Class: FunctionalAnnotationAggMember
URI: nmdc:FunctionalAnnotationAggMember
classDiagram
class FunctionalAnnotationAggMember
click FunctionalAnnotationAggMember href "../FunctionalAnnotationAggMember"
FunctionalAnnotationAggMember : count
FunctionalAnnotationAggMember : gene_function_id
FunctionalAnnotationAggMember : metagenome_annotation_id
FunctionalAnnotationAggMember --> "1" WorkflowExecution : metagenome_annotation_id
click WorkflowExecution href "../WorkflowExecution"
FunctionalAnnotationAggMember : type
Slots
Name | Cardinality and Range | Description | Inheritance |
---|---|---|---|
metagenome_annotation_id | 1 WorkflowExecution |
The identifier for the analysis activity that generated the functional annota... | direct |
gene_function_id | 1 Uriorcurie |
The identifier for the gene function | direct |
count | 1 Integer |
direct | |
type | 1 Uriorcurie |
the class_uri of the class that has been instantiated | direct |
Usages
used by | used in | type | used |
---|---|---|---|
Database | functional_annotation_agg | range | FunctionalAnnotationAggMember |
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/nmdc/nmdc
Mappings
Mapping Type | Mapped Value |
---|---|
self | nmdc:FunctionalAnnotationAggMember |
native | nmdc:FunctionalAnnotationAggMember |
LinkML Source
Direct
name: FunctionalAnnotationAggMember
from_schema: https://w3id.org/nmdc/nmdc
slots:
- metagenome_annotation_id
- gene_function_id
- count
- type
slot_usage:
metagenome_annotation_id:
name: metagenome_annotation_id
domain_of:
- FunctionalAnnotationAggMember
structured_pattern:
syntax: '{id_nmdc_prefix}:(wfmgan|wfmtan)-{id_shoulder}-{id_blade}{id_version}$'
interpolated: true
class_uri: nmdc:FunctionalAnnotationAggMember
Induced
name: FunctionalAnnotationAggMember
from_schema: https://w3id.org/nmdc/nmdc
slot_usage:
metagenome_annotation_id:
name: metagenome_annotation_id
domain_of:
- FunctionalAnnotationAggMember
structured_pattern:
syntax: '{id_nmdc_prefix}:(wfmgan|wfmtan)-{id_shoulder}-{id_blade}{id_version}$'
interpolated: true
attributes:
metagenome_annotation_id:
name: metagenome_annotation_id
description: The identifier for the analysis activity that generated the functional
annotation results, where the analysis activity is an instance of the/an appropriate
subclass of WorkflowExecution
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
alias: metagenome_annotation_id
owner: FunctionalAnnotationAggMember
domain_of:
- FunctionalAnnotationAggMember
range: WorkflowExecution
required: true
structured_pattern:
syntax: '{id_nmdc_prefix}:(wfmgan|wfmtan)-{id_shoulder}-{id_blade}{id_version}$'
interpolated: true
gene_function_id:
name: gene_function_id
description: The identifier for the gene function.
examples:
- value: KEGG.ORTHOLOGY:K00627
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
alias: gene_function_id
owner: FunctionalAnnotationAggMember
domain_of:
- FunctionalAnnotationAggMember
range: uriorcurie
required: true
count:
name: count
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
alias: count
owner: FunctionalAnnotationAggMember
domain_of:
- FunctionalAnnotationAggMember
range: integer
required: true
type:
name: type
description: the class_uri of the class that has been instantiated
notes:
- replaces legacy nmdc:type slot
- makes it easier to read example data files
- required for polymorphic MongoDB collections
examples:
- value: nmdc:Biosample
- value: nmdc:Study
from_schema: https://w3id.org/nmdc/nmdc
see_also:
- https://github.com/microbiomedata/nmdc-schema/issues/1048
- https://github.com/microbiomedata/nmdc-schema/issues/1233
- https://github.com/microbiomedata/nmdc-schema/issues/248
rank: 1000
slot_uri: rdf:type
designates_type: true
alias: type
owner: FunctionalAnnotationAggMember
domain_of:
- EukEval
- FunctionalAnnotationAggMember
- MobilePhaseSegment
- PortionOfSubstance
- MagBin
- MetaboliteIdentification
- PeptideQuantification
- ProteinQuantification
- GenomeFeature
- FunctionalAnnotation
- AttributeValue
- NamedThing
- FailureCategorization
- Protocol
- CreditAssociation
- Doi
range: uriorcurie
required: true
class_uri: nmdc:FunctionalAnnotationAggMember