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Slot: id

A unique identifier for a thing. Must be either a CURIE shorthand for a URI or a complete URI

URI: nmdc:id

Applicable Classes

Name Description Modifies Slot
ProtocolExecution A PlannedProces that has PlannedProcess parts yes
DataObject An object that primarily consists of symbols that represent information yes
Instrument A material entity that is designed to perform a function in a scientific inve... yes
WorkflowExecution Represents an instance of an execution of a particular workflow no
Extraction A material separation in which a desired component of an input material is se... yes
MassSpectrometryConfiguration A set of parameters that define and control the actions of a mass spectrometr... yes
NomAnalysis yes
ReadQcAnalysis A workflow execution activity that performs quality control on raw Illumina r... yes
MetaproteomicsAnalysis yes
DissolvingProcess A mixing step where a soluble component is mixed with a liquid component yes
ChemicalConversionProcess A process that results in the interconversion of chemical species by a reacti... yes
Pathway A pathway is a sequence of steps/reactions carried out by an organism or comm... no
MassSpectrometry Spectrometry where the sample is converted into gaseous ions which are charac... yes
ChemicalEntity An atom or molecule that can be represented with a chemical formula no
LibraryPreparation yes
MetatranscriptomeAnnotation yes
CalibrationInformation A calibration object that is associated with a process yes
MetagenomeSequencing Initial sequencing activity that precedes any analysis yes
ReadBasedTaxonomyAnalysis A workflow execution activity that performs taxonomy classification using seq... yes
SubSamplingProcess Separating a sample aliquot from the starting material for downstream activit... yes
OntologyClass yes
MetabolomicsAnalysis yes
ChromatographyConfiguration A set of parameters that define and control the actions of a chromatography p... yes
FunctionalAnnotationTerm Abstract grouping class for any term/descriptor that can be applied to a func... no
Site no
MaterialEntity no
ChromatographicSeparationProcess The process of using a selective partitioning of the analyte or interferent b... yes
MagsAnalysis A workflow execution activity that uses computational binning tools to group ... yes
ProcessedSample yes
InformationObject Any data or knowledge that reduces uncertainty or enhances understanding abou... no
Configuration A set of parameters that define the actions of a process and is shared among ... no
OrthologyGroup A set of genes or gene products in which all members are orthologous no
GeneProduct A molecule encoded by a gene that has an evolved function no
NamedThing a databased entity or concept/class no
PlannedProcess no
StorageProcess A planned process with the objective to preserve and protect material entitie... yes
MaterialProcessing A process that takes one or more samples as inputs and generates one or more ... no
EnvironmentalMaterialTerm no
NucleotideSequencing A DataGeneration in which the sequence of DNA or RNA molecules is generated yes
FiltrationProcess The process of segregation of phases; e yes
MetagenomeAssembly A workflow execution activity that converts sequencing reads into an assemble... yes
MixingProcess The combining of components, particles or layers into a more homogeneous stat... yes
MetatranscriptomeAssembly yes
MetagenomeAnnotation A workflow execution activity that provides functional and structural annotat... yes
Pooling physical combination of several instances of like material yes
DataGeneration The methods and processes used to generate omics data from a biosample or org... no
FieldResearchSite A site, outside of a laboratory, from which biosamples may be collected yes
MetatranscriptomeExpressionAnalysis A workflow process that provides expression values and read counts for gene f... yes
Study A study summarizes the overall goal of a research initiative and outlines the... yes
Biosample Biological source material which can be characterized by an experiment yes
CollectingBiosamplesFromSite yes

Properties

  • Range: Uriorcurie

  • Required: True

  • Regex pattern: ^[a-zA-Z0-9][a-zA-Z0-9_\.]+:[a-zA-Z0-9_][a-zA-Z0-9_\-\/\.,]*$

Examples

Value
nmdc:mgmag-00-x012.1_7_c1

Identifier and Mapping Information

Schema Source

LinkML Source

name: id
description: A unique identifier for a thing. Must be either a CURIE shorthand for
  a URI or a complete URI
notes:
- 'abstracted pattern: prefix:typecode-authshoulder-blade(.version)?(_seqsuffix)?'
- a minimum length of 3 characters is suggested for typecodes, but 1 or 2 characters
  will be accepted
- typecodes must correspond 1:1 to a class in the NMDC schema. this will be checked
  via per-class id slot usage assertions
- minting authority shoulders should probably be enumerated and checked in the pattern
examples:
- value: nmdc:mgmag-00-x012.1_7_c1
  description: https://github.com/microbiomedata/nmdc-schema/pull/499#discussion_r1018499248
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
identifier: true
alias: id
domain_of:
- NamedThing
range: uriorcurie
required: true
pattern: ^[a-zA-Z0-9][a-zA-Z0-9_\.]+:[a-zA-Z0-9_][a-zA-Z0-9_\-\/\.,]*$