Class: OntologyClass

URI: nmdc:OntologyClass

classDiagram class OntologyClass click OntologyClass href "../OntologyClass" NamedThing <|-- OntologyClass click NamedThing href "../NamedThing" OntologyClass <|-- EnvironmentalMaterialTerm click EnvironmentalMaterialTerm href "../EnvironmentalMaterialTerm" OntologyClass <|-- ChemicalEntity click ChemicalEntity href "../ChemicalEntity" OntologyClass <|-- FunctionalAnnotationTerm click FunctionalAnnotationTerm href "../FunctionalAnnotationTerm" OntologyClass : alternative_identifiers OntologyClass : description OntologyClass : id OntologyClass : name OntologyClass : type

Inheritance

NamedThing
- OntologyClass

Slots

Name	Cardinality and Range	Description	Inheritance
id	1 Uriorcurie	A unique identifier for a thing	NamedThing
name	0..1 String	A human readable label for an entity	NamedThing
description	0..1 String	a human-readable description of a thing	NamedThing
alternative_identifiers	* Uriorcurie	A list of alternative identifiers for the entity	NamedThing
type	1 Uriorcurie	the class_uri of the class that has been instantiated	NamedThing

Usages

used by	used in	type	used
ControlledTermValue	term	range	OntologyClass
ControlledIdentifiedTermValue	term	range	OntologyClass

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/nmdc/nmdc

Mappings

Mapping Type	Mapped Value
self	nmdc:OntologyClass
native	nmdc:OntologyClass

LinkML Source

Direct

name: OntologyClass
notes:
- The identifiers for terms from external ontologies can't have their ids constrained
  to the nmdc namespace
from_schema: https://w3id.org/nmdc/nmdc
is_a: NamedThing
slot_usage:
  id:
    name: id
    domain_of:
    - NamedThing
    pattern: ^[a-zA-Z0-9][a-zA-Z0-9_\.]+:[a-zA-Z0-9_][a-zA-Z0-9_\-\/\.,]*$
class_uri: nmdc:OntologyClass

Induced

name: OntologyClass
notes:
- The identifiers for terms from external ontologies can't have their ids constrained
  to the nmdc namespace
from_schema: https://w3id.org/nmdc/nmdc
is_a: NamedThing
slot_usage:
  id:
    name: id
    domain_of:
    - NamedThing
    pattern: ^[a-zA-Z0-9][a-zA-Z0-9_\.]+:[a-zA-Z0-9_][a-zA-Z0-9_\-\/\.,]*$
attributes:
  id:
    name: id
    description: A unique identifier for a thing. Must be either a CURIE shorthand
      for a URI or a complete URI
    from_schema: https://w3id.org/nmdc/nmdc
    rank: 1000
    identifier: true
    alias: id
    owner: OntologyClass
    domain_of:
    - NamedThing
    range: uriorcurie
    required: true
    pattern: ^[a-zA-Z0-9][a-zA-Z0-9_\.]+:[a-zA-Z0-9_][a-zA-Z0-9_\-\/\.,]*$
  name:
    name: name
    description: A human readable label for an entity
    from_schema: https://w3id.org/nmdc/nmdc
    rank: 1000
    alias: name
    owner: OntologyClass
    domain_of:
    - PersonValue
    - NamedThing
    - Protocol
    range: string
  description:
    name: description
    description: a human-readable description of a thing
    from_schema: https://w3id.org/nmdc/nmdc
    rank: 1000
    slot_uri: dcterms:description
    alias: description
    owner: OntologyClass
    domain_of:
    - ImageValue
    - NamedThing
    range: string
  alternative_identifiers:
    name: alternative_identifiers
    description: A list of alternative identifiers for the entity.
    from_schema: https://w3id.org/nmdc/nmdc
    rank: 1000
    alias: alternative_identifiers
    owner: OntologyClass
    domain_of:
    - MetaboliteIdentification
    - NamedThing
    range: uriorcurie
    multivalued: true
    pattern: ^[a-zA-Z0-9][a-zA-Z0-9_\.]+:[a-zA-Z0-9_][a-zA-Z0-9_\-\/\.,]*$
  type:
    name: type
    description: the class_uri of the class that has been instantiated
    notes:
    - replaces legacy nmdc:type slot
    - makes it easier to read example data files
    - required for polymorphic MongoDB collections
    examples:
    - value: nmdc:Biosample
    - value: nmdc:Study
    from_schema: https://w3id.org/nmdc/nmdc
    see_also:
    - https://github.com/microbiomedata/nmdc-schema/issues/1048
    - https://github.com/microbiomedata/nmdc-schema/issues/1233
    - https://github.com/microbiomedata/nmdc-schema/issues/248
    rank: 1000
    slot_uri: rdf:type
    designates_type: true
    alias: type
    owner: OntologyClass
    domain_of:
    - EukEval
    - FunctionalAnnotationAggMember
    - MobilePhaseSegment
    - PortionOfSubstance
    - MagBin
    - MetaboliteIdentification
    - PeptideQuantification
    - ProteinQuantification
    - GenomeFeature
    - FunctionalAnnotation
    - AttributeValue
    - NamedThing
    - FailureCategorization
    - Protocol
    - CreditAssociation
    - Doi
    range: uriorcurie
    required: true
class_uri: nmdc:OntologyClass