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Slot: type

the class_uri of the class that has been instantiated

URI: rdf:type

Applicable Classes

Name Description Modifies Slot
MetaboliteIdentification This is used to link a metabolomics analysis workflow to a specific metabolit... no
FunctionalAnnotationAggMember no
ProteinQuantification This is used to link a metaproteomics analysis workflow to a specific protein no
ProtocolExecution A PlannedProces that has PlannedProcess parts no
ControlledTermValue A controlled term or class from an ontology no
DataObject An object that primarily consists of symbols that represent information no
Instrument A material entity that is designed to perform a function in a scientific inve... no
WorkflowExecution Represents an instance of an execution of a particular workflow no
Extraction A material separation in which a desired component of an input material is se... no
PortionOfSubstance A portion of any matter of defined composition that has discrete existence, w... no
MassSpectrometryConfiguration A set of parameters that define and control the actions of a mass spectrometr... no
ReadQcAnalysis A workflow execution activity that performs quality control on raw Illumina r... no
MetaproteomicsAnalysis no
MagBin no
CreditAssociation This class supports binding associated researchers to studies no
NomAnalysis no
DissolvingProcess A mixing step where a soluble component is mixed with a liquid component no
GeolocationValue A normalized value for a location on the earth's surface no
PeptideQuantification This is used to link a metaproteomics analysis workflow to a specific peptide... no
FailureCategorization no
ChemicalConversionProcess A process that results in the interconversion of chemical species by a reacti... no
Pathway A pathway is a sequence of steps/reactions carried out by an organism or comm... no
MassSpectrometry Spectrometry where the sample is converted into gaseous ions which are charac... no
ChemicalEntity An atom or molecule that can be represented with a chemical formula no
GenomeFeature A feature localized to an interval along a genome no
LibraryPreparation no
QuantityValue A simple quantity, e no
MetatranscriptomeAnnotation no
MetagenomeSequencing Initial sequencing activity that precedes any analysis no
ReadBasedTaxonomyAnalysis A workflow execution activity that performs taxonomy classification using seq... no
CalibrationInformation A calibration object that is associated with a process no
SubSamplingProcess Separating a sample aliquot from the starting material for downstream activit... no
MobilePhaseSegment A fluid mixture of substances that flow though a chromatographic stationary p... no
OntologyClass no
MetabolomicsAnalysis no
Protocol no
ChromatographyConfiguration A set of parameters that define and control the actions of a chromatography p... no
FunctionalAnnotationTerm Abstract grouping class for any term/descriptor that can be applied to a func... no
Site no
MaterialEntity no
ChromatographicSeparationProcess The process of using a selective partitioning of the analyte or interferent b... no
MagsAnalysis A workflow execution activity that uses computational binning tools to group ... no
ProcessedSample no
InformationObject Any data or knowledge that reduces uncertainty or enhances understanding abou... no
Configuration A set of parameters that define the actions of a process and is shared among ... no
OrthologyGroup A set of genes or gene products in which all members are orthologous no
GeneProduct A molecule encoded by a gene that has an evolved function no
NamedThing a databased entity or concept/class no
Doi A centrally registered identifier symbol used to uniquely identify objects gi... no
PlannedProcess no
PersonValue An attribute value representing a person no
StorageProcess A planned process with the objective to preserve and protect material entitie... no
ImageValue An attribute value representing an image no
MaterialProcessing A process that takes one or more samples as inputs and generates one or more ... no
EnvironmentalMaterialTerm no
AttributeValue The value for any value of a attribute for a sample no
NucleotideSequencing A DataGeneration in which the sequence of DNA or RNA molecules is generated no
FunctionalAnnotation An assignment of a function term (e no
FiltrationProcess The process of segregation of phases; e no
MixingProcess The combining of components, particles or layers into a more homogeneous stat... no
TextValue A basic string value no
MetagenomeAnnotation A workflow execution activity that provides functional and structural annotat... no
MetagenomeAssembly A workflow execution activity that converts sequencing reads into an assemble... no
MetatranscriptomeAssembly no
ControlledIdentifiedTermValue A controlled term or class from an ontology, requiring the presence of term w... no
TimestampValue A value that is a timestamp no
Pooling physical combination of several instances of like material no
DataGeneration The methods and processes used to generate omics data from a biosample or org... no
FieldResearchSite A site, outside of a laboratory, from which biosamples may be collected no
MetatranscriptomeExpressionAnalysis A workflow process that provides expression values and read counts for gene f... no
Study A study summarizes the overall goal of a research initiative and outlines the... no
Biosample Biological source material which can be characterized by an experiment no
EukEval This class contains information pertaining to evaluating if a Metagenome-Asse... no
CollectingBiosamplesFromSite no

Properties

Examples

Value
nmdc:Biosample
nmdc:Study

See Also

Identifier and Mapping Information

Schema Source

LinkML Source

name: type
description: the class_uri of the class that has been instantiated
notes:
- replaces legacy nmdc:type slot
- makes it easier to read example data files
- required for polymorphic MongoDB collections
examples:
- value: nmdc:Biosample
- value: nmdc:Study
from_schema: https://w3id.org/nmdc/nmdc
see_also:
- https://github.com/microbiomedata/nmdc-schema/issues/1048
- https://github.com/microbiomedata/nmdc-schema/issues/1233
- https://github.com/microbiomedata/nmdc-schema/issues/248
rank: 1000
slot_uri: rdf:type
designates_type: true
alias: type
domain_of:
- EukEval
- FunctionalAnnotationAggMember
- MobilePhaseSegment
- PortionOfSubstance
- MagBin
- MetaboliteIdentification
- PeptideQuantification
- ProteinQuantification
- GenomeFeature
- FunctionalAnnotation
- AttributeValue
- NamedThing
- FailureCategorization
- Protocol
- CreditAssociation
- Doi
range: uriorcurie
required: true