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Class: Protocol

URI: nmdc:Protocol

classDiagram class Protocol click Protocol href "../Protocol" Protocol : name Protocol : type Protocol : url

Slots

Name Cardinality and Range Description Inheritance
url 0..1
String		 direct
name 0..1
String		 A human readable label for an entity direct
type 1
Uriorcurie		 the class_uri of the class that has been instantiated direct

Usages

used by used in type used
NucleotideSequencing protocol_link range Protocol
MassSpectrometry protocol_link range Protocol
Pooling protocol_link range Protocol
Extraction protocol_link range Protocol
LibraryPreparation protocol_link range Protocol
CollectingBiosamplesFromSite protocol_link range Protocol
ProtocolExecution protocol_link range Protocol
SubSamplingProcess protocol_link range Protocol
MixingProcess protocol_link range Protocol
FiltrationProcess protocol_link range Protocol
StorageProcess protocol_link range Protocol
ChromatographicSeparationProcess protocol_link range Protocol
DissolvingProcess protocol_link range Protocol
ChemicalConversionProcess protocol_link range Protocol
MetagenomeAnnotation protocol_link range Protocol
MaterialProcessing protocol_link range Protocol
PlannedProcess protocol_link range Protocol
Study protocol_link range Protocol
DataGeneration protocol_link range Protocol
WorkflowExecution protocol_link range Protocol
MetagenomeAssembly protocol_link range Protocol
MetatranscriptomeAssembly protocol_link range Protocol
MetatranscriptomeAnnotation protocol_link range Protocol
MetatranscriptomeAnalysis protocol_link range Protocol
MagsAnalysis protocol_link range Protocol
MetagenomeSequencing protocol_link range Protocol
ReadQcAnalysis protocol_link range Protocol
ReadBasedTaxonomyAnalysis protocol_link range Protocol
MetabolomicsAnalysis protocol_link range Protocol
MetaproteomicsAnalysis protocol_link range Protocol
NomAnalysis protocol_link range Protocol

Identifier and Mapping Information

Schema Source

Mappings

Mapping Type Mapped Value
self nmdc:Protocol
native nmdc:Protocol

LinkML Source

Direct

name: Protocol
from_schema: https://w3id.org/nmdc/nmdc
slots:
- url
- name
- type
class_uri: nmdc:Protocol

Induced

name: Protocol
from_schema: https://w3id.org/nmdc/nmdc
attributes:
  url:
    name: url
    notes:
    - See issue 207 - this clashes with the mixs field
    from_schema: https://w3id.org/nmdc/nmdc
    rank: 1000
    alias: url
    owner: Protocol
    domain_of:
    - ImageValue
    - Protocol
    - DataObject
    range: string
  name:
    name: name
    description: A human readable label for an entity
    from_schema: https://w3id.org/nmdc/nmdc
    rank: 1000
    alias: name
    owner: Protocol
    domain_of:
    - PersonValue
    - NamedThing
    - Protocol
    range: string
  type:
    name: type
    description: the class_uri of the class that has been instantiated
    notes:
    - replaces legacy nmdc:type slot
    - makes it easier to read example data files
    - required for polymorphic MongoDB collections
    examples:
    - value: nmdc:Biosample
    - value: nmdc:Study
    from_schema: https://w3id.org/nmdc/nmdc
    see_also:
    - https://github.com/microbiomedata/nmdc-schema/issues/1048
    - https://github.com/microbiomedata/nmdc-schema/issues/1233
    - https://github.com/microbiomedata/nmdc-schema/issues/248
    rank: 1000
    slot_uri: rdf:type
    designates_type: true
    alias: type
    owner: Protocol
    domain_of:
    - FunctionalAnnotationAggMember
    - MobilePhaseSegment
    - PortionOfSubstance
    - MagBin
    - MetaboliteIdentification
    - PeptideQuantification
    - ProteinQuantification
    - GenomeFeature
    - FunctionalAnnotation
    - AttributeValue
    - NamedThing
    - FailureCategorization
    - Protocol
    - CreditAssociation
    - Doi
    range: uriorcurie
    required: true
class_uri: nmdc:Protocol