Slot: sim_search_meth

Tool used to compare ORFs with database, along with version and cutoffs used

Properties

Range: String

Examples

Value
HMMER3;3.1b2;hmmsearch, cutoff of 50 on score

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/mixs-6-2-rc/mixs_6_2_rc

LinkML Source

name: sim_search_meth
description: Tool used to compare ORFs with database, along with version and cutoffs
  used
title: similarity search method
examples:
- value: HMMER3;3.1b2;hmmsearch, cutoff of 50 on score
in_subset:
- sequencing
from_schema: https://w3id.org/mixs-6-2-rc/mixs_6_2_rc
slot_uri: MIXS:0000063
multivalued: false
alias: sim_search_meth
domain_of:
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- Mims
- Misag
- Miuvig
range: string
pattern: ^([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+);([^\s-]{1,2}|[^\s-]+.+[^\s-]+)$
structured_pattern:
  syntax: ^{software};{version};{parameters}$
  interpolated: true
  partial_match: true