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Slot: qc_comment

Slot to store additional comments about laboratory or workflow output. For workflow output it may describe the particular workflow stage that failed. (ie Failed at call-stage due to a malformed fastq file).

URI: nmdc:qc_comment

Applicable Classes

Name Description Modifies Slot
Pooling physical combination of several instances of like material no
MetatranscriptomeAnnotation no
ProtocolExecution A PlannedProces that has PlannedProcess parts no
NomAnalysis no
MetatranscriptomeAnalysis A metatranscriptome activity that e no
WorkflowExecution Represents an instance of an execution of a particular workflow no
ChemicalConversionProcess A process that results in the interconversion of chemical species by a reacti... no
SubSamplingProcess Separating a sample aliquot from the starting material for downstream activit... no
Extraction A material separation in which a desired component of an input material is se... no
MagsAnalysis A workflow execution activity that uses computational binning tools to group ... no
MetaproteomicsAnalysis no
MetatranscriptomeAssembly no
DataGeneration The methods and processes used to generate omics data from a biosample or org... no
PlannedProcess no
MaterialProcessing A process that takes one or more samples as inputs and generates one or more ... no
MetagenomeSequencing Initial sequencing activity that precedes any analysis no
CollectingBiosamplesFromSite no
FiltrationProcess The process of segregation of phases; e no
MetabolomicsAnalysis no
DissolvingProcess A mixing step where a soluble component is mixed with a liquid component no
ChromatographicSeparationProcess The process of using a selective partitioning of the analyte or interferent b... no
MixingProcess The combining of components, particles or layers into a more homogeneous stat... no
MetagenomeAnnotation A workflow execution activity that provides functional and structural annotat... no
LibraryPreparation no
ReadBasedTaxonomyAnalysis A workflow execution activity that performs taxonomy classification using seq... no
MetagenomeAssembly A workflow execution activity that converts sequencing reads into an assemble... no
StorageProcess A planned process with the objective to preserve and protect material entitie... no
NucleotideSequencing A DataGeneration in which the sequence of DNA or RNA molecules is generated no
ReadQcAnalysis A workflow execution activity that performs quality control on raw Illumina r... no
MassSpectrometry Spectrometry where the sample is converted into gaseous ions which are charac... no

Properties

Identifier and Mapping Information

Schema Source

LinkML Source

name: qc_comment
description: Slot to store additional comments about laboratory or workflow output.
  For workflow output it may describe the particular workflow stage that failed. (ie
  Failed at call-stage due to a malformed fastq file).
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
alias: qc_comment
domain_of:
- PlannedProcess
range: string