Slot: organism count (organism_count)
Total cell count of any organism (or group of organisms) per gram, volume or area of sample, should include name of organism followed by count. The method that was used for the enumeration (e.g. qPCR, atp, mpn, etc.) Should also be provided. (example: total prokaryotes; 3.5e7 cells per ml; qpcr)
URI: MIXS:0000103
Inheritance
- core_field
- organism_count
Applicable Classes
Name | Description | Modifies Slot |
---|---|---|
Biosample | Biological source material which can be characterized by an experiment | no |
Properties
-
Range: QuantityValue
-
Multivalued: True
Aliases
- organism count
Examples
Value |
---|
total prokaryotes;3.5e7 cells per milliliter;qPCR |
Identifier and Mapping Information
Annotations
property | value |
---|---|
expected_value | organism name;measurement value;enumeration |
Schema Source
- from schema: https://w3id.org/nmdc/nmdc
LinkML Source
name: organism_count
annotations:
expected_value:
tag: expected_value
value: organism name;measurement value;enumeration
preferred_unit:
tag: preferred_unit
value: number of cells per cubic meter, number of cells per milliliter, number
of cells per cubic centimeter
occurrence:
tag: occurrence
value: m
description: 'Total cell count of any organism (or group of organisms) per gram, volume
or area of sample, should include name of organism followed by count. The method
that was used for the enumeration (e.g. qPCR, atp, mpn, etc.) Should also be provided.
(example: total prokaryotes; 3.5e7 cells per ml; qpcr)'
title: organism count
examples:
- value: total prokaryotes;3.5e7 cells per milliliter;qPCR
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- organism count
rank: 1000
is_a: core field
slot_uri: MIXS:0000103
alias: organism_count
domain_of:
- Biosample
range: QuantityValue
multivalued: true
inlined: true
inlined_as_list: true