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Slot: scaf_n50

Given a set of scaffolds, each with its own length, the N50 count is defined as the smallest number of scaffolds whose length sum makes up half of genome size.

URI: nmdc:scaf_n50

Inheritance

Applicable Classes

Name Description Modifies Slot
MetagenomeAssembly A workflow execution activity that converts sequencing reads into an assemble... no
MetatranscriptomeAssembly no

Properties

Identifier and Mapping Information

Schema Source

LinkML Source

name: scaf_n50
description: Given a set of scaffolds, each with its own length, the N50 count is
  defined as the smallest number of scaffolds whose length sum makes up half of genome
  size.
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
is_a: metagenome_assembly_parameter
alias: scaf_n50
domain_of:
- MetagenomeAssembly
- MetatranscriptomeAssembly
range: float