Class: Portion of a Substance (PortionOfSubstance)
A portion of any matter of defined composition that has discrete existence, whose origin may be biological, mineral or chemical.
classDiagram
class PortionOfSubstance
click PortionOfSubstance href "../PortionOfSubstance"
PortionOfSubstance : final_concentration
PortionOfSubstance --> "0..1" QuantityValue : final_concentration
click QuantityValue href "../QuantityValue"
PortionOfSubstance : known_as
PortionOfSubstance --> "0..1" ChemicalEntity : known_as
click ChemicalEntity href "../ChemicalEntity"
PortionOfSubstance : mass
PortionOfSubstance --> "0..1" QuantityValue : mass
click QuantityValue href "../QuantityValue"
PortionOfSubstance : sample_state_information
PortionOfSubstance --> "0..1" SampleStateEnum : sample_state_information
click SampleStateEnum href "../SampleStateEnum"
PortionOfSubstance : source_concentration
PortionOfSubstance --> "0..1" QuantityValue : source_concentration
click QuantityValue href "../QuantityValue"
PortionOfSubstance : substance_role
PortionOfSubstance --> "0..1" SubstanceRoleEnum : substance_role
click SubstanceRoleEnum href "../SubstanceRoleEnum"
PortionOfSubstance : type
PortionOfSubstance : volume
PortionOfSubstance --> "0..1" QuantityValue : volume
click QuantityValue href "../QuantityValue"
Slots
Name | Cardinality and Range | Description | Inheritance |
---|---|---|---|
final_concentration | 0..1 QuantityValue |
When solutions A (containing substance X) and B are combined together, this s... | direct |
known_as | 0..1 ChemicalEntity |
direct | |
mass | 0..1 QuantityValue |
A physical quality that inheres in a bearer by virtue of the proportion of th... | direct |
sample_state_information | 0..1 SampleStateEnum |
The chemical phase of a pure sample, or the state of a mixed sample | direct |
source_concentration | 0..1 QuantityValue |
When solutions A (containing substance X) and B are combined together, this s... | direct |
substance_role | 0..1 SubstanceRoleEnum |
The role of a substance in a process | direct |
type | 1 Uriorcurie |
the class_uri of the class that has been instantiated | direct |
volume | 0..1 QuantityValue |
The volume of a substance | direct |
Usages
used by | used in | type | used |
---|---|---|---|
Extraction | substances_used | range | PortionOfSubstance |
StorageProcess | substances_used | range | PortionOfSubstance |
DissolvingProcess | substances_used | range | PortionOfSubstance |
ChemicalConversionProcess | substances_used | range | PortionOfSubstance |
MobilePhaseSegment | substances_used | range | PortionOfSubstance |
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/nmdc/nmdc
Mappings
Mapping Type | Mapped Value |
---|---|
self | nmdc:PortionOfSubstance |
native | nmdc:PortionOfSubstance |
undefined | schema:Substance |
LinkML Source
Direct
name: PortionOfSubstance
description: A portion of any matter of defined composition that has discrete existence,
whose origin may be biological, mineral or chemical.
title: Portion of a Substance
from_schema: https://w3id.org/nmdc/nmdc
mappings:
- schema:Substance
slots:
- final_concentration
- known_as
- mass
- sample_state_information
- source_concentration
- substance_role
- type
- volume
class_uri: nmdc:PortionOfSubstance
Induced
name: PortionOfSubstance
description: A portion of any matter of defined composition that has discrete existence,
whose origin may be biological, mineral or chemical.
title: Portion of a Substance
from_schema: https://w3id.org/nmdc/nmdc
mappings:
- schema:Substance
attributes:
final_concentration:
name: final_concentration
description: When solutions A (containing substance X) and B are combined together,
this slot captures the concentration of X in the combination
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
is_a: concentration
alias: final_concentration
owner: PortionOfSubstance
domain_of:
- PortionOfSubstance
range: QuantityValue
known_as:
name: known_as
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
alias: known_as
owner: PortionOfSubstance
domain_of:
- PortionOfSubstance
range: ChemicalEntity
mass:
name: mass
description: A physical quality that inheres in a bearer by virtue of the proportion
of the bearer's amount of matter.
title: mass
from_schema: https://w3id.org/nmdc/nmdc
exact_mappings:
- PATO:0000125
rank: 1000
alias: mass
owner: PortionOfSubstance
domain_of:
- SubSamplingProcess
- PortionOfSubstance
range: QuantityValue
sample_state_information:
name: sample_state_information
description: The chemical phase of a pure sample, or the state of a mixed sample
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
alias: sample_state_information
owner: PortionOfSubstance
domain_of:
- PortionOfSubstance
range: SampleStateEnum
source_concentration:
name: source_concentration
description: When solutions A (containing substance X) and B are combined together,
this slot captures the concentration of X in solution A
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
is_a: concentration
alias: source_concentration
owner: PortionOfSubstance
domain_of:
- PortionOfSubstance
range: QuantityValue
substance_role:
name: substance_role
description: The role of a substance in a process
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
alias: substance_role
owner: PortionOfSubstance
domain_of:
- PortionOfSubstance
range: SubstanceRoleEnum
type:
name: type
description: the class_uri of the class that has been instantiated
notes:
- replaces legacy nmdc:type slot
- makes it easier to read example data files
- required for polymorphic MongoDB collections
examples:
- value: nmdc:Biosample
- value: nmdc:Study
from_schema: https://w3id.org/nmdc/nmdc
see_also:
- https://github.com/microbiomedata/nmdc-schema/issues/1048
- https://github.com/microbiomedata/nmdc-schema/issues/1233
- https://github.com/microbiomedata/nmdc-schema/issues/248
rank: 1000
slot_uri: rdf:type
designates_type: true
alias: type
owner: PortionOfSubstance
domain_of:
- EukEval
- FunctionalAnnotationAggMember
- MobilePhaseSegment
- PortionOfSubstance
- MagBin
- MetaboliteIdentification
- PeptideQuantification
- ProteinQuantification
- GenomeFeature
- FunctionalAnnotation
- AttributeValue
- NamedThing
- FailureCategorization
- Protocol
- CreditAssociation
- Doi
range: uriorcurie
required: true
volume:
name: volume
description: The volume of a substance.
from_schema: https://w3id.org/nmdc/nmdc
contributors:
- ORCID:0009-0001-1555-1601
- ORCID:0000-0002-8683-0050
rank: 1000
alias: volume
owner: PortionOfSubstance
domain_of:
- Extraction
- SubSamplingProcess
- FiltrationProcess
- MobilePhaseSegment
- PortionOfSubstance
range: QuantityValue
class_uri: nmdc:PortionOfSubstance