreparation None A failure has occurred in library preparation, a lab process
MetagenomeAssembly None A failure has occurred in metagenome assembly, a workflow process
MetatranscriptomeAnalysis None A failure has occurred in metatranscriptome analysis, a workflow process
MagsAnalysis None A failure has occurred in binning, a workflow process to generate metagenome-...
ReadQcAnalysis None A failure has occurred in read qc, a workflow process
ReadBasedTaxonomyAnalysis None A failure has occurred in reads based taxonomy, a workflow process
MetagenomeAnnotation None A failure has occurred in annotation, a workflow process

Slots

Name Description
qc_failure_where Describes the nmdc schema class that corresonds to where the failure occurred

Comments

  • At Chris' recommendation permissible values for this enumeration are the same as Class names.

Identifier and Mapping Information

Schema Source

LinkML Source

name: FailureWhereEnum
description: The permitted values for describing where in the process, either a lab
  or analysis workflow step, the failure occurred.
comments:
- At Chris' recommendation permissible values for this enumeration are the same as
  Class names.
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
permissible_values:
  NucleotideSequencing:
    text: NucleotideSequencing
    description: A failure has occurred during nucleotide sequencing, a data generation
      process.
  Pooling:
    text: Pooling
    description: A failure has occurred in pooling, a lab process.
  Extraction:
    text: Extraction
    description: A failure has occurred in extraction, a lab process.
  LibraryPreparation:
    text: LibraryPreparation
    description: A failure has occurred in library preparation, a lab process.
  MetagenomeAssembly:
    text: MetagenomeAssembly
    description: A failure has occurred in metagenome assembly, a workflow process.
  MetatranscriptomeAnalysis:
    text: MetatranscriptomeAnalysis
    description: A failure has occurred in metatranscriptome analysis, a workflow
      process.
  MagsAnalysis:
    text: MagsAnalysis
    description: A failure has occurred in binning, a workflow process to generate
      metagenome-assembled genomes (MAGS).
  ReadQcAnalysis:
    text: ReadQcAnalysis
    description: A failure has occurred in read qc, a workflow process.
  ReadBasedTaxonomyAnalysis:
    text: ReadBasedTaxonomyAnalysis
    description: A failure has occurred in reads based taxonomy, a workflow process.
  MetagenomeAnnotation:
    text: MetagenomeAnnotation
    description: A failure has occurred in annotation, a workflow process.