Class: MetaboliteIdentification
This is used to link a metabolomics analysis workflow to a specific metabolite
URI: nmdc:MetaboliteIdentification
classDiagram
class MetaboliteIdentification
click MetaboliteIdentification href "../MetaboliteIdentification"
MetaboliteIdentification : alternative_identifiers
MetaboliteIdentification : highest_similarity_score
MetaboliteIdentification : metabolite_identified
MetaboliteIdentification --> "0..1" ChemicalEntity : metabolite_identified
click ChemicalEntity href "../ChemicalEntity"
MetaboliteIdentification : type
Slots
Name | Cardinality and Range | Description | Inheritance |
---|---|---|---|
alternative_identifiers | * Uriorcurie |
A list of alternative identifiers for the entity | direct |
highest_similarity_score | 0..1 Float |
direct | |
metabolite_identified | 0..1 ChemicalEntity |
the specific metabolite identifier | direct |
type | 1 Uriorcurie |
the class_uri of the class that has been instantiated | direct |
Usages
used by | used in | type | used |
---|---|---|---|
MetabolomicsAnalysis | has_metabolite_identifications | range | MetaboliteIdentification |
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/nmdc/nmdc
Mappings
Mapping Type | Mapped Value |
---|---|
self | nmdc:MetaboliteIdentification |
native | nmdc:MetaboliteIdentification |
LinkML Source
Direct
name: MetaboliteIdentification
description: This is used to link a metabolomics analysis workflow to a specific metabolite
from_schema: https://w3id.org/nmdc/nmdc
slots:
- alternative_identifiers
- highest_similarity_score
- metabolite_identified
- type
class_uri: nmdc:MetaboliteIdentification
Induced
name: MetaboliteIdentification
description: This is used to link a metabolomics analysis workflow to a specific metabolite
from_schema: https://w3id.org/nmdc/nmdc
attributes:
alternative_identifiers:
name: alternative_identifiers
description: A list of alternative identifiers for the entity.
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
alias: alternative_identifiers
owner: MetaboliteIdentification
domain_of:
- MetaboliteIdentification
- NamedThing
range: uriorcurie
multivalued: true
pattern: ^[a-zA-Z0-9][a-zA-Z0-9_\.]+:[a-zA-Z0-9_][a-zA-Z0-9_\-\/\.,]*$
highest_similarity_score:
name: highest_similarity_score
todos:
- Yuri to fill in description
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
alias: highest_similarity_score
owner: MetaboliteIdentification
domain_of:
- MetaboliteIdentification
range: float
metabolite_identified:
name: metabolite_identified
description: the specific metabolite identifier
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
alias: metabolite_identified
owner: MetaboliteIdentification
domain_of:
- MetaboliteIdentification
range: ChemicalEntity
type:
name: type
description: the class_uri of the class that has been instantiated
notes:
- replaces legacy nmdc:type slot
- makes it easier to read example data files
- required for polymorphic MongoDB collections
examples:
- value: nmdc:Biosample
- value: nmdc:Study
from_schema: https://w3id.org/nmdc/nmdc
see_also:
- https://github.com/microbiomedata/nmdc-schema/issues/1048
- https://github.com/microbiomedata/nmdc-schema/issues/1233
- https://github.com/microbiomedata/nmdc-schema/issues/248
rank: 1000
slot_uri: rdf:type
designates_type: true
alias: type
owner: MetaboliteIdentification
domain_of:
- EukEval
- FunctionalAnnotationAggMember
- MobilePhaseSegment
- PortionOfSubstance
- MagBin
- MetaboliteIdentification
- PeptideQuantification
- ProteinQuantification
- GenomeFeature
- FunctionalAnnotation
- AttributeValue
- NamedThing
- FailureCategorization
- Protocol
- CreditAssociation
- Doi
range: uriorcurie
required: true
class_uri: nmdc:MetaboliteIdentification