Slot: otu_class_appr

Cutoffs and approach used when clustering species-level OTUs. Note that results from standard 95% ANI / 85% AF clustering should be provided alongside OTUS defined from another set of thresholds, even if the latter are the ones primarily used during the analysis

URI: MIXS:0000085

Properties

• Range: String

Examples

Value
95% ANI;85% AF; greedy incremental clustering

Identifier and Mapping Information

Annotations

property	value
Expected_value	cutoffs and method used

Schema Source

• from schema: https://w3id.org/mixs-6-2-rc/mixs_6_2_rc

LinkML Source

name: otu_class_appr
annotations:
  Expected_value:
    tag: Expected_value
    value: cutoffs and method used
description: Cutoffs and approach used when clustering  species-level  OTUs. Note
  that results from standard 95% ANI / 85% AF clustering should be provided alongside
  OTUS defined from another set of thresholds, even if the latter are the ones primarily
  used during the analysis
title: OTU classification approach
examples:
- value: 95% ANI;85% AF; greedy incremental clustering
in_subset:
- sequencing
from_schema: https://w3id.org/mixs-6-2-rc/mixs_6_2_rc
string_serialization: '{ANI cutoff};{AF cutoff};{clustering method}'
slot_uri: MIXS:0000085
multivalued: false
alias: otu_class_appr
domain_of:
- Miuvig
range: string