Class: Agriculture

agriculture

Inheritance

Agriculture
- AgricultureMIGSEukaryote [ MIGSEukaryote]
- AgricultureMIGSBacteria [ MIGSBacteria]
- AgricultureMIGSPlant [ MIGSPlant]
- AgricultureMIGSVirus [ MIGSVirus]
- AgricultureMIGSOrg [ MIGSOrg]
- AgricultureMIMS [ MIMS]
- AgricultureMIMARKSSpecimen [ MIMARKSSpecimen]
- AgricultureMIMARKSSurvey [ MIMARKSSurvey]
- AgricultureMISAG [ MISAG]
- AgricultureMIMAG [ MIMAG]
- AgricultureMIUVIG [ MIUVIG]

Slots

Name	Cardinality and Range	Description	Inheritance
lat_lon	0..1 String	The geographical origin of the sample as defined by latitude and longitude	direct
depth	0..1 QuantityValue	The vertical distance below local surface, e	direct
alt	0..1 QuantityValue	Altitude is a term used to identify heights of objects such as airplanes, spa...	direct
elev	0..1 QuantityValue	Elevation of the sampling site is its height above a fixed reference point, m...	direct
temp	0..1 QuantityValue	Temperature of the sample at the time of sampling	direct
geo_loc_name	0..1 String	The geographical origin of the sample as defined by the country or sea name f...	direct
collection_date	0..1 Date	The time of sampling, either as an instance (single point in time) or interva...	direct
env_broad_scale	0..1 String	Report the major environmental system the sample or specimen came from	direct
env_local_scale	0..1 String	Report the entity or entities which are in the sample or specimen’s local vic...	direct
env_medium	0..1 String	Report the environmental material(s) immediately surrounding the sample or sp...	direct
plant_growth_med	0..1 PlantGrowthMedEnum	Specification of the media for growing the plants or tissue cultured samples,...	direct
soil_horizon	0..1 SoilHorizonEnum	Specific layer in the land area which measures parallel to the soil surface a...	direct
photosynt_activ	0..* QuantityValue	Measurement of photosythetic activity (i	direct
photosynt_activ_meth	0..* String	Reference or method used in measurement of photosythetic activity	direct
samp_collect_method	0..1 String	The method employed for collecting the sample	direct
enrichment_protocol	0..1 String	The microbiological workflow or protocol followed to test for the presence or...	direct
library_prep_kit	0..1 String	Packaged kits (containing adapters, indexes, enzymes, buffers etc	direct
sequencing_location	0..1 String	The location the sequencing run was performed	direct
soil_temp	0..* String	Temperature of soil at the time of sampling	direct
soil_pH	0..1 Double	The pH of soil at time of sampling	direct
soil_conductivity	0..1 QuantityValue	Conductivity of soil at time of sampling	direct
rel_location	0..1 String	Location of sampled soil to other parts of the farm e	direct
soil_cover	0..1 String	Description of the material covering the sampled soil	direct
porosity	0..1 String	Porosity of deposited sediment is volume of voids divided by the total volume...	direct
texture	0..1 QuantityValue	The relative proportion of different grain sizes of mineral particles in a so...	direct
texture_meth	0..1 String	Reference or method used in determining soil texture	direct
host_symbiont	0..* String	The taxonomic name of the organism(s) found living in mutualistic, commensali...	direct
pres_animal_insect	0..1 String	The type and number of animals or insects present in the sampling space	direct
plant_water_method	0..1 String	Description of the equipment or method used to distribute water to crops	direct
anim_water_method	0..* String	Description of the equipment or method used to distribute water to livestock	direct
farm_water_source	0..* FarmWaterSourceEnum	Source of water used on the farm for irrigation of crops or watering of lives...	direct
water_source_shared	0..* WaterSourceSharedEnum	Other users sharing access to the same water source	direct
water_pH	0..1 Double	pH measurement of the sample, or liquid portion of sample, or aqueous phase o...	direct
season	0..1 String	The season when sampling occurred	direct
solar_irradiance	0..1 QuantityValue	The amount of solar energy that arrives at a specific area of a surface durin...	direct
crop_yield	0..1 String	Amount of crop produced per unit or area of land	direct
season_humidity	0..1 QuantityValue	Average humidity of the region throughout the growing season	direct
humidity	0..1 QuantityValue	Amount of water vapour in the air, at the time of sampling	direct
adjacent_environment	0..* String	Description of the environmental system or features that are adjacent to the ...	direct
chem_administration	0..* String	List of chemical compounds administered to the host or site where sampling oc...	direct
food_prod	0..* String	Descriptors of the food production system or of the agricultural environment ...	direct
lot_number	0..* String	A distinctive alpha-numeric identification code assigned by the manufacturer ...	direct
fertilizer_admin	0..1 String	Type of fertilizer or amendment added to the soil or water for the purpose of...	direct
samp_stor_temp	0..1 QuantityValue	Temperature at which sample was stored, e	direct
food_trav_mode	0..* String	A descriptor for the method of movement of food commodity along the food dist...	direct
food_trav_vehic	0..* String	A descriptor for the mobile machine which is used to transport food commoditi...	direct
farm_equip_san	0..* String	Method used to sanitize growing and harvesting equipment	direct
farm_equip	0..* String	List of equipment used for planting, fertilization, harvesting, irrigation, l...	direct
farm_equip_shared	0..* String	List of planting, growing or harvesting equipment shared with other farms	direct
food_harvest_proc	0..* String	A harvesting process is a process which takes in some food material from an i...	direct
plant_struc	0..1 String	Name of plant structure the sample was obtained from; for Plant Ontology (PO)...	direct
host_dry_mass	0..1 QuantityValue	Measurement of dry mass	direct
ances_data	0..1 String	Information about either pedigree or other ancestral information description ...	direct
genetic_mod	0..1 String	Genetic modifications of the genome of an organism, which may occur naturally...	direct
Food_Product_type	0..1 String	new food product categories and food products themselves	direct
Food_source	0..1 String	Type of plant or animal from which the food product or its major ingredient i...	direct
spikein_strain	0..* String	Taxonomic information about the spike-in organism(s) at the strain level	direct
organism_count	0..* OrganismCountEnum	Total cell count of any organism (or group of organisms) per gram, volume or ...	direct
size_frac_low	0..1 QuantityValue	Refers to the mesh/pore size used to pre-filter/pre-sort the sample	direct
size_frac_up	0..1 QuantityValue	Refers to the mesh/pore size used to retain the sample	direct
cult_isol_date	0..1 Date	A culture isolation date is a date-time entity marking the end of a process i...	direct
samp_pooling	0..* String	Physical combination of several instances of like material, e	direct
root_med_macronutr	0..1 String	Measurement of the culture rooting medium macronutrients (N,P, K, Ca, Mg, S);...	direct
root_med_carbon	0..1 String	Source of organic carbon in the culture rooting medium; e	direct
root_med_ph	0..1 Double	pH measurement of the culture rooting medium; e	direct
soil_depth	0..1 QuantityValue	The vertical distance below local surface, e	direct
water_temp_regm	0..* String	Information about treatment involving an exposure to water with varying degre...	direct
watering_regm	0..* String	Information about treatment involving an exposure to watering frequencies, tr...	direct
standing_water_regm	0..* String	Treatment involving an exposure to standing water during a plant's life span,...	direct
gaseous_environment	0..* String	Use of conditions with differing gaseous environments; should include the nam...	direct
fungicide_regm	0..* String	Information about treatment involving use of fungicides; should include the n...	direct
climate_environment	0..* String	Treatment involving an exposure to a particular climate; treatment regimen in...	direct
herbicide_regm	0..* String	Information about treatment involving use of herbicides; information about tr...	direct
non_mineral_nutr_regm	0..* String	Information about treatment involving the exposure of plant to non-mineral nu...	direct
pesticide_regm	0..* String	Information about treatment involving use of insecticides; should include the...	direct
ph_regm	0..* String	Information about treatment involving exposure of plants to varying levels of...	direct
salt_regm	0..* String	Information about treatment involving use of salts as supplement to liquid an...	direct
season_environment	0..* String	Treatment involving an exposure to a particular season (e	direct
perturbation	0..* String	Type of perturbation, e	direct
samp_store_dur	0..1 String	Duration for which the sample was stored	direct
samp_store_loc	0..1 String	Location at which sample was stored, usually name of a specific freezer/room	direct
samp_collect_device	0..1 String	The device used to collect an environmental sample	direct
host_age	0..1 QuantityValue	Age of host at the time of sampling; relevant scale depends on species and st...	direct
host_common_name	0..1 String	Common name of the host	direct
host_genotype	0..1 String	Observed genotype	direct
host_height	0..1 QuantityValue	The height of subject	direct
host_subspecf_genlin	0..* String	Information about the genetic distinctness of the host organism below the sub...	direct
host_length	0..1 QuantityValue	The length of subject	direct
host_life_stage	0..1 String	Description of life stage of host	direct
host_phenotype	0..1 String	Phenotype of human or other host	direct
host_taxid	0..1 String	NCBI taxon id of the host, e	direct
host_tot_mass	0..1 QuantityValue	Total mass of the host at collection, the unit depends on host	direct
plant_product	0..1 String	Substance produced by the plant, where the sample was obtained from	direct
oxy_stat_samp	0..1 OxyStatSampEnum	Oxygenation status of sample	direct
assembly_quality	0..1 String	Tool(s) used for assembly, including version number and parameters	direct
url	0..* String	A related resource that is referenced, cited, or otherwise associated to the ...	direct
fao_class	0..1 FaoClassEnum	Soil classification from the FAO World Reference Database for Soil Resources	direct
local_class	0..1 String	Soil classification based on local soil classification system	direct
local_class_meth	0..1 String	Reference or method used in determining the local soil classification	direct
soil_type	0..1 String	Description of the soil type or classification	direct
soil_type_meth	0..1 String	Reference or method used in determining soil series name or other lower-level...	direct
horizon	0..1 HorizonEnum	Specific layer in the land area which measures parallel to the soil surface a...	direct
horizon_meth	0..1 String	Reference or method used in determining the horizon	direct
link_class_info	0..1 String	Link to digitized soil maps or other soil classification information	direct
previous_land_use	0..1 String	Previous land use and dates	direct
previous_land_use_meth	0..1 String	Reference or method used in determining previous land use and dates	direct
crop_rotation	0..1 String	Whether or not crop is rotated, and if yes, rotation schedule	direct
agrochem_addition	0..* String	Addition of fertilizers, pesticides, etc	direct
tillage	0..* TillageEnum	Note method(s) used for tilling	direct
fire	0..1 Date	Historical and/or physical evidence of fire	direct
flooding	0..1 Date	Historical and/or physical evidence of flooding	direct
extreme_event	0..1 Date	Unusual physical events that may have affected microbial populations	direct
link_climate_info	0..1 String	Link to climate resource	direct
annual_temp	0..1 QuantityValue	Mean annual temperature	direct
season_temp	0..1 QuantityValue	Mean seasonal temperature	direct
annual_precpt	0..1 QuantityValue	The average of all annual precipitation values known, or an estimated equival...	direct
season_precpt	0..1 QuantityValue	The average of all seasonal precipitation values known, or an estimated equiv...	direct
cur_land_use	0..1 CurLandUseEnum	Present state of sample site	direct
slope_gradient	0..1 QuantityValue	Commonly called 'slope'	direct
slope_aspect	0..1 QuantityValue	The direction a slope faces	direct
profile_position	0..1 ProfilePositionEnum	Cross-sectional position in the hillslope where sample was collected	direct
drainage_class	0..1 DrainageClassEnum	Drainage classification from a standard system such as the USDA system	direct
store_cond	0..1 String	Explain how and for how long the soil sample was stored before DNA extraction...	direct
ph_meth	0..1 String	Reference or method used in determining ph	direct
cur_vegetation	0..1 String	Vegetation classification from one or more standard classification systems, o...	direct
cur_vegetation_meth	0..1 String	Reference or method used in vegetation classification	direct
tot_org_carb	0..1 QuantityValue	Definition for soil: total organic carbon content of the soil, definition oth...	direct
tot_org_c_meth	0..1 String	Reference or method used in determining total organic carbon	direct
tot_nitro	0..1 QuantityValue	Total nitrogen concentration of water samples, calculated by: total nitrogen ...	direct
tot_n_meth	0..1 String	Reference or method used in determining the total nitrogen	direct
microbial_biomass	0..1 QuantityValue	The part of the organic matter in the soil that constitutes living microorgan...	direct
microbial_biomass_meth	0..1 String	Reference or method used in determining microbial biomass	direct
heavy_metals_meth	0..1 String	Reference or method used in determining heavy metals	direct
tot_car	0..1 QuantityValue	Total carbon content	direct
tot_phos	0..1 QuantityValue	Total amount or concentration of phosphate	direct
sieving	0..1 String	Collection design of pooled samples and/or sieve size and amount of sample si...	direct
pool_dna_extracts	0..1 String	Indicate whether multiple DNA extractions were mixed	direct
misc_param	0..* String	Any other measurement performed or parameter collected, that is not listed he...	direct

Identifier and Mapping Information

Schema Source

from schema: http://w3id.org/mixs

Mappings

Mapping Type	Mapped Value
self	MIXS:Agriculture
native	MIXS:Agriculture

LinkML Source

Direct

name: agriculture
description: agriculture
from_schema: http://w3id.org/mixs
slots:
- lat_lon
- depth
- alt
- elev
- temp
- geo_loc_name
- collection_date
- env_broad_scale
- env_local_scale
- env_medium
- plant_growth_med
- soil_horizon
- photosynt_activ
- photosynt_activ_meth
- samp_collect_method
- enrichment_protocol
- library_prep_kit
- sequencing_location
- soil_temp
- soil_pH
- soil_conductivity
- rel_location
- soil_cover
- porosity
- texture
- texture_meth
- host_symbiont
- pres_animal_insect
- plant_water_method
- anim_water_method
- farm_water_source
- water_source_shared
- water_pH
- season
- solar_irradiance
- crop_yield
- season_humidity
- humidity
- adjacent_environment
- chem_administration
- food_prod
- lot_number
- fertilizer_admin
- samp_stor_temp
- food_trav_mode
- food_trav_vehic
- farm_equip_san
- farm_equip
- farm_equip_shared
- food_harvest_proc
- plant_struc
- host_dry_mass
- ances_data
- genetic_mod
- Food_Product_type
- Food_source
- spikein_strain
- organism_count
- size_frac_low
- size_frac_up
- cult_isol_date
- samp_pooling
- root_med_macronutr
- root_med_carbon
- root_med_ph
- soil_depth
- water_temp_regm
- watering_regm
- standing_water_regm
- gaseous_environment
- fungicide_regm
- climate_environment
- herbicide_regm
- non_mineral_nutr_regm
- pesticide_regm
- ph_regm
- salt_regm
- season_environment
- perturbation
- samp_store_dur
- samp_store_loc
- samp_collect_device
- host_age
- host_common_name
- host_genotype
- host_height
- host_subspecf_genlin
- host_length
- host_life_stage
- host_phenotype
- host_taxid
- host_tot_mass
- plant_product
- oxy_stat_samp
- assembly_quality
- url
- fao_class
- local_class
- local_class_meth
- soil_type
- soil_type_meth
- horizon
- horizon_meth
- link_class_info
- previous_land_use
- previous_land_use_meth
- crop_rotation
- agrochem_addition
- tillage
- fire
- flooding
- extreme_event
- link_climate_info
- annual_temp
- season_temp
- annual_precpt
- season_precpt
- cur_land_use
- slope_gradient
- slope_aspect
- profile_position
- drainage_class
- store_cond
- ph_meth
- cur_vegetation
- cur_vegetation_meth
- tot_org_carb
- tot_org_c_meth
- tot_nitro
- tot_n_meth
- microbial_biomass
- microbial_biomass_meth
- heavy_metals_meth
- tot_car
- tot_phos
- sieving
- pool_dna_extracts
- misc_param
slot_usage:
  plant_growth_med:
    name: plant_growth_med
    domain_of:
    - plant-associated
    - food-farm environment
    - agriculture
    required: false
  soil_horizon:
    name: soil_horizon
    domain_of:
    - soil
    - agriculture
    required: false
  photosynt_activ:
    name: photosynt_activ
    domain_of:
    - agriculture
    required: false
  photosynt_activ_meth:
    name: photosynt_activ_meth
    domain_of:
    - agriculture
    required: false
  samp_collect_method:
    name: samp_collect_method
    domain_of:
    - food-food production facility
    - food-animal and animal feed
    - agriculture
    required: false
  enrichment_protocol:
    name: enrichment_protocol
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - agriculture
    required: false
  library_prep_kit:
    name: library_prep_kit
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - agriculture
    required: false
  sequencing_location:
    name: sequencing_location
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - agriculture
    required: false
  soil_temp:
    name: soil_temp
    domain_of:
    - food-farm environment
    - agriculture
    required: false
  soil_pH:
    name: soil_pH
    domain_of:
    - food-farm environment
    - agriculture
    required: false
  soil_conductivity:
    name: soil_conductivity
    domain_of:
    - food-farm environment
    - agriculture
    required: false
  rel_location:
    name: rel_location
    domain_of:
    - food-farm environment
    - agriculture
    required: false
  soil_cover:
    name: soil_cover
    domain_of:
    - food-farm environment
    - agriculture
    required: false
  porosity:
    name: porosity
    domain_of:
    - sediment
    - hydrocarbon resources-cores
    - agriculture
    required: false
  texture:
    name: texture
    domain_of:
    - agriculture
    required: false
  texture_meth:
    name: texture_meth
    domain_of:
    - agriculture
    required: false
  host_symbiont:
    name: host_symbiont
    domain_of:
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - agriculture
    required: false
  host_disease_stat:
    name: host_disease_stat
    required: false
  pres_animal_insect:
    name: pres_animal_insect
    domain_of:
    - built environment
    - agriculture
    required: false
  plant_water_method:
    name: plant_water_method
    domain_of:
    - food-farm environment
    - agriculture
    required: false
  anim_water_method:
    name: anim_water_method
    domain_of:
    - food-farm environment
    - agriculture
    required: false
  farm_water_source:
    name: farm_water_source
    domain_of:
    - food-farm environment
    - agriculture
    required: false
  water_source_shared:
    name: water_source_shared
    domain_of:
    - food-farm environment
    - agriculture
    required: false
  water_pH:
    name: water_pH
    domain_of:
    - food-farm environment
    - agriculture
    required: false
  elev:
    name: elev
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - built environment
    - air
    - agriculture
    required: false
  season:
    name: season
    domain_of:
    - food-farm environment
    - built environment
    - agriculture
    required: false
  solar_irradiance:
    name: solar_irradiance
    domain_of:
    - food-farm environment
    - air
    - agriculture
    required: false
  crop_yield:
    name: crop_yield
    domain_of:
    - food-farm environment
    - agriculture
    required: false
  season_humidity:
    name: season_humidity
    domain_of:
    - food-farm environment
    - agriculture
    required: false
  humidity:
    name: humidity
    domain_of:
    - food-farm environment
    - air
    - agriculture
    required: false
  adjacent_environment:
    name: adjacent_environment
    domain_of:
    - food-farm environment
    - agriculture
    required: false
  chem_administration:
    name: chem_administration
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-farm environment
    - air
    - agriculture
    required: true
  food_prod:
    name: food_prod
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    - agriculture
    required: false
  lot_number:
    name: lot_number
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - agriculture
    required: false
  fertilizer_admin:
    name: fertilizer_admin
    domain_of:
    - food-farm environment
    - agriculture
    required: false
  samp_stor_temp:
    name: samp_stor_temp
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - agriculture
    required: false
  food_trav_mode:
    name: food_trav_mode
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - agriculture
    required: false
  food_trav_vehic:
    name: food_trav_vehic
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - agriculture
    required: false
  farm_equip_san:
    name: farm_equip_san
    domain_of:
    - food-farm environment
    - agriculture
    required: false
  farm_equip:
    name: farm_equip
    domain_of:
    - food-farm environment
    - agriculture
    required: false
  farm_equip_shared:
    name: farm_equip_shared
    domain_of:
    - food-farm environment
    - agriculture
    required: false
  food_harvest_proc:
    name: food_harvest_proc
    domain_of:
    - food-farm environment
    - agriculture
    required: false
  plant_struc:
    name: plant_struc
    domain_of:
    - plant-associated
    - agriculture
    required: false
  host_dry_mass:
    name: host_dry_mass
    domain_of:
    - symbiont-associated
    - plant-associated
    - host-associated
    - food-farm environment
    - agriculture
    required: false
  ances_data:
    name: ances_data
    domain_of:
    - plant-associated
    - host-associated
    - food-farm environment
    - agriculture
    required: false
  genetic_mod:
    name: genetic_mod
    domain_of:
    - plant-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - agriculture
    required: false
  Food_Product_type:
    name: Food_Product_type
    domain_of:
    - agriculture
    required: false
  Food_source:
    name: Food_source
    domain_of:
    - agriculture
    required: true
  spikein_strain:
    name: spikein_strain
    domain_of:
    - food-human foods
    - food-farm environment
    - food-animal and animal feed
    - agriculture
    required: false
  organism_count:
    name: organism_count
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - built environment
    - air
    - agriculture
    required: false
  size_frac_low:
    name: size_frac_low
    domain_of:
    - water
    - food-farm environment
    - agriculture
    required: false
  size_frac_up:
    name: size_frac_up
    domain_of:
    - water
    - food-farm environment
    - agriculture
    required: false
  cult_isol_date:
    name: cult_isol_date
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - agriculture
    required: false
  samp_pooling:
    name: samp_pooling
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - agriculture
    required: false
  root_med_macronutr:
    name: root_med_macronutr
    domain_of:
    - plant-associated
    - food-farm environment
    - agriculture
    required: false
  root_med_carbon:
    name: root_med_carbon
    domain_of:
    - plant-associated
    - food-farm environment
    - agriculture
    required: false
  root_med_ph:
    name: root_med_ph
    domain_of:
    - plant-associated
    - food-farm environment
    - agriculture
    required: false
  soil_depth:
    name: soil_depth
    domain_of:
    - agriculture
    required: false
  specific_host:
    name: specific_host
    required: true
  pathogenicity:
    name: pathogenicity
    required: true
  biotic_relationship:
    name: biotic_relationship
    required: false
  water_temp_regm:
    name: water_temp_regm
    domain_of:
    - plant-associated
    - agriculture
    required: false
  watering_regm:
    name: watering_regm
    domain_of:
    - plant-associated
    - agriculture
    required: false
  standing_water_regm:
    name: standing_water_regm
    domain_of:
    - plant-associated
    - agriculture
    required: false
  gaseous_environment:
    name: gaseous_environment
    domain_of:
    - plant-associated
    - agriculture
    required: false
  fungicide_regm:
    name: fungicide_regm
    domain_of:
    - plant-associated
    - agriculture
    required: false
  climate_environment:
    name: climate_environment
    domain_of:
    - plant-associated
    - agriculture
    required: false
  herbicide_regm:
    name: herbicide_regm
    domain_of:
    - plant-associated
    - agriculture
    required: false
  non_mineral_nutr_regm:
    name: non_mineral_nutr_regm
    domain_of:
    - agriculture
    required: false
  pesticide_regm:
    name: pesticide_regm
    domain_of:
    - plant-associated
    - agriculture
    required: false
  ph_regm:
    name: ph_regm
    domain_of:
    - plant-associated
    - agriculture
    required: false
  salt_regm:
    name: salt_regm
    domain_of:
    - plant-associated
    - agriculture
    required: false
  season_environment:
    name: season_environment
    domain_of:
    - plant-associated
    - agriculture
    required: false
  temp:
    name: temp
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - built environment
    - air
    - agriculture
    required: true
  perturbation:
    name: perturbation
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-farm environment
    - food-animal and animal feed
    - air
    - agriculture
    required: false
  isol_growth_condt:
    name: isol_growth_condt
    required: false
  samp_store_dur:
    name: samp_store_dur
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    - agriculture
    required: true
  samp_store_loc:
    name: samp_store_loc
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    - agriculture
    required: true
  samp_collect_device:
    name: samp_collect_device
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - agriculture
    required: true
  samp_mat_process:
    name: samp_mat_process
    required: true
  host_age:
    name: host_age
    domain_of:
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-farm environment
    - agriculture
    required: true
  host_common_name:
    name: host_common_name
    domain_of:
    - symbiont-associated
    - plant-associated
    - host-associated
    - agriculture
    required: true
  host_genotype:
    name: host_genotype
    domain_of:
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-farm environment
    - agriculture
    required: true
  host_height:
    name: host_height
    domain_of:
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-farm environment
    - agriculture
    required: true
  host_subspecf_genlin:
    name: host_subspecf_genlin
    domain_of:
    - plant-associated
    - host-associated
    - food-farm environment
    - agriculture
    required: false
  host_length:
    name: host_length
    domain_of:
    - symbiont-associated
    - plant-associated
    - host-associated
    - food-farm environment
    - agriculture
    required: true
  host_life_stage:
    name: host_life_stage
    domain_of:
    - symbiont-associated
    - plant-associated
    - host-associated
    - agriculture
    required: true
  host_phenotype:
    name: host_phenotype
    domain_of:
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-farm environment
    - agriculture
    required: true
  host_taxid:
    name: host_taxid
    domain_of:
    - symbiont-associated
    - plant-associated
    - host-associated
    - food-farm environment
    - agriculture
    required: true
  host_tot_mass:
    name: host_tot_mass
    domain_of:
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-farm environment
    - agriculture
    required: true
  host_spec_range:
    name: host_spec_range
    required: true
  trophic_level:
    name: trophic_level
    required: false
  plant_product:
    name: plant_product
    domain_of:
    - plant-associated
    - agriculture
    required: false
  samp_size:
    name: samp_size
    required: true
  oxy_stat_samp:
    name: oxy_stat_samp
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    - agriculture
    required: false
  seq_meth:
    name: seq_meth
    required: true
  samp_vol_we_dna_ext:
    name: samp_vol_we_dna_ext
    required: true
  pcr_primers:
    name: pcr_primers
    required: true
  nucl_acid_ext:
    name: nucl_acid_ext
    required: true
  nucl_acid_amp:
    name: nucl_acid_amp
    required: true
  lib_size:
    name: lib_size
    required: false
  lib_reads_seqd:
    name: lib_reads_seqd
    required: true
  lib_layout:
    name: lib_layout
    required: false
  lib_vector:
    name: lib_vector
    required: true
  lib_screen:
    name: lib_screen
    required: true
  target_gene:
    name: target_gene
    required: true
  target_subfragment:
    name: target_subfragment
    required: true
  mid:
    name: mid
    required: true
  adapters:
    name: adapters
    required: true
  pcr_cond:
    name: pcr_cond
    required: true
  seq_quality_check:
    name: seq_quality_check
    required: false
  chimera_check:
    name: chimera_check
    required: true
  assembly_name:
    name: assembly_name
    required: true
  assembly_software:
    name: assembly_software
    required: false
  assembly_quality:
    name: assembly_quality
    domain_of:
    - agriculture
    required: false
  annot:
    name: annot
    required: false
  url:
    name: url
    domain_of:
    - agriculture
    required: false
  sop:
    name: sop
    required: false
  source_mat_id:
    name: source_mat_id
    required: false
  fao_class:
    name: fao_class
    domain_of:
    - soil
    - agriculture
    required: false
  local_class:
    name: local_class
    domain_of:
    - soil
    - agriculture
    required: false
  local_class_meth:
    name: local_class_meth
    domain_of:
    - soil
    - agriculture
    required: false
  soil_type:
    name: soil_type
    domain_of:
    - soil
    - food-farm environment
    - agriculture
    required: true
  soil_type_meth:
    name: soil_type_meth
    domain_of:
    - soil
    - food-farm environment
    - agriculture
    required: true
  horizon:
    name: horizon
    domain_of:
    - agriculture
    required: false
  horizon_meth:
    name: horizon_meth
    domain_of:
    - soil
    - agriculture
    required: false
  link_class_info:
    name: link_class_info
    domain_of:
    - soil
    - agriculture
    required: false
  previous_land_use:
    name: previous_land_use
    domain_of:
    - soil
    - food-farm environment
    - agriculture
    required: false
  previous_land_use_meth:
    name: previous_land_use_meth
    domain_of:
    - agriculture
    required: false
  crop_rotation:
    name: crop_rotation
    domain_of:
    - soil
    - food-farm environment
    - agriculture
    required: false
  agrochem_addition:
    name: agrochem_addition
    domain_of:
    - soil
    - agriculture
    required: false
  tillage:
    name: tillage
    domain_of:
    - soil
    - food-farm environment
    - agriculture
    required: false
  fire:
    name: fire
    domain_of:
    - soil
    - agriculture
    required: false
  flooding:
    name: flooding
    domain_of:
    - soil
    - agriculture
    required: false
  extreme_event:
    name: extreme_event
    domain_of:
    - soil
    - agriculture
    required: false
  link_climate_info:
    name: link_climate_info
    domain_of:
    - soil
    - agriculture
    required: false
  annual_temp:
    name: annual_temp
    domain_of:
    - soil
    - agriculture
    required: false
  season_temp:
    name: season_temp
    domain_of:
    - soil
    - food-farm environment
    - agriculture
    required: false
  annual_precpt:
    name: annual_precpt
    domain_of:
    - soil
    - agriculture
    required: false
  season_precpt:
    name: season_precpt
    domain_of:
    - soil
    - food-farm environment
    - agriculture
    required: false
  cur_land_use:
    name: cur_land_use
    domain_of:
    - soil
    - agriculture
    required: false
  slope_gradient:
    name: slope_gradient
    domain_of:
    - soil
    - agriculture
    required: false
  slope_aspect:
    name: slope_aspect
    domain_of:
    - soil
    - agriculture
    required: false
  profile_position:
    name: profile_position
    domain_of:
    - soil
    - agriculture
    required: false
  drainage_class:
    name: drainage_class
    domain_of:
    - soil
    - agriculture
    required: false
  store_cond:
    name: store_cond
    domain_of:
    - soil
    - agriculture
    required: true
  ph_meth:
    name: ph_meth
    domain_of:
    - soil
    - food-farm environment
    - agriculture
    required: false
  cur_vegetation:
    name: cur_vegetation
    domain_of:
    - soil
    - agriculture
    required: false
  cur_vegetation_meth:
    name: cur_vegetation_meth
    domain_of:
    - soil
    - agriculture
    required: false
  tot_org_carb:
    name: tot_org_carb
    domain_of:
    - soil
    - sediment
    - microbial mat_biofilm
    - food-farm environment
    - agriculture
    required: false
  tot_org_c_meth:
    name: tot_org_c_meth
    domain_of:
    - soil
    - food-farm environment
    - agriculture
    required: false
  tot_nitro:
    name: tot_nitro
    domain_of:
    - water
    - wastewater_sludge
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - agriculture
    required: false
  tot_n_meth:
    name: tot_n_meth
    domain_of:
    - agriculture
    required: false
  microbial_biomass:
    name: microbial_biomass
    domain_of:
    - soil
    - agriculture
    required: true
  microbial_biomass_meth:
    name: microbial_biomass_meth
    domain_of:
    - agriculture
    required: true
  heavy_metals_meth:
    name: heavy_metals_meth
    domain_of:
    - soil
    - agriculture
    required: false
  tot_car:
    name: tot_car
    domain_of:
    - agriculture
    required: false
  tot_phos:
    name: tot_phos
    domain_of:
    - agriculture
    required: false
  sieving:
    name: sieving
    domain_of:
    - soil
    - agriculture
    required: true
  pool_dna_extracts:
    name: pool_dna_extracts
    domain_of:
    - soil
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    - agriculture
    required: true
  misc_param:
    name: misc_param
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - air
    - agriculture
    required: false

Induced

name: agriculture
description: agriculture
from_schema: http://w3id.org/mixs
slot_usage:
  plant_growth_med:
    name: plant_growth_med
    domain_of:
    - plant-associated
    - food-farm environment
    - agriculture
    required: false
  soil_horizon:
    name: soil_horizon
    domain_of:
    - soil
    - agriculture
    required: false
  photosynt_activ:
    name: photosynt_activ
    domain_of:
    - agriculture
    required: false
  photosynt_activ_meth:
    name: photosynt_activ_meth
    domain_of:
    - agriculture
    required: false
  samp_collect_method:
    name: samp_collect_method
    domain_of:
    - food-food production facility
    - food-animal and animal feed
    - agriculture
    required: false
  enrichment_protocol:
    name: enrichment_protocol
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - agriculture
    required: false
  library_prep_kit:
    name: library_prep_kit
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - agriculture
    required: false
  sequencing_location:
    name: sequencing_location
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - agriculture
    required: false
  soil_temp:
    name: soil_temp
    domain_of:
    - food-farm environment
    - agriculture
    required: false
  soil_pH:
    name: soil_pH
    domain_of:
    - food-farm environment
    - agriculture
    required: false
  soil_conductivity:
    name: soil_conductivity
    domain_of:
    - food-farm environment
    - agriculture
    required: false
  rel_location:
    name: rel_location
    domain_of:
    - food-farm environment
    - agriculture
    required: false
  soil_cover:
    name: soil_cover
    domain_of:
    - food-farm environment
    - agriculture
    required: false
  porosity:
    name: porosity
    domain_of:
    - sediment
    - hydrocarbon resources-cores
    - agriculture
    required: false
  texture:
    name: texture
    domain_of:
    - agriculture
    required: false
  texture_meth:
    name: texture_meth
    domain_of:
    - agriculture
    required: false
  host_symbiont:
    name: host_symbiont
    domain_of:
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - agriculture
    required: false
  host_disease_stat:
    name: host_disease_stat
    required: false
  pres_animal_insect:
    name: pres_animal_insect
    domain_of:
    - built environment
    - agriculture
    required: false
  plant_water_method:
    name: plant_water_method
    domain_of:
    - food-farm environment
    - agriculture
    required: false
  anim_water_method:
    name: anim_water_method
    domain_of:
    - food-farm environment
    - agriculture
    required: false
  farm_water_source:
    name: farm_water_source
    domain_of:
    - food-farm environment
    - agriculture
    required: false
  water_source_shared:
    name: water_source_shared
    domain_of:
    - food-farm environment
    - agriculture
    required: false
  water_pH:
    name: water_pH
    domain_of:
    - food-farm environment
    - agriculture
    required: false
  elev:
    name: elev
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - built environment
    - air
    - agriculture
    required: false
  season:
    name: season
    domain_of:
    - food-farm environment
    - built environment
    - agriculture
    required: false
  solar_irradiance:
    name: solar_irradiance
    domain_of:
    - food-farm environment
    - air
    - agriculture
    required: false
  crop_yield:
    name: crop_yield
    domain_of:
    - food-farm environment
    - agriculture
    required: false
  season_humidity:
    name: season_humidity
    domain_of:
    - food-farm environment
    - agriculture
    required: false
  humidity:
    name: humidity
    domain_of:
    - food-farm environment
    - air
    - agriculture
    required: false
  adjacent_environment:
    name: adjacent_environment
    domain_of:
    - food-farm environment
    - agriculture
    required: false
  chem_administration:
    name: chem_administration
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-farm environment
    - air
    - agriculture
    required: true
  food_prod:
    name: food_prod
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    - agriculture
    required: false
  lot_number:
    name: lot_number
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - agriculture
    required: false
  fertilizer_admin:
    name: fertilizer_admin
    domain_of:
    - food-farm environment
    - agriculture
    required: false
  samp_stor_temp:
    name: samp_stor_temp
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - agriculture
    required: false
  food_trav_mode:
    name: food_trav_mode
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - agriculture
    required: false
  food_trav_vehic:
    name: food_trav_vehic
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - agriculture
    required: false
  farm_equip_san:
    name: farm_equip_san
    domain_of:
    - food-farm environment
    - agriculture
    required: false
  farm_equip:
    name: farm_equip
    domain_of:
    - food-farm environment
    - agriculture
    required: false
  farm_equip_shared:
    name: farm_equip_shared
    domain_of:
    - food-farm environment
    - agriculture
    required: false
  food_harvest_proc:
    name: food_harvest_proc
    domain_of:
    - food-farm environment
    - agriculture
    required: false
  plant_struc:
    name: plant_struc
    domain_of:
    - plant-associated
    - agriculture
    required: false
  host_dry_mass:
    name: host_dry_mass
    domain_of:
    - symbiont-associated
    - plant-associated
    - host-associated
    - food-farm environment
    - agriculture
    required: false
  ances_data:
    name: ances_data
    domain_of:
    - plant-associated
    - host-associated
    - food-farm environment
    - agriculture
    required: false
  genetic_mod:
    name: genetic_mod
    domain_of:
    - plant-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - agriculture
    required: false
  Food_Product_type:
    name: Food_Product_type
    domain_of:
    - agriculture
    required: false
  Food_source:
    name: Food_source
    domain_of:
    - agriculture
    required: true
  spikein_strain:
    name: spikein_strain
    domain_of:
    - food-human foods
    - food-farm environment
    - food-animal and animal feed
    - agriculture
    required: false
  organism_count:
    name: organism_count
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - built environment
    - air
    - agriculture
    required: false
  size_frac_low:
    name: size_frac_low
    domain_of:
    - water
    - food-farm environment
    - agriculture
    required: false
  size_frac_up:
    name: size_frac_up
    domain_of:
    - water
    - food-farm environment
    - agriculture
    required: false
  cult_isol_date:
    name: cult_isol_date
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - agriculture
    required: false
  samp_pooling:
    name: samp_pooling
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - agriculture
    required: false
  root_med_macronutr:
    name: root_med_macronutr
    domain_of:
    - plant-associated
    - food-farm environment
    - agriculture
    required: false
  root_med_carbon:
    name: root_med_carbon
    domain_of:
    - plant-associated
    - food-farm environment
    - agriculture
    required: false
  root_med_ph:
    name: root_med_ph
    domain_of:
    - plant-associated
    - food-farm environment
    - agriculture
    required: false
  soil_depth:
    name: soil_depth
    domain_of:
    - agriculture
    required: false
  specific_host:
    name: specific_host
    required: true
  pathogenicity:
    name: pathogenicity
    required: true
  biotic_relationship:
    name: biotic_relationship
    required: false
  water_temp_regm:
    name: water_temp_regm
    domain_of:
    - plant-associated
    - agriculture
    required: false
  watering_regm:
    name: watering_regm
    domain_of:
    - plant-associated
    - agriculture
    required: false
  standing_water_regm:
    name: standing_water_regm
    domain_of:
    - plant-associated
    - agriculture
    required: false
  gaseous_environment:
    name: gaseous_environment
    domain_of:
    - plant-associated
    - agriculture
    required: false
  fungicide_regm:
    name: fungicide_regm
    domain_of:
    - plant-associated
    - agriculture
    required: false
  climate_environment:
    name: climate_environment
    domain_of:
    - plant-associated
    - agriculture
    required: false
  herbicide_regm:
    name: herbicide_regm
    domain_of:
    - plant-associated
    - agriculture
    required: false
  non_mineral_nutr_regm:
    name: non_mineral_nutr_regm
    domain_of:
    - agriculture
    required: false
  pesticide_regm:
    name: pesticide_regm
    domain_of:
    - plant-associated
    - agriculture
    required: false
  ph_regm:
    name: ph_regm
    domain_of:
    - plant-associated
    - agriculture
    required: false
  salt_regm:
    name: salt_regm
    domain_of:
    - plant-associated
    - agriculture
    required: false
  season_environment:
    name: season_environment
    domain_of:
    - plant-associated
    - agriculture
    required: false
  temp:
    name: temp
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - built environment
    - air
    - agriculture
    required: true
  perturbation:
    name: perturbation
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-farm environment
    - food-animal and animal feed
    - air
    - agriculture
    required: false
  isol_growth_condt:
    name: isol_growth_condt
    required: false
  samp_store_dur:
    name: samp_store_dur
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    - agriculture
    required: true
  samp_store_loc:
    name: samp_store_loc
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    - agriculture
    required: true
  samp_collect_device:
    name: samp_collect_device
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - agriculture
    required: true
  samp_mat_process:
    name: samp_mat_process
    required: true
  host_age:
    name: host_age
    domain_of:
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-farm environment
    - agriculture
    required: true
  host_common_name:
    name: host_common_name
    domain_of:
    - symbiont-associated
    - plant-associated
    - host-associated
    - agriculture
    required: true
  host_genotype:
    name: host_genotype
    domain_of:
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-farm environment
    - agriculture
    required: true
  host_height:
    name: host_height
    domain_of:
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-farm environment
    - agriculture
    required: true
  host_subspecf_genlin:
    name: host_subspecf_genlin
    domain_of:
    - plant-associated
    - host-associated
    - food-farm environment
    - agriculture
    required: false
  host_length:
    name: host_length
    domain_of:
    - symbiont-associated
    - plant-associated
    - host-associated
    - food-farm environment
    - agriculture
    required: true
  host_life_stage:
    name: host_life_stage
    domain_of:
    - symbiont-associated
    - plant-associated
    - host-associated
    - agriculture
    required: true
  host_phenotype:
    name: host_phenotype
    domain_of:
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-farm environment
    - agriculture
    required: true
  host_taxid:
    name: host_taxid
    domain_of:
    - symbiont-associated
    - plant-associated
    - host-associated
    - food-farm environment
    - agriculture
    required: true
  host_tot_mass:
    name: host_tot_mass
    domain_of:
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-farm environment
    - agriculture
    required: true
  host_spec_range:
    name: host_spec_range
    required: true
  trophic_level:
    name: trophic_level
    required: false
  plant_product:
    name: plant_product
    domain_of:
    - plant-associated
    - agriculture
    required: false
  samp_size:
    name: samp_size
    required: true
  oxy_stat_samp:
    name: oxy_stat_samp
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    - agriculture
    required: false
  seq_meth:
    name: seq_meth
    required: true
  samp_vol_we_dna_ext:
    name: samp_vol_we_dna_ext
    required: true
  pcr_primers:
    name: pcr_primers
    required: true
  nucl_acid_ext:
    name: nucl_acid_ext
    required: true
  nucl_acid_amp:
    name: nucl_acid_amp
    required: true
  lib_size:
    name: lib_size
    required: false
  lib_reads_seqd:
    name: lib_reads_seqd
    required: true
  lib_layout:
    name: lib_layout
    required: false
  lib_vector:
    name: lib_vector
    required: true
  lib_screen:
    name: lib_screen
    required: true
  target_gene:
    name: target_gene
    required: true
  target_subfragment:
    name: target_subfragment
    required: true
  mid:
    name: mid
    required: true
  adapters:
    name: adapters
    required: true
  pcr_cond:
    name: pcr_cond
    required: true
  seq_quality_check:
    name: seq_quality_check
    required: false
  chimera_check:
    name: chimera_check
    required: true
  assembly_name:
    name: assembly_name
    required: true
  assembly_software:
    name: assembly_software
    required: false
  assembly_quality:
    name: assembly_quality
    domain_of:
    - agriculture
    required: false
  annot:
    name: annot
    required: false
  url:
    name: url
    domain_of:
    - agriculture
    required: false
  sop:
    name: sop
    required: false
  source_mat_id:
    name: source_mat_id
    required: false
  fao_class:
    name: fao_class
    domain_of:
    - soil
    - agriculture
    required: false
  local_class:
    name: local_class
    domain_of:
    - soil
    - agriculture
    required: false
  local_class_meth:
    name: local_class_meth
    domain_of:
    - soil
    - agriculture
    required: false
  soil_type:
    name: soil_type
    domain_of:
    - soil
    - food-farm environment
    - agriculture
    required: true
  soil_type_meth:
    name: soil_type_meth
    domain_of:
    - soil
    - food-farm environment
    - agriculture
    required: true
  horizon:
    name: horizon
    domain_of:
    - agriculture
    required: false
  horizon_meth:
    name: horizon_meth
    domain_of:
    - soil
    - agriculture
    required: false
  link_class_info:
    name: link_class_info
    domain_of:
    - soil
    - agriculture
    required: false
  previous_land_use:
    name: previous_land_use
    domain_of:
    - soil
    - food-farm environment
    - agriculture
    required: false
  previous_land_use_meth:
    name: previous_land_use_meth
    domain_of:
    - agriculture
    required: false
  crop_rotation:
    name: crop_rotation
    domain_of:
    - soil
    - food-farm environment
    - agriculture
    required: false
  agrochem_addition:
    name: agrochem_addition
    domain_of:
    - soil
    - agriculture
    required: false
  tillage:
    name: tillage
    domain_of:
    - soil
    - food-farm environment
    - agriculture
    required: false
  fire:
    name: fire
    domain_of:
    - soil
    - agriculture
    required: false
  flooding:
    name: flooding
    domain_of:
    - soil
    - agriculture
    required: false
  extreme_event:
    name: extreme_event
    domain_of:
    - soil
    - agriculture
    required: false
  link_climate_info:
    name: link_climate_info
    domain_of:
    - soil
    - agriculture
    required: false
  annual_temp:
    name: annual_temp
    domain_of:
    - soil
    - agriculture
    required: false
  season_temp:
    name: season_temp
    domain_of:
    - soil
    - food-farm environment
    - agriculture
    required: false
  annual_precpt:
    name: annual_precpt
    domain_of:
    - soil
    - agriculture
    required: false
  season_precpt:
    name: season_precpt
    domain_of:
    - soil
    - food-farm environment
    - agriculture
    required: false
  cur_land_use:
    name: cur_land_use
    domain_of:
    - soil
    - agriculture
    required: false
  slope_gradient:
    name: slope_gradient
    domain_of:
    - soil
    - agriculture
    required: false
  slope_aspect:
    name: slope_aspect
    domain_of:
    - soil
    - agriculture
    required: false
  profile_position:
    name: profile_position
    domain_of:
    - soil
    - agriculture
    required: false
  drainage_class:
    name: drainage_class
    domain_of:
    - soil
    - agriculture
    required: false
  store_cond:
    name: store_cond
    domain_of:
    - soil
    - agriculture
    required: true
  ph_meth:
    name: ph_meth
    domain_of:
    - soil
    - food-farm environment
    - agriculture
    required: false
  cur_vegetation:
    name: cur_vegetation
    domain_of:
    - soil
    - agriculture
    required: false
  cur_vegetation_meth:
    name: cur_vegetation_meth
    domain_of:
    - soil
    - agriculture
    required: false
  tot_org_carb:
    name: tot_org_carb
    domain_of:
    - soil
    - sediment
    - microbial mat_biofilm
    - food-farm environment
    - agriculture
    required: false
  tot_org_c_meth:
    name: tot_org_c_meth
    domain_of:
    - soil
    - food-farm environment
    - agriculture
    required: false
  tot_nitro:
    name: tot_nitro
    domain_of:
    - water
    - wastewater_sludge
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - agriculture
    required: false
  tot_n_meth:
    name: tot_n_meth
    domain_of:
    - agriculture
    required: false
  microbial_biomass:
    name: microbial_biomass
    domain_of:
    - soil
    - agriculture
    required: true
  microbial_biomass_meth:
    name: microbial_biomass_meth
    domain_of:
    - agriculture
    required: true
  heavy_metals_meth:
    name: heavy_metals_meth
    domain_of:
    - soil
    - agriculture
    required: false
  tot_car:
    name: tot_car
    domain_of:
    - agriculture
    required: false
  tot_phos:
    name: tot_phos
    domain_of:
    - agriculture
    required: false
  sieving:
    name: sieving
    domain_of:
    - soil
    - agriculture
    required: true
  pool_dna_extracts:
    name: pool_dna_extracts
    domain_of:
    - soil
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    - agriculture
    required: true
  misc_param:
    name: misc_param
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - air
    - agriculture
    required: false
attributes:
  lat_lon:
    name: lat_lon
    annotations:
      expected_value:
        tag: expected_value
        value: decimal degrees,  limit to 8 decimal points
    description: The geographical origin of the sample as defined by latitude and
      longitude. The values should be reported in decimal degrees and in WGS84 system
    title: geographic location (latitude and longitude)
    examples:
    - value: 50.586825 6.408977
    from_schema: http://w3id.org/mixs
    aliases:
    - geographic location (latitude and longitude)
    is_a: environment field
    string_serialization: '{float} {float}'
    slot_uri: MIXS:0000009
    multivalued: false
    alias: lat_lon
    owner: agriculture
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    - built environment
    - air
    - agriculture
    range: string
  depth:
    name: depth
    annotations:
      expected_value:
        tag: expected_value
        value: measurement value
    description: The vertical distance below local surface, e.g. for sediment or soil
      samples depth is measured from sediment or soil surface, respectively. Depth
      can be reported as an interval for subsurface samples.
    title: depth
    examples:
    - value: 10 meter
    from_schema: http://w3id.org/mixs
    aliases:
    - depth
    is_a: environment field
    slot_uri: MIXS:0000018
    multivalued: false
    alias: depth
    owner: agriculture
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - built environment
    - air
    - agriculture
    range: quantity value
  alt:
    name: alt
    annotations:
      expected_value:
        tag: expected_value
        value: measurement value
    description: Altitude is a term used to identify heights of objects such as airplanes,
      space shuttles, rockets, atmospheric balloons and heights of places such as
      atmospheric layers and clouds. It is used to measure the height of an object
      which is above the earth's surface. In this context, the altitude measurement
      is the vertical distance between the earth's surface above sea level and the
      sampled position in the air
    title: altitude
    examples:
    - value: 100 meter
    from_schema: http://w3id.org/mixs
    aliases:
    - altitude
    is_a: environment field
    slot_uri: MIXS:0000094
    multivalued: false
    alias: alt
    owner: agriculture
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - built environment
    - air
    - agriculture
    range: quantity value
  elev:
    name: elev
    description: Elevation of the sampling site is its height above a fixed reference
      point, most commonly the mean sea level. Elevation is mainly used when referring
      to points on the earth's surface, while altitude is used for points above the
      surface, such as an aircraft in flight or a spacecraft in orbit.
    title: elevation
    from_schema: http://w3id.org/mixs
    is_a: environment field
    slot_uri: MIXS:0000093
    multivalued: false
    alias: elev
    owner: agriculture
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - built environment
    - air
    - agriculture
    range: quantity value
    required: false
  temp:
    name: temp
    description: Temperature of the sample at the time of sampling.
    title: temperature
    from_schema: http://w3id.org/mixs
    is_a: environment field
    slot_uri: MIXS:0000113
    multivalued: false
    alias: temp
    owner: agriculture
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - built environment
    - air
    - agriculture
    range: quantity value
    required: true
  geo_loc_name:
    name: geo_loc_name
    annotations:
      expected_value:
        tag: expected_value
        value: 'country or sea name (INSDC or GAZ): region(GAZ), specific location
          name'
    description: The geographical origin of the sample as defined by the country or
      sea name followed by specific region name. Country or sea names should be chosen
      from the INSDC country list (http://insdc.org/country.html), or the GAZ ontology
      (http://purl.bioontology.org/ontology/GAZ)
    title: geographic location (country and/or sea,region)
    examples:
    - value: 'USA: Maryland, Bethesda'
    from_schema: http://w3id.org/mixs
    aliases:
    - geographic location (country and/or sea,region)
    is_a: environment field
    string_serialization: '{term}: {term}, {text}'
    slot_uri: MIXS:0000010
    multivalued: false
    alias: geo_loc_name
    owner: agriculture
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    - built environment
    - air
    - agriculture
    range: string
  collection_date:
    name: collection_date
    annotations:
      expected_value:
        tag: expected_value
        value: date and time
    description: 'The time of sampling, either as an instance (single point in time)
      or interval. In case no exact time is available, the date/time can be right
      truncated i.e. all of these are valid times: 2008-01-23T19:23:10+00:00; 2008-01-23T19:23:10;
      2008-01-23; 2008-01; 2008; Except: 2008-01; 2008 all are ISO8601 compliant'
    title: collection date
    examples:
    - value: 2018-05-11T10:00:00+01:00; 2018-05-11
    from_schema: http://w3id.org/mixs
    aliases:
    - collection date
    is_a: environment field
    slot_uri: MIXS:0000011
    multivalued: false
    alias: collection_date
    owner: agriculture
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    - built environment
    - air
    - agriculture
    range: date
  env_broad_scale:
    name: env_broad_scale
    annotations:
      expected_value:
        tag: expected_value
        value: The major environment type(s) where the sample was collected. Recommend
          subclasses of biome [ENVO:00000428]. Multiple terms can be separated by
          one or more pipes.
    description: 'Report the major environmental system the sample or specimen came
      from. The system(s) identified should have a coarse spatial grain, to provide
      the general environmental context of where the sampling was done (e.g. in the
      desert or a rainforest). We recommend using subclasses of EnvO’s biome class:  http://purl.obolibrary.org/obo/ENVO_00000428.
      EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS'
    title: broad-scale environmental context
    examples:
    - value: oceanic epipelagic zone biome [ENVO:01000033] for annotating a water
        sample from the photic zone in middle of the Atlantic Ocean
    from_schema: http://w3id.org/mixs
    aliases:
    - broad-scale environmental context
    is_a: environment field
    string_serialization: '{termLabel} {[termID]}'
    slot_uri: MIXS:0000012
    multivalued: false
    alias: env_broad_scale
    owner: agriculture
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    - built environment
    - air
    - agriculture
    range: string
  env_local_scale:
    name: env_local_scale
    annotations:
      expected_value:
        tag: expected_value
        value: Environmental entities having causal influences upon the entity at
          time of sampling.
    description: 'Report the entity or entities which are in the sample or specimen’s
      local vicinity and which you believe have significant causal influences on your
      sample or specimen. We recommend using EnvO terms which are of smaller spatial
      grain than your entry for env_broad_scale. Terms, such as anatomical sites,
      from other OBO Library ontologies which interoperate with EnvO (e.g. UBERON)
      are accepted in this field. EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS.'
    title: local environmental context
    examples:
    - value: 'litter layer [ENVO:01000338]; Annotating a pooled sample taken from
        various vegetation layers in a forest consider: canopy [ENVO:00000047]|herb
        and fern layer [ENVO:01000337]|litter layer [ENVO:01000338]|understory [01000335]|shrub
        layer [ENVO:01000336].'
    from_schema: http://w3id.org/mixs
    aliases:
    - local environmental context
    is_a: environment field
    string_serialization: '{termLabel} {[termID]}'
    slot_uri: MIXS:0000013
    multivalued: false
    alias: env_local_scale
    owner: agriculture
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    - built environment
    - air
    - agriculture
    range: string
  env_medium:
    name: env_medium
    annotations:
      expected_value:
        tag: expected_value
        value: The material displaced by the entity at time of sampling. Recommend
          subclasses of environmental material [ENVO:00010483].
    description: 'Report the environmental material(s) immediately surrounding the
      sample or specimen at the time of sampling. We recommend using subclasses of
      ''environmental material'' (http://purl.obolibrary.org/obo/ENVO_00010483). EnvO
      documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS
      . Terms from other OBO ontologies are permissible as long as they reference
      mass/volume nouns (e.g. air, water, blood) and not discrete, countable entities
      (e.g. a tree, a leaf, a table top).'
    title: environmental medium
    examples:
    - value: 'soil [ENVO:00001998]; Annotating a fish swimming in the upper 100 m
        of the Atlantic Ocean, consider: ocean water [ENVO:00002151]. Example: Annotating
        a duck on a pond consider: pond water [ENVO:00002228]|air [ENVO_00002005]'
    from_schema: http://w3id.org/mixs
    aliases:
    - environmental medium
    is_a: environment field
    string_serialization: '{termLabel} {[termID]}'
    slot_uri: MIXS:0000014
    multivalued: false
    alias: env_medium
    owner: agriculture
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    - built environment
    - air
    - agriculture
    range: string
  plant_growth_med:
    name: plant_growth_med
    description: Specification of the media for growing the plants or tissue cultured
      samples, e.g. soil, aeroponic, hydroponic, in vitro solid culture medium, in
      vitro liquid culture medium. Recommended value is a specific value from EO:plant
      growth medium (follow this link for terms http://purl.obolibrary.org/obo/EO_0007147)
      or other controlled vocabulary
    title: plant growth medium
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0001057
    multivalued: false
    alias: plant_growth_med
    owner: agriculture
    domain_of:
    - plant-associated
    - food-farm environment
    - agriculture
    range: plant_growth_med_enum
    required: false
  soil_horizon:
    name: soil_horizon
    description: Specific layer in the land area which measures parallel to the soil
      surface and possesses physical characteristics which differ from the layers
      above and beneath
    title: soil horizon
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0001082
    multivalued: false
    alias: soil_horizon
    owner: agriculture
    domain_of:
    - soil
    - agriculture
    range: soil_horizon_enum
    required: false
  photosynt_activ:
    name: photosynt_activ
    description: Measurement of photosythetic activity (i.e. leaf gas exchange / chlorophyll
      fluorescence emissions / reflectance / transpiration) Please also include the
      term method term detailing the method of activity measurement.
    title: photosynthetic activity
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0001296
    multivalued: true
    alias: photosynt_activ
    owner: agriculture
    domain_of:
    - agriculture
    range: quantity value
    required: false
  photosynt_activ_meth:
    name: photosynt_activ_meth
    description: Reference or method used in measurement of photosythetic activity
    title: photosynthetic activity method
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{PMID}|{DOI}|{URL}|{text}'
    slot_uri: MIXS:0001336
    multivalued: true
    alias: photosynt_activ_meth
    owner: agriculture
    domain_of:
    - agriculture
    range: string
    required: false
  samp_collect_method:
    name: samp_collect_method
    description: The method employed for collecting the sample.
    title: sample collection method
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{PMID}|{DOI}|{URL}|{text}'
    slot_uri: MIXS:0001225
    multivalued: false
    alias: samp_collect_method
    owner: agriculture
    domain_of:
    - food-food production facility
    - food-animal and animal feed
    - agriculture
    range: string
    required: false
  enrichment_protocol:
    name: enrichment_protocol
    description: The microbiological workflow or protocol followed to test for the
      presence or enumeration of the target microbial analyte(s). Please provide a
      PubMed or DOI reference for published protocols.
    title: enrichment protocol
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{PMID}|{DOI}|{URL}|{text}'
    slot_uri: MIXS:0001177
    multivalued: false
    alias: enrichment_protocol
    owner: agriculture
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - agriculture
    range: string
    required: false
  library_prep_kit:
    name: library_prep_kit
    description: Packaged kits (containing adapters, indexes, enzymes, buffers etc.),
      tailored for specific sequencing workflows, which allow the simplified preparation
      of sequencing-ready libraries for small genomes, amplicons, and plasmids.
    title: library preparation kit
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0001145
    multivalued: false
    alias: library_prep_kit
    owner: agriculture
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - agriculture
    range: string
    required: false
  sequencing_location:
    name: sequencing_location
    description: The location the sequencing run was performed. Indicate the name
      of the lab or core facility where samples were sequenced.
    title: sequencing location
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0001156
    multivalued: false
    alias: sequencing_location
    owner: agriculture
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - agriculture
    range: string
    required: false
  soil_temp:
    name: soil_temp
    description: Temperature of soil at the time of sampling.
    title: soil temperature
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{float}{unit}'
    slot_uri: MIXS:0001163
    multivalued: true
    alias: soil_temp
    owner: agriculture
    domain_of:
    - food-farm environment
    - agriculture
    range: string
    required: false
  soil_pH:
    name: soil_pH
    description: The pH of soil at time of sampling.
    title: soil pH
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0001160
    multivalued: false
    alias: soil_pH
    owner: agriculture
    domain_of:
    - food-farm environment
    - agriculture
    range: double
    required: false
  soil_conductivity:
    name: soil_conductivity
    description: Conductivity of soil at time of sampling.
    title: soil conductivity
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0001158
    multivalued: false
    alias: soil_conductivity
    owner: agriculture
    domain_of:
    - food-farm environment
    - agriculture
    range: quantity value
    required: false
  rel_location:
    name: rel_location
    description: Location of sampled soil to other parts of the farm e.g. under crop
      plant, near irrigation ditch, from the dirt road.
    title: relative location of sample
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0001161
    multivalued: false
    alias: rel_location
    owner: agriculture
    domain_of:
    - food-farm environment
    - agriculture
    range: string
    required: false
  soil_cover:
    name: soil_cover
    description: Description of the material covering the sampled soil. This field
      accepts terms under ENVO:00010483, environmental material.
    title: soil cover
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{termLabel} {[termID]}'
    slot_uri: MIXS:0001159
    multivalued: false
    alias: soil_cover
    owner: agriculture
    domain_of:
    - food-farm environment
    - agriculture
    range: string
    required: false
  porosity:
    name: porosity
    description: Porosity of deposited sediment is volume of voids divided by the
      total volume of sample
    title: porosity
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{float} - {float} {unit}'
    slot_uri: MIXS:0000211
    multivalued: false
    alias: porosity
    owner: agriculture
    domain_of:
    - sediment
    - hydrocarbon resources-cores
    - agriculture
    range: string
    required: false
  texture:
    name: texture
    description: The relative proportion of different grain sizes of mineral particles
      in a soil, as described using a standard system; express as % sand (50 um to
      2 mm), silt (2 um to 50 um), and clay (<2 um) with textural name (e.g., silty
      clay loam) optional.
    title: texture
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000335
    multivalued: false
    alias: texture
    owner: agriculture
    domain_of:
    - agriculture
    range: quantity value
    required: false
  texture_meth:
    name: texture_meth
    description: Reference or method used in determining soil texture.
    title: texture method
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{PMID}|{DOI}|{URL}'
    slot_uri: MIXS:0000336
    multivalued: false
    alias: texture_meth
    owner: agriculture
    domain_of:
    - agriculture
    range: string
    required: false
  host_symbiont:
    name: host_symbiont
    description: The taxonomic name of the organism(s) found living in mutualistic,
      commensalistic, or parasitic symbiosis with the specific host.
    title: observed host symbionts
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0001298
    multivalued: true
    alias: host_symbiont
    owner: agriculture
    domain_of:
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - agriculture
    range: string
    required: false
  pres_animal_insect:
    name: pres_animal_insect
    description: The type and number of animals or insects present in the sampling
      space.
    title: presence of pets, animals, or insects
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000819
    multivalued: false
    alias: pres_animal_insect
    owner: agriculture
    domain_of:
    - built environment
    - agriculture
    range: string
    required: false
    pattern: ^(cat|dog|rodent|snake|other);\d+$
  plant_water_method:
    name: plant_water_method
    description: Description of the equipment or method used to distribute water to
      crops. This field accepts termed listed under irrigation process (http://purl.obolibrary.org/obo/AGRO_00000006).
      Multiple terms can be separated by pipes.
    title: plant water delivery method
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{termLabel} {[termID]}'
    slot_uri: MIXS:0001111
    multivalued: false
    alias: plant_water_method
    owner: agriculture
    domain_of:
    - food-farm environment
    - agriculture
    range: string
    required: false
  anim_water_method:
    name: anim_water_method
    description: Description of the equipment or method used to distribute water to
      livestock. This field accepts termed listed under water delivery equipment (http://opendata.inra.fr/EOL/EOL_0001653).
      Multiple terms can be separated by pipes.
    title: animal water delivery method
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{termLabel} {[termID]}'
    slot_uri: MIXS:0001115
    multivalued: true
    alias: anim_water_method
    owner: agriculture
    domain_of:
    - food-farm environment
    - agriculture
    range: string
    required: false
  farm_water_source:
    name: farm_water_source
    description: Source of water used on the farm for irrigation of crops or watering
      of livestock.
    title: farm watering water source
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0001110
    multivalued: true
    alias: farm_water_source
    owner: agriculture
    domain_of:
    - food-farm environment
    - agriculture
    range: farm_water_source_enum
    required: false
  water_source_shared:
    name: water_source_shared
    description: Other users sharing access to the same water source. Multiple terms
      can be separated by one or more pipes.
    title: water source shared
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0001176
    multivalued: true
    alias: water_source_shared
    owner: agriculture
    domain_of:
    - food-farm environment
    - agriculture
    range: water_source_shared_enum
    required: false
  water_pH:
    name: water_pH
    description: pH measurement of the sample, or liquid portion of sample, or aqueous
      phase of the fluid.
    title: water pH
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0001175
    multivalued: false
    alias: water_pH
    owner: agriculture
    domain_of:
    - food-farm environment
    - agriculture
    range: double
    required: false
  season:
    name: season
    description: The season when sampling occurred. Any of the four periods into which
      the year is divided by the equinoxes and solstices. This field accepts terms
      listed under season (http://purl.obolibrary.org/obo/NCIT_C94729).
    title: season
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{termLabel} {[termID]}'
    slot_uri: MIXS:0000829
    multivalued: false
    alias: season
    owner: agriculture
    domain_of:
    - food-farm environment
    - built environment
    - agriculture
    range: string
    required: false
  solar_irradiance:
    name: solar_irradiance
    description: The amount of solar energy that arrives at a specific area of a surface
      during a specific time interval
    title: solar irradiance
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000112
    multivalued: false
    alias: solar_irradiance
    owner: agriculture
    domain_of:
    - food-farm environment
    - air
    - agriculture
    range: quantity value
    required: false
  crop_yield:
    name: crop_yield
    description: Amount of crop produced per unit or area of land.
    title: crop yield
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{float}{unit}'
    slot_uri: MIXS:0001116
    multivalued: false
    alias: crop_yield
    owner: agriculture
    domain_of:
    - food-farm environment
    - agriculture
    range: string
    required: false
  season_humidity:
    name: season_humidity
    description: Average humidity of the region throughout the growing season.
    title: mean seasonal humidity
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0001148
    multivalued: false
    alias: season_humidity
    owner: agriculture
    domain_of:
    - food-farm environment
    - agriculture
    range: quantity value
    required: false
  humidity:
    name: humidity
    description: Amount of water vapour in the air, at the time of sampling
    title: humidity
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000100
    multivalued: false
    alias: humidity
    owner: agriculture
    domain_of:
    - food-farm environment
    - air
    - agriculture
    range: quantity value
    required: false
  adjacent_environment:
    name: adjacent_environment
    description: Description of the environmental system or features that are adjacent
      to the sampling site. This field accepts terms under ecosystem (http://purl.obolibrary.org/obo/ENVO_01001110)
      and human construction (http://purl.obolibrary.org/obo/ENVO_00000070). Multiple
      terms can be separated by pipes.
    title: environment adjacent to site
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{termLabel}{[termID]}'
    slot_uri: MIXS:0001121
    multivalued: true
    alias: adjacent_environment
    owner: agriculture
    domain_of:
    - food-farm environment
    - agriculture
    range: string
    required: false
  chem_administration:
    name: chem_administration
    description: List of chemical compounds administered to the host or site where
      sampling occurred, and when (e.g. Antibiotics, n fertilizer, air filter); can
      include multiple compounds. For chemical entities of biological interest ontology
      (chebi) (v 163), http://purl.bioontology.org/ontology/chebi
    title: chemical administration
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{termLabel} {[termID]};{timestamp}'
    slot_uri: MIXS:0000751
    multivalued: true
    alias: chem_administration
    owner: agriculture
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-farm environment
    - air
    - agriculture
    range: string
    required: true
  food_prod:
    name: food_prod
    description: Descriptors of the food production system or of the agricultural
      environment and growing conditions related to the farm production system, such
      as wild caught, organic, free-range, industrial, dairy, beef,  domestic or cultivated
      food production. This field accepts terms listed under food production (http://purl.obolibrary.org/obo/FOODON_03530206).
      Multiple terms may apply and can be separated by pipes.
    title: food production system characteristics
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{termLabel} {[termID]}'
    slot_uri: MIXS:0001211
    multivalued: true
    alias: food_prod
    owner: agriculture
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    - agriculture
    range: string
    required: false
  lot_number:
    name: lot_number
    description: 'A distinctive alpha-numeric identification code assigned by the
      manufacturer or distributor to a specific quantity of manufactured material
      or product within a batch. Synonym: Batch Number.  The submitter should provide
      lot number of the item followed by the item name for which the lot number was
      provided.'
    title: lot number
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{integer}, {text}'
    slot_uri: MIXS:0001147
    multivalued: true
    alias: lot_number
    owner: agriculture
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - agriculture
    range: string
    required: false
  fertilizer_admin:
    name: fertilizer_admin
    description: Type of fertilizer or amendment added to the soil or water for the
      purpose of improving substrate health and quality for plant growth. This field
      accepts terms listed under agronomic fertilizer (http://purl.obolibrary.org/obo/AGRO_00002062).
      Multiple terms may apply and can be separated by pipes, listing in reverse chronological
      order.
    title: fertilizer administration
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{termLabel} {[termID]}'
    slot_uri: MIXS:0001127
    multivalued: false
    alias: fertilizer_admin
    owner: agriculture
    domain_of:
    - food-farm environment
    - agriculture
    range: string
    required: false
  samp_stor_temp:
    name: samp_stor_temp
    description: Temperature at which sample was stored, e.g. -80 degree Celsius.
    title: sample storage temperature
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000110
    multivalued: false
    alias: samp_stor_temp
    owner: agriculture
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - agriculture
    range: quantity value
    required: false
  food_trav_mode:
    name: food_trav_mode
    description: A descriptor for the method of movement of food commodity along the
      food distribution system.  This field accepts terms listed under travel mode
      (http://purl.obolibrary.org/obo/GENEPIO_0001064). If the proper descrptor is
      not listed please use text to describe the mode of travel. Multiple terms can
      be separated by one or more pipes.
    title: food shipping transportation method
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{termLabel} {[termID]}'
    slot_uri: MIXS:0001137
    multivalued: true
    alias: food_trav_mode
    owner: agriculture
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - agriculture
    range: string
    required: false
  food_trav_vehic:
    name: food_trav_vehic
    description: A descriptor for the mobile machine which is used to transport food
      commodities along the food distribution system.  This field accepts terms listed
      under vehicle (http://purl.obolibrary.org/obo/ENVO_01000604). If the proper
      descrptor is not listed please use text to describe the mode of travel. Multiple
      terms can be separated by one or more pipes.
    title: Food shipping transportation vehicle
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}|{termLabel} {[termID]}'
    slot_uri: MIXS:0001138
    multivalued: true
    alias: food_trav_vehic
    owner: agriculture
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - agriculture
    range: string
    required: false
  farm_equip_san:
    name: farm_equip_san
    description: Method used to sanitize growing and harvesting equipment. This can
      including type and concentration of sanitizing solution.  Multiple terms can
      be separated by one or more pipes.
    title: farm equipment sanitization
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text} {float} {unit}'
    slot_uri: MIXS:0001124
    multivalued: true
    alias: farm_equip_san
    owner: agriculture
    domain_of:
    - food-farm environment
    - agriculture
    range: string
    required: false
  farm_equip:
    name: farm_equip
    description: List of equipment used for planting, fertilization, harvesting, irrigation,
      land levelling, residue management, weeding or transplanting during the growing
      season.  This field accepts terms listed under agricultural implement (http://purl.obolibrary.org/obo/AGRO_00000416).
      Multiple terms can be separated by pipes.
    title: farm equipment used
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{termLabel} {[termID]}'
    slot_uri: MIXS:0001126
    multivalued: true
    alias: farm_equip
    owner: agriculture
    domain_of:
    - food-farm environment
    - agriculture
    range: string
    required: false
  farm_equip_shared:
    name: farm_equip_shared
    description: List of planting, growing or harvesting equipment shared with other
      farms. This field accepts terms listed under agricultural implement (http://purl.obolibrary.org/obo/AGRO_00000416).
      Multiple terms can be separated by pipes.
    title: equipment shared with other farms
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{termLabel} {[termID]}'
    slot_uri: MIXS:0001123
    multivalued: true
    alias: farm_equip_shared
    owner: agriculture
    domain_of:
    - food-farm environment
    - agriculture
    range: string
    required: false
  food_harvest_proc:
    name: food_harvest_proc
    description: A harvesting process is a process which takes in some food material
      from an individual or community of plant or animal organisms in a given context
      and time, and outputs a precursor or consumable food product. This may include
      a part of an organism or the whole, and may involve killing the organism.
    title: Food harvesting process
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0001133
    multivalued: true
    alias: food_harvest_proc
    owner: agriculture
    domain_of:
    - food-farm environment
    - agriculture
    range: string
    required: false
  plant_struc:
    name: plant_struc
    description: Name of plant structure the sample was obtained from; for Plant Ontology
      (PO) (v releases/2017-12-14) terms, see http://purl.bioontology.org/ontology/PO,
      e.g. petiole epidermis (PO_0000051). If an individual flower is sampled, the
      sex of it can be recorded here.
    title: plant structure
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{termLabel} {[termID]}'
    slot_uri: MIXS:0001060
    multivalued: false
    alias: plant_struc
    owner: agriculture
    domain_of:
    - plant-associated
    - agriculture
    range: string
    required: false
  host_dry_mass:
    name: host_dry_mass
    description: Measurement of dry mass
    title: host dry mass
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000257
    multivalued: false
    alias: host_dry_mass
    owner: agriculture
    domain_of:
    - symbiont-associated
    - plant-associated
    - host-associated
    - food-farm environment
    - agriculture
    range: quantity value
    required: false
  ances_data:
    name: ances_data
    description: Information about either pedigree or other ancestral information
      description (e.g. parental variety in case of mutant or selection), e.g. A/3*B
      (meaning [(A x B) x B] x B)
    title: ancestral data
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0000247
    multivalued: false
    alias: ances_data
    owner: agriculture
    domain_of:
    - plant-associated
    - host-associated
    - food-farm environment
    - agriculture
    range: string
    required: false
  genetic_mod:
    name: genetic_mod
    description: Genetic modifications of the genome of an organism, which may occur
      naturally by spontaneous mutation, or be introduced by some experimental means,
      e.g. specification of a transgene or the gene knocked-out or details of transient
      transfection
    title: genetic modification
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{PMID}|{DOI}|{URL}|{text}'
    slot_uri: MIXS:0000859
    multivalued: false
    alias: genetic_mod
    owner: agriculture
    domain_of:
    - plant-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - agriculture
    range: string
    required: false
  Food_Product_type:
    name: Food_Product_type
    description: new food product categories and food products themselves
    title: Foodon product type
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0001184
    multivalued: false
    alias: Food_Product_type
    owner: agriculture
    domain_of:
    - agriculture
    range: string
    required: false
  Food_source:
    name: Food_source
    description: Type of plant or animal from which the food product or its major
      ingredient is derived or a chemical food source [FDA CFSAN 1995].
    title: Food source
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0001139
    multivalued: false
    alias: Food_source
    owner: agriculture
    domain_of:
    - agriculture
    range: string
    required: true
  spikein_strain:
    name: spikein_strain
    description: Taxonomic information about the spike-in organism(s) at the strain
      level. This field accepts terms under organism (http://purl.obolibrary.org/obo/NCIT_C14250).
      This field also accepts identification numbers from NCBI under https://www.ncbi.nlm.nih.gov/taxonomy.
      Multiple terms can be separated by pipes.
    title: spike-in microbial strain
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{termLabel} {[termID]}|{integer}'
    slot_uri: MIXS:0001170
    multivalued: true
    alias: spikein_strain
    owner: agriculture
    domain_of:
    - food-human foods
    - food-farm environment
    - food-animal and animal feed
    - agriculture
    range: string
    required: false
  organism_count:
    name: organism_count
    description: 'Total cell count of any organism (or group of organisms) per gram,
      volume or area of sample, should include name of organism followed by count.
      The method that was used for the enumeration (e.g. qPCR, atp, mpn, etc.) Should
      also be provided. (example: total prokaryotes; 3.5e7 cells per ml; qpcr)'
    title: organism count
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000103
    multivalued: true
    alias: organism_count
    owner: agriculture
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - built environment
    - air
    - agriculture
    range: organism_count_enum
    required: false
  size_frac_low:
    name: size_frac_low
    description: Refers to the mesh/pore size used to pre-filter/pre-sort the sample.
      Materials larger than the size threshold are excluded from the sample
    title: size-fraction lower threshold
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000735
    multivalued: false
    alias: size_frac_low
    owner: agriculture
    domain_of:
    - water
    - food-farm environment
    - agriculture
    range: quantity value
    required: false
  size_frac_up:
    name: size_frac_up
    description: Refers to the mesh/pore size used to retain the sample. Materials
      smaller than the size threshold are excluded from the sample
    title: size-fraction upper threshold
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000736
    multivalued: false
    alias: size_frac_up
    owner: agriculture
    domain_of:
    - water
    - food-farm environment
    - agriculture
    range: quantity value
    required: false
  cult_isol_date:
    name: cult_isol_date
    description: A culture isolation date is a date-time entity marking the end of
      a process in which a sample yields a positive result for the target microbial
      analyte(s) in the form of an isolated colony or colonies.
    title: culture isolation date
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0001181
    multivalued: false
    alias: cult_isol_date
    owner: agriculture
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - agriculture
    range: date
    required: false
  samp_pooling:
    name: samp_pooling
    description: Physical combination of several instances of like material, e.g.
      RNA extracted from samples or dishes of cell cultures into one big aliquot of
      cells. Please provide a short description of the samples that were pooled.
    title: sample pooling
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0001153
    multivalued: true
    alias: samp_pooling
    owner: agriculture
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - agriculture
    range: string
    required: false
  root_med_macronutr:
    name: root_med_macronutr
    description: Measurement of the culture rooting medium macronutrients (N,P, K,
      Ca, Mg, S); e.g. KH2PO4 (170¬†mg/L).
    title: rooting medium macronutrients
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{float} {unit}'
    slot_uri: MIXS:0000578
    multivalued: false
    alias: root_med_macronutr
    owner: agriculture
    domain_of:
    - plant-associated
    - food-farm environment
    - agriculture
    range: string
    required: false
  root_med_carbon:
    name: root_med_carbon
    description: Source of organic carbon in the culture rooting medium; e.g. sucrose.
    title: rooting medium carbon
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{float} {unit}'
    slot_uri: MIXS:0000577
    multivalued: false
    alias: root_med_carbon
    owner: agriculture
    domain_of:
    - plant-associated
    - food-farm environment
    - agriculture
    range: string
    required: false
  root_med_ph:
    name: root_med_ph
    description: pH measurement of the culture rooting medium; e.g. 5.5.
    title: rooting medium pH
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0001062
    multivalued: false
    alias: root_med_ph
    owner: agriculture
    domain_of:
    - plant-associated
    - food-farm environment
    - agriculture
    range: double
    required: false
  soil_depth:
    name: soil_depth
    description: The vertical distance below local surface, e.g. For sediment or soil
      samples depth is measured from sediment or soil surface, respectively. Depth
      can be reported as an interval for subsurface samples.
    title: soil depth
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000018
    multivalued: false
    alias: soil_depth
    owner: agriculture
    domain_of:
    - agriculture
    range: quantity value
    required: false
  water_temp_regm:
    name: water_temp_regm
    description: Information about treatment involving an exposure to water with varying
      degree of temperature, treatment regimen including how many times the treatment
      was repeated, how long each treatment lasted, and the start and end time of
      the entire treatment; can include multiple regimens
    title: water temperature regimen
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{float} {unit};{Rn/start_time/end_time/duration}'
    slot_uri: MIXS:0000590
    multivalued: true
    alias: water_temp_regm
    owner: agriculture
    domain_of:
    - plant-associated
    - agriculture
    range: string
    required: false
  watering_regm:
    name: watering_regm
    description: Information about treatment involving an exposure to watering frequencies,
      treatment regimen including how many times the treatment was repeated, how long
      each treatment lasted, and the start and end time of the entire treatment; can
      include multiple regimens
    title: watering regimen
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{float} {unit};{Rn/start_time/end_time/duration}'
    slot_uri: MIXS:0000591
    multivalued: true
    alias: watering_regm
    owner: agriculture
    domain_of:
    - plant-associated
    - agriculture
    range: string
    required: false
  standing_water_regm:
    name: standing_water_regm
    description: Treatment involving an exposure to standing water during a plant's
      life span, types can be flood water or standing water, treatment regimen including
      how many times the treatment was repeated, how long each treatment lasted, and
      the start and end time of the entire treatment; can include multiple regimens
    title: standing water regimen
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{Rn/start_time/end_time/duration}'
    slot_uri: MIXS:0001069
    multivalued: true
    alias: standing_water_regm
    owner: agriculture
    domain_of:
    - plant-associated
    - agriculture
    range: string
    required: false
  gaseous_environment:
    name: gaseous_environment
    description: Use of conditions with differing gaseous environments; should include
      the name of gaseous compound, amount administered, treatment duration, interval
      and total experimental duration; can include multiple gaseous environment regimens
    title: gaseous environment
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}'
    slot_uri: MIXS:0000558
    multivalued: true
    alias: gaseous_environment
    owner: agriculture
    domain_of:
    - plant-associated
    - agriculture
    range: string
    required: false
  fungicide_regm:
    name: fungicide_regm
    description: Information about treatment involving use of fungicides; should include
      the name of fungicide, amount administered, treatment regimen including how
      many times the treatment was repeated, how long each treatment lasted, and the
      start and end time of the entire treatment; can include multiple fungicide regimens
    title: fungicide regimen
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}'
    slot_uri: MIXS:0000557
    multivalued: true
    alias: fungicide_regm
    owner: agriculture
    domain_of:
    - plant-associated
    - agriculture
    range: string
    required: false
  climate_environment:
    name: climate_environment
    description: Treatment involving an exposure to a particular climate; treatment
      regimen including how many times the treatment was repeated, how long each treatment
      lasted, and the start and end time of the entire treatment; can include multiple
      climates
    title: climate environment
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{Rn/start_time/end_time/duration}'
    slot_uri: MIXS:0001040
    multivalued: true
    alias: climate_environment
    owner: agriculture
    domain_of:
    - plant-associated
    - agriculture
    range: string
    required: false
  herbicide_regm:
    name: herbicide_regm
    description: Information about treatment involving use of herbicides; information
      about treatment involving use of growth hormones; should include the name of
      herbicide, amount administered, treatment regimen including how many times the
      treatment was repeated, how long each treatment lasted, and the start and end
      time of the entire treatment; can include multiple regimens
    title: herbicide regimen
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}'
    slot_uri: MIXS:0000561
    multivalued: true
    alias: herbicide_regm
    owner: agriculture
    domain_of:
    - plant-associated
    - agriculture
    range: string
    required: false
  non_mineral_nutr_regm:
    name: non_mineral_nutr_regm
    description: Information about treatment involving the exposure of plant to non-mineral
      nutrient such as oxygen, hydrogen or carbon; should include the name of non-mineral
      nutrient, amount administered, treatment regimen including how many times the
      treatment was repeated, how long each treatment lasted, and the start and end
      time of the entire treatment; can include multiple non-mineral nutrient regimens
    title: non-mineral nutrient regimen
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{float} {unit};{period};{interval};{period}'
    slot_uri: MIXS:0000571
    multivalued: true
    alias: non_mineral_nutr_regm
    owner: agriculture
    domain_of:
    - agriculture
    range: string
    required: false
  pesticide_regm:
    name: pesticide_regm
    description: Information about treatment involving use of insecticides; should
      include the name of pesticide, amount administered, treatment regimen including
      how many times the treatment was repeated, how long each treatment lasted, and
      the start and end time of the entire treatment; can include multiple pesticide
      regimens
    title: pesticide regimen
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}'
    slot_uri: MIXS:0000573
    multivalued: true
    alias: pesticide_regm
    owner: agriculture
    domain_of:
    - plant-associated
    - agriculture
    range: string
    required: false
  ph_regm:
    name: ph_regm
    description: Information about treatment involving exposure of plants to varying
      levels of ph of the growth media, treatment regimen including how many times
      the treatment was repeated, how long each treatment lasted, and the start and
      end time of the entire treatment; can include multiple regimen
    title: pH regimen
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{float};{Rn/start_time/end_time/duration}'
    slot_uri: MIXS:0001056
    multivalued: true
    alias: ph_regm
    owner: agriculture
    domain_of:
    - plant-associated
    - agriculture
    range: string
    required: false
  salt_regm:
    name: salt_regm
    description: Information about treatment involving use of salts as supplement
      to liquid and soil growth media; should include the name of salt, amount administered,
      treatment regimen including how many times the treatment was repeated, how long
      each treatment lasted, and the start and end time of the entire treatment; can
      include multiple salt regimens
    title: salt regimen
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}'
    slot_uri: MIXS:0000582
    multivalued: true
    alias: salt_regm
    owner: agriculture
    domain_of:
    - plant-associated
    - agriculture
    range: string
    required: false
  season_environment:
    name: season_environment
    description: Treatment involving an exposure to a particular season (e.g. Winter,
      summer, rabi, rainy etc.), treatment regimen including how many times the treatment
      was repeated, how long each treatment lasted, and the start and end time of
      the entire treatment
    title: seasonal environment
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{Rn/start_time/end_time/duration}'
    slot_uri: MIXS:0001068
    multivalued: true
    alias: season_environment
    owner: agriculture
    domain_of:
    - plant-associated
    - agriculture
    range: string
    required: false
  perturbation:
    name: perturbation
    description: Type of perturbation, e.g. chemical administration, physical disturbance,
      etc., coupled with perturbation regimen including how many times the perturbation
      was repeated, how long each perturbation lasted, and the start and end time
      of the entire perturbation period; can include multiple perturbation types
    title: perturbation
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{Rn/start_time/end_time/duration}'
    slot_uri: MIXS:0000754
    multivalued: true
    alias: perturbation
    owner: agriculture
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-farm environment
    - food-animal and animal feed
    - air
    - agriculture
    range: string
    required: false
  samp_store_dur:
    name: samp_store_dur
    description: Duration for which the sample was stored
    title: sample storage duration
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{duration}'
    slot_uri: MIXS:0000116
    multivalued: false
    alias: samp_store_dur
    owner: agriculture
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    - agriculture
    range: string
    required: true
  samp_store_loc:
    name: samp_store_loc
    description: Location at which sample was stored, usually name of a specific freezer/room
    title: sample storage location
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0000755
    multivalued: false
    alias: samp_store_loc
    owner: agriculture
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    - agriculture
    range: string
    required: true
  samp_collect_device:
    name: samp_collect_device
    description: The device used to collect an environmental sample. This field accepts
      terms listed under environmental sampling device (http://purl.obolibrary.org/obo/ENVO).
      This field also accepts terms listed under specimen collection device (http://purl.obolibrary.org/obo/GENEPIO_0002094).
    title: sample collection device
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{termLabel} {[termID]}|{text}'
    slot_uri: MIXS:0000002
    multivalued: false
    alias: samp_collect_device
    owner: agriculture
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - agriculture
    range: string
    required: true
  host_age:
    name: host_age
    description: Age of host at the time of sampling; relevant scale depends on species
      and study, e.g. Could be seconds for amoebae or centuries for trees
    title: host age
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000255
    multivalued: false
    alias: host_age
    owner: agriculture
    domain_of:
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-farm environment
    - agriculture
    range: quantity value
    required: true
  host_common_name:
    name: host_common_name
    description: Common name of the host.
    title: host common name
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0000248
    multivalued: false
    alias: host_common_name
    owner: agriculture
    domain_of:
    - symbiont-associated
    - plant-associated
    - host-associated
    - agriculture
    range: string
    required: true
  host_genotype:
    name: host_genotype
    description: Observed genotype
    title: host genotype
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0000365
    multivalued: false
    alias: host_genotype
    owner: agriculture
    domain_of:
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-farm environment
    - agriculture
    range: string
    required: true
  host_height:
    name: host_height
    description: The height of subject
    title: host height
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000264
    multivalued: false
    alias: host_height
    owner: agriculture
    domain_of:
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-farm environment
    - agriculture
    range: quantity value
    required: true
  host_subspecf_genlin:
    name: host_subspecf_genlin
    description: Information about the genetic distinctness of the host organism below
      the subspecies level e.g., serovar, serotype, biotype, ecotype, variety, cultivar,
      or any relevant genetic typing schemes like Group I plasmid. Subspecies should
      not be recorded in this term, but in the NCBI taxonomy. Supply both the lineage
      name and the lineage rank separated by a colon, e.g., biovar:abc123.
    title: host subspecific genetic lineage
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{rank name}:{text}'
    slot_uri: MIXS:0001318
    multivalued: true
    alias: host_subspecf_genlin
    owner: agriculture
    domain_of:
    - plant-associated
    - host-associated
    - food-farm environment
    - agriculture
    range: string
    required: false
  host_length:
    name: host_length
    description: The length of subject
    title: host length
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000256
    multivalued: false
    alias: host_length
    owner: agriculture
    domain_of:
    - symbiont-associated
    - plant-associated
    - host-associated
    - food-farm environment
    - agriculture
    range: quantity value
    required: true
  host_life_stage:
    name: host_life_stage
    description: Description of life stage of host
    title: host life stage
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0000251
    multivalued: false
    alias: host_life_stage
    owner: agriculture
    domain_of:
    - symbiont-associated
    - plant-associated
    - host-associated
    - agriculture
    range: string
    required: true
  host_phenotype:
    name: host_phenotype
    description: Phenotype of human or other host. For phenotypic quality ontology
      (pato) (v 2018-03-27) terms, please see http://purl.bioontology.org/ontology/pato.
      For Human Phenotype Ontology (HP) (v 2018-06-13) please see http://purl.bioontology.org/ontology/HP
    title: host phenotype
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{termLabel} {[termID]}'
    slot_uri: MIXS:0000874
    multivalued: false
    alias: host_phenotype
    owner: agriculture
    domain_of:
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-farm environment
    - agriculture
    range: string
    required: true
  host_taxid:
    name: host_taxid
    description: NCBI taxon id of the host, e.g. 9606
    title: host taxid
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{NCBI taxid}'
    slot_uri: MIXS:0000250
    multivalued: false
    alias: host_taxid
    owner: agriculture
    domain_of:
    - symbiont-associated
    - plant-associated
    - host-associated
    - food-farm environment
    - agriculture
    range: string
    required: true
  host_tot_mass:
    name: host_tot_mass
    description: Total mass of the host at collection, the unit depends on host
    title: host total mass
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000263
    multivalued: false
    alias: host_tot_mass
    owner: agriculture
    domain_of:
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-farm environment
    - agriculture
    range: quantity value
    required: true
  plant_product:
    name: plant_product
    description: Substance produced by the plant, where the sample was obtained from
    title: plant product
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0001058
    multivalued: false
    alias: plant_product
    owner: agriculture
    domain_of:
    - plant-associated
    - agriculture
    range: string
    required: false
  oxy_stat_samp:
    name: oxy_stat_samp
    description: Oxygenation status of sample
    title: oxygenation status of sample
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000753
    multivalued: false
    alias: oxy_stat_samp
    owner: agriculture
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    - agriculture
    range: oxy_stat_samp_enum
    required: false
  assembly_quality:
    name: assembly_quality
    description: Tool(s) used for assembly, including version number and parameters
    title: assembly quality
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{software};{version};{parameters}'
    slot_uri: MIXS:0000058
    multivalued: false
    alias: assembly_quality
    owner: agriculture
    domain_of:
    - agriculture
    range: string
    required: false
  url:
    name: url
    description: A related resource that is referenced, cited, or otherwise associated
      to the sequence.
    title: relevant electronic resources
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{URL}'
    slot_uri: MIXS:0000091
    multivalued: true
    alias: url
    owner: agriculture
    domain_of:
    - agriculture
    range: string
    required: false
  fao_class:
    name: fao_class
    description: Soil classification from the FAO World Reference Database for Soil
      Resources. The list can be found at http://www.fao.org/nr/land/sols/soil/wrb-soil-maps/reference-groups
    title: soil_taxonomic/FAO classification
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0001083
    multivalued: false
    alias: fao_class
    owner: agriculture
    domain_of:
    - soil
    - agriculture
    range: fao_class_enum
    required: false
  local_class:
    name: local_class
    description: Soil classification based on local soil classification system
    title: soil_taxonomic/local classification
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0000330
    multivalued: false
    alias: local_class
    owner: agriculture
    domain_of:
    - soil
    - agriculture
    range: string
    required: false
  local_class_meth:
    name: local_class_meth
    description: Reference or method used in determining the local soil classification
    title: soil_taxonomic/local classification method
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{PMID}|{DOI}|{URL}'
    slot_uri: MIXS:0000331
    multivalued: false
    alias: local_class_meth
    owner: agriculture
    domain_of:
    - soil
    - agriculture
    range: string
    required: false
  soil_type:
    name: soil_type
    description: Description of the soil type or classification. This field accepts
      terms under soil (http://purl.obolibrary.org/obo/ENVO_00001998).  Multiple terms
      can be separated by pipes.
    title: soil type
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{termLabel} {[termID]}'
    slot_uri: MIXS:0000332
    multivalued: false
    alias: soil_type
    owner: agriculture
    domain_of:
    - soil
    - food-farm environment
    - agriculture
    range: string
    required: true
  soil_type_meth:
    name: soil_type_meth
    description: Reference or method used in determining soil series name or other
      lower-level classification
    title: soil type method
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{PMID}|{DOI}|{URL}'
    slot_uri: MIXS:0000334
    multivalued: false
    alias: soil_type_meth
    owner: agriculture
    domain_of:
    - soil
    - food-farm environment
    - agriculture
    range: string
    required: true
  horizon:
    name: horizon
    description: Specific layer in the land area which measures parallel to the soil
      surface and possesses physical characteristics which differ from the layers
      above and beneath
    title: horizon
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0001082
    multivalued: false
    alias: horizon
    owner: agriculture
    domain_of:
    - agriculture
    range: horizon_enum
    required: false
  horizon_meth:
    name: horizon_meth
    description: Reference or method used in determining the horizon
    title: soil horizon method
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{PMID}|{DOI}|{URL}'
    slot_uri: MIXS:0000321
    multivalued: false
    alias: horizon_meth
    owner: agriculture
    domain_of:
    - soil
    - agriculture
    range: string
    required: false
  link_class_info:
    name: link_class_info
    description: Link to digitized soil maps or other soil classification information
    title: link to classification information
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{PMID}|{DOI}|{URL}'
    slot_uri: MIXS:0000329
    multivalued: false
    alias: link_class_info
    owner: agriculture
    domain_of:
    - soil
    - agriculture
    range: string
    required: false
  previous_land_use:
    name: previous_land_use
    description: Previous land use and dates
    title: history/previous land use
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{timestamp}'
    slot_uri: MIXS:0000315
    multivalued: false
    alias: previous_land_use
    owner: agriculture
    domain_of:
    - soil
    - food-farm environment
    - agriculture
    range: string
    required: false
  previous_land_use_meth:
    name: previous_land_use_meth
    description: Reference or method used in determining previous land use and dates
    title: history/previous land use method
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{PMID|DOI|URL}'
    slot_uri: MIXS:0000316
    multivalued: false
    alias: previous_land_use_meth
    owner: agriculture
    domain_of:
    - agriculture
    range: string
    required: false
  crop_rotation:
    name: crop_rotation
    description: Whether or not crop is rotated, and if yes, rotation schedule
    title: history/crop rotation
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{boolean};{Rn/start_time/end_time/duration}'
    slot_uri: MIXS:0000318
    multivalued: false
    alias: crop_rotation
    owner: agriculture
    domain_of:
    - soil
    - food-farm environment
    - agriculture
    range: string
    required: false
  agrochem_addition:
    name: agrochem_addition
    description: Addition of fertilizers, pesticides, etc. - amount and time of applications
    title: history/agrochemical additions
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{float} {unit};{timestamp}'
    slot_uri: MIXS:0000639
    multivalued: true
    alias: agrochem_addition
    owner: agriculture
    domain_of:
    - soil
    - agriculture
    range: string
    required: false
  tillage:
    name: tillage
    description: Note method(s) used for tilling
    title: history/tillage
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0001081
    multivalued: true
    alias: tillage
    owner: agriculture
    domain_of:
    - soil
    - food-farm environment
    - agriculture
    range: tillage_enum
    required: false
  fire:
    name: fire
    description: Historical and/or physical evidence of fire
    title: history/fire
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0001086
    multivalued: false
    alias: fire
    owner: agriculture
    domain_of:
    - soil
    - agriculture
    range: date
    required: false
  flooding:
    name: flooding
    description: Historical and/or physical evidence of flooding
    title: history/flooding
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000319
    multivalued: false
    alias: flooding
    owner: agriculture
    domain_of:
    - soil
    - agriculture
    range: date
    required: false
  extreme_event:
    name: extreme_event
    description: Unusual physical events that may have affected microbial populations
    title: history/extreme events
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000320
    multivalued: false
    alias: extreme_event
    owner: agriculture
    domain_of:
    - soil
    - agriculture
    range: date
    required: false
  link_climate_info:
    name: link_climate_info
    description: Link to climate resource
    title: link to climate information
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{PMID}|{DOI}|{URL}'
    slot_uri: MIXS:0000328
    multivalued: false
    alias: link_climate_info
    owner: agriculture
    domain_of:
    - soil
    - agriculture
    range: string
    required: false
  annual_temp:
    name: annual_temp
    description: Mean annual temperature
    title: mean annual temperature
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000642
    multivalued: false
    alias: annual_temp
    owner: agriculture
    domain_of:
    - soil
    - agriculture
    range: quantity value
    required: false
  season_temp:
    name: season_temp
    description: Mean seasonal temperature
    title: mean seasonal temperature
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000643
    multivalued: false
    alias: season_temp
    owner: agriculture
    domain_of:
    - soil
    - food-farm environment
    - agriculture
    range: quantity value
    required: false
  annual_precpt:
    name: annual_precpt
    description: The average of all annual precipitation values known, or an estimated
      equivalent value derived by such methods as regional indexes or Isohyetal maps.
    title: mean annual precipitation
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000644
    multivalued: false
    alias: annual_precpt
    owner: agriculture
    domain_of:
    - soil
    - agriculture
    range: quantity value
    required: false
  season_precpt:
    name: season_precpt
    description: The average of all seasonal precipitation values known, or an estimated
      equivalent value derived by such methods as regional indexes or Isohyetal maps.
    title: mean seasonal precipitation
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000645
    multivalued: false
    alias: season_precpt
    owner: agriculture
    domain_of:
    - soil
    - food-farm environment
    - agriculture
    range: quantity value
    required: false
  cur_land_use:
    name: cur_land_use
    description: Present state of sample site
    title: current land use
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0001080
    multivalued: false
    alias: cur_land_use
    owner: agriculture
    domain_of:
    - soil
    - agriculture
    range: cur_land_use_enum
    required: false
  slope_gradient:
    name: slope_gradient
    description: Commonly called 'slope'. The angle between ground surface and a horizontal
      line (in percent). This is the direction that overland water would flow. This
      measure is usually taken with a hand level meter or clinometer
    title: slope gradient
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000646
    multivalued: false
    alias: slope_gradient
    owner: agriculture
    domain_of:
    - soil
    - agriculture
    range: quantity value
    required: false
  slope_aspect:
    name: slope_aspect
    description: The direction a slope faces. While looking down a slope use a compass
      to record the direction you are facing (direction or degrees); e.g., nw or 315
      degrees. This measure provides an indication of sun and wind exposure that will
      influence soil temperature and evapotranspiration.
    title: slope aspect
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000647
    multivalued: false
    alias: slope_aspect
    owner: agriculture
    domain_of:
    - soil
    - agriculture
    range: quantity value
    required: false
  profile_position:
    name: profile_position
    description: Cross-sectional position in the hillslope where sample was collected.sample
      area position in relation to surrounding areas
    title: profile position
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0001084
    multivalued: false
    alias: profile_position
    owner: agriculture
    domain_of:
    - soil
    - agriculture
    range: profile_position_enum
    required: false
  drainage_class:
    name: drainage_class
    description: Drainage classification from a standard system such as the USDA system
    title: drainage classification
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0001085
    multivalued: false
    alias: drainage_class
    owner: agriculture
    domain_of:
    - soil
    - agriculture
    range: drainage_class_enum
    required: false
  store_cond:
    name: store_cond
    description: Explain how and for how long the soil sample was stored before DNA
      extraction (fresh/frozen/other).
    title: storage conditions
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{duration}'
    slot_uri: MIXS:0000327
    multivalued: false
    alias: store_cond
    owner: agriculture
    domain_of:
    - soil
    - agriculture
    range: string
    required: true
  ph_meth:
    name: ph_meth
    description: Reference or method used in determining ph
    title: pH method
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{PMID}|{DOI}|{URL}'
    slot_uri: MIXS:0001106
    multivalued: false
    alias: ph_meth
    owner: agriculture
    domain_of:
    - soil
    - food-farm environment
    - agriculture
    range: string
    required: false
  cur_vegetation:
    name: cur_vegetation
    description: Vegetation classification from one or more standard classification
      systems, or agricultural crop
    title: current vegetation
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0000312
    multivalued: false
    alias: cur_vegetation
    owner: agriculture
    domain_of:
    - soil
    - agriculture
    range: string
    required: false
  cur_vegetation_meth:
    name: cur_vegetation_meth
    description: Reference or method used in vegetation classification
    title: current vegetation method
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{PMID}|{DOI}|{URL}'
    slot_uri: MIXS:0000314
    multivalued: false
    alias: cur_vegetation_meth
    owner: agriculture
    domain_of:
    - soil
    - agriculture
    range: string
    required: false
  tot_org_carb:
    name: tot_org_carb
    description: 'Definition for soil: total organic carbon content of the soil, definition
      otherwise: total organic carbon content'
    title: total organic carbon
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000533
    multivalued: false
    alias: tot_org_carb
    owner: agriculture
    domain_of:
    - soil
    - sediment
    - microbial mat_biofilm
    - food-farm environment
    - agriculture
    range: quantity value
    required: false
  tot_org_c_meth:
    name: tot_org_c_meth
    description: Reference or method used in determining total organic carbon
    title: total organic carbon method
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{PMID}|{DOI}|{URL}'
    slot_uri: MIXS:0000337
    multivalued: false
    alias: tot_org_c_meth
    owner: agriculture
    domain_of:
    - soil
    - food-farm environment
    - agriculture
    range: string
    required: false
  tot_nitro:
    name: tot_nitro
    description: 'Total nitrogen concentration of water samples, calculated by: total
      nitrogen = total dissolved nitrogen + particulate nitrogen. Can also be measured
      without filtering, reported as nitrogen'
    title: total nitrogen concentration
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000102
    multivalued: false
    alias: tot_nitro
    owner: agriculture
    domain_of:
    - water
    - wastewater_sludge
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - agriculture
    range: quantity value
    required: false
  tot_n_meth:
    name: tot_n_meth
    description: Reference or method used in determining the total nitrogen
    title: total nitrogen method
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{PMID|DOI|URL}'
    slot_uri: MIXS:0000338
    multivalued: false
    alias: tot_n_meth
    owner: agriculture
    domain_of:
    - agriculture
    range: string
    required: false
  microbial_biomass:
    name: microbial_biomass
    description: The part of the organic matter in the soil that constitutes living
      microorganisms smaller than 5-10 micrometer. If you keep this, you would need
      to have correction factors used for conversion to the final units
    title: microbial biomass
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000650
    multivalued: false
    alias: microbial_biomass
    owner: agriculture
    domain_of:
    - soil
    - agriculture
    range: quantity value
    required: true
  microbial_biomass_meth:
    name: microbial_biomass_meth
    description: Reference or method used in determining microbial biomass
    title: microbial biomass method
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{PMID|DOI|URL}'
    slot_uri: MIXS:0000339
    multivalued: false
    alias: microbial_biomass_meth
    owner: agriculture
    domain_of:
    - agriculture
    range: string
    required: true
  heavy_metals_meth:
    name: heavy_metals_meth
    description: Reference or method used in determining heavy metals
    title: extreme_unusual_properties/heavy metals method
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{PMID}|{DOI}|{URL}'
    slot_uri: MIXS:0000343
    multivalued: false
    alias: heavy_metals_meth
    owner: agriculture
    domain_of:
    - soil
    - agriculture
    range: string
    required: false
  tot_car:
    name: tot_car
    description: Total carbon content
    title: total carbon
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000525
    multivalued: false
    alias: tot_car
    owner: agriculture
    domain_of:
    - agriculture
    range: quantity value
    required: false
  tot_phos:
    name: tot_phos
    description: Total amount or concentration of phosphate
    title: total phosphorous
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000689
    multivalued: false
    alias: tot_phos
    owner: agriculture
    domain_of:
    - agriculture
    range: quantity value
    required: false
  sieving:
    name: sieving
    description: Collection design of pooled samples and/or sieve size and amount
      of sample sieved
    title: composite design/sieving
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{{text}|{float} {unit}};{float} {unit}'
    slot_uri: MIXS:0000322
    multivalued: false
    alias: sieving
    owner: agriculture
    domain_of:
    - soil
    - agriculture
    range: string
    required: true
  pool_dna_extracts:
    name: pool_dna_extracts
    description: Indicate whether multiple DNA extractions were mixed. If the answer
      yes, the number of extracts that were pooled should be given
    title: pooling of DNA extracts (if done)
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{boolean};{integer}'
    slot_uri: MIXS:0000325
    multivalued: false
    alias: pool_dna_extracts
    owner: agriculture
    domain_of:
    - soil
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    - agriculture
    range: string
    required: true
  misc_param:
    name: misc_param
    description: Any other measurement performed or parameter collected, that is not
      listed here
    title: miscellaneous parameter
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{float} {unit}'
    slot_uri: MIXS:0000752
    multivalued: true
    alias: misc_param
    owner: agriculture
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - air
    - agriculture
    range: string
    required: false