Class: Food-animalAndAnimalFeed
food-animal and animal feed
URI: MIXS:Food-animalAndAnimalFeed
Inheritance
- Food-animalAndAnimalFeed
- Food-animalAndAnimalFeedMIGSEukaryote [ MIGSEukaryote]
- Food-animalAndAnimalFeedMIGSBacteria [ MIGSBacteria]
- Food-animalAndAnimalFeedMIGSPlant [ MIGSPlant]
- Food-animalAndAnimalFeedMIGSVirus [ MIGSVirus]
- Food-animalAndAnimalFeedMIGSOrg [ MIGSOrg]
- Food-animalAndAnimalFeedMIMS [ MIMS]
- Food-animalAndAnimalFeedMIMARKSSpecimen [ MIMARKSSpecimen]
- Food-animalAndAnimalFeedMIMARKSSurvey [ MIMARKSSurvey]
- Food-animalAndAnimalFeedMISAG [ MISAG]
- Food-animalAndAnimalFeedMIMAG [ MIMAG]
- Food-animalAndAnimalFeedMIUVIG [ MIUVIG]
Slots
Name | Cardinality and Range | Description | Inheritance |
---|---|---|---|
lat_lon | 0..1 String |
The geographical origin of the sample as defined by latitude and longitude | direct |
depth | 0..1 QuantityValue |
The vertical distance below local surface, e | direct |
alt | 0..1 QuantityValue |
Altitude is a term used to identify heights of objects such as airplanes, spa... | direct |
elev | 0..1 QuantityValue |
Elevation of the sampling site is its height above a fixed reference point, m... | direct |
temp | 0..1 QuantityValue |
Temperature of the sample at the time of sampling | direct |
geo_loc_name | 0..1 String |
The geographical origin of the sample as defined by the country or sea name f... | direct |
collection_date | 0..1 Date |
The time of sampling, either as an instance (single point in time) or interva... | direct |
env_broad_scale | 0..1 String |
Report the major environmental system the sample or specimen came from | direct |
env_local_scale | 0..1 String |
Report the entity or entities which are in the sample or specimen’s local vic... | direct |
env_medium | 0..1 String |
Report the environmental material(s) immediately surrounding the sample or sp... | direct |
samp_collect_device | 0..1 String |
The device used to collect an environmental sample | direct |
organism_count | 0..* OrganismCountEnum |
Total cell count of any organism (or group of organisms) per gram, volume or ... | direct |
spikein_count | 0..1 SpikeinCountEnum |
Total cell count of any organism (or group of organisms) per gram, volume or ... | direct |
samp_stor_temp | 0..1 QuantityValue |
Temperature at which sample was stored, e | direct |
samp_stor_dur | 0..1 String |
Duration for which the sample was stored | direct |
pool_dna_extracts | 0..1 String |
Indicate whether multiple DNA extractions were mixed | direct |
samp_stor_loc | 0..1 String |
Location at which sample was stored, usually name of a specific freezer/room | direct |
samp_transport_cont | 0..1 SampTransportContEnum |
Conatiner in which the sample was stored during transport | direct |
perturbation | 0..* String |
Type of perturbation, e | direct |
coll_site_geo_feat | 0..1 String |
Text or terms that describe the geographic feature where the food sample was ... | direct |
food_origin | 0..1 String |
A reference to a place on the Earth, by its name or by its geographical locat... | direct |
food_prod | 0..* String |
Descriptors of the food production system or of the agricultural environment ... | direct |
food_product_type | 0..* String |
A food product type is a class of food products that is differentiated by its... | direct |
food_source | 0..1 String |
Type of plant or animal from which the food product or its major ingredient i... | direct |
IFSAC_category | 0..* String |
The IFSAC food categorization scheme has five distinct levels to which foods ... | direct |
intended_consumer | 0..* String |
Food consumer type, human or animal, for which the food product is produced a... | direct |
samp_purpose | 0..1 String |
The reason that the sample was collected | direct |
animal_am | 0..1 String |
The name(s) (generic or brand) of the antimicrobial(s) given to the food anim... | direct |
animal_am_dur | 0..1 String |
The duration of time (days) that the antimicrobial was administered to the fo... | direct |
animal_am_freq | 0..1 QuantityValue |
The frequency per day that the antimicrobial was adminstered to the food anim... | direct |
animal_am_route | 0..1 String |
The route by which the antimicrobial is adminstered into the body of the food... | direct |
animal_am_use | 0..1 String |
The prescribed intended use of or the condition treated by the antimicrobial ... | direct |
animal_body_cond | 0..1 AnimalBodyCondEnum |
Body condition scoring is a production management tool used to evaluate overa... | direct |
animal_diet | 0..* String |
If the isolate is from a food animal, the type of diet eaten by the food anim... | direct |
animal_feed_equip | 0..* String |
Description of the feeding equipment used for livestock | direct |
animal_group_size | 0..1 Integer |
The number of food animals of the same species that are maintained together a... | direct |
animal_housing | 0..* String |
Description of the housing system of the livestock | direct |
animal_sex | 0..1 AnimalSexEnum |
The sex and reproductive status of the food animal | direct |
bacterial_density | 0..1 QuantityValue |
Number of bacteria in sample, as defined by bacteria density (http://purl | direct |
cons_food_stor_dur | 0..1 String |
The storage duration of the food commodity by the consumer, prior to onset of... | direct |
cons_food_stor_temp | 0..1 String |
Temperature at which food commodity was stored by the consumer, prior to onse... | direct |
cons_purch_date | 0..1 Date |
The date a food product was purchased by consumer | direct |
cons_qty_purchased | 0..1 String |
The quantity of food purchased by consumer | direct |
cult_isol_date | 0..1 Date |
A culture isolation date is a date-time entity marking the end of a process i... | direct |
cult_result | 0..1 CultResultEnum |
Any result of a bacterial culture experiment reported as a binary assessment ... | direct |
cult_result_org | 0..* String |
Taxonomic information about the cultured organism(s) | direct |
cult_target | 0..* String |
The target microbial analyte in terms of investigation scope | direct |
enrichment_protocol | 0..1 String |
The microbiological workflow or protocol followed to test for the presence or... | direct |
food_additive | 0..* String |
A substance or substances added to food to maintain or improve safety and fre... | direct |
food_contact_surf | 0..* String |
The specific container or coating materials in direct contact with the food | direct |
food_contain_wrap | 0..1 String |
Type of container or wrapping defined by the main container material, the con... | direct |
food_cooking_proc | 0..* String |
The transformation of raw food by the application of heat | direct |
food_dis_point | 0..* String |
A reference to a place on the Earth, by its name or by its geographical locat... | direct |
food_dis_point_city | 0..1 String |
A reference to a place on the Earth, by its name or by its geographical locat... | direct |
food_ingredient | 0..* String |
In this field, please list individual ingredients for multi-component food [F... | direct |
food_pack_capacity | 0..1 QuantityValue |
The maximum number of product units within a package | direct |
food_pack_integrity | 0..* String |
A term label and term id to describe the state of the packing material and te... | direct |
food_pack_medium | 0..* String |
The medium in which the food is packed for preservation and handling or the m... | direct |
food_preserv_proc | 0..* String |
The methods contributing to the prevention or retardation of microbial, enzym... | direct |
food_prior_contact | 0..* String |
The material the food contacted (e | direct |
food_prod_synonym | 0..* String |
Other names by which the food product is known by (e | direct |
food_product_qual | 0..1 String |
Descriptors for describing food visually or via other senses, which is useful... | direct |
food_quality_date | 0..1 String |
The date recommended for the use of the product while at peak quality, this d... | direct |
food_source_age | 0..1 QuantityValue |
The age of the food source host organim | direct |
food_trace_list | 0..1 FoodTraceListEnum |
The FDA is proposing to establish additional traceability recordkeeping requi... | direct |
food_trav_mode | 0..* String |
A descriptor for the method of movement of food commodity along the food dist... | direct |
food_trav_vehic | 0..* String |
A descriptor for the mobile machine which is used to transport food commoditi... | direct |
food_treat_proc | 0..* String |
Used to specifically characterize a food product based on the treatment or pr... | direct |
HACCP_term | 0..* String |
Hazard Analysis Critical Control Points (HACCP) food safety terms; This field... | direct |
library_prep_kit | 0..1 String |
Packaged kits (containing adapters, indexes, enzymes, buffers etc | direct |
lot_number | 0..* String |
A distinctive alpha-numeric identification code assigned by the manufacturer ... | direct |
microb_cult_med | 0..1 String |
A culture medium used to select for, grow, and maintain prokaryotic microorga... | direct |
part_plant_animal | 0..* String |
The anatomical part of the organism being involved in food production or cons... | direct |
repository_name | 0..* String |
The name of the institution where the sample or DNA extract is held or "sampl... | direct |
samp_collect_method | 0..1 String |
The method employed for collecting the sample | direct |
samp_pooling | 0..* String |
Physical combination of several instances of like material, e | direct |
samp_rep_biol | 0..1 QuantityValue |
Measurements of biologically distinct samples that show biological variation | direct |
samp_rep_tech | 0..1 QuantityValue |
Repeated measurements of the same sample that show independent measures of th... | direct |
samp_source_mat_cat | 0..1 String |
This is the scientific role or category that the subject organism or material... | direct |
samp_stor_device | 0..1 String |
The container used to store the sample | direct |
samp_stor_media | 0..1 String |
The liquid that is added to the sample collection device prior to sampling | direct |
samp_transport_cont | 0..1 SampTransportContEnum |
Conatiner in which the sample was stored during transport | direct |
samp_transport_dur | 0..1 QuantityValue |
The duration of time from when the sample was collected until processed | direct |
samp_transport_temp | 0..1 String |
Temperature at which sample was transported, e | direct |
sequencing_kit | 0..1 String |
Pre-filled, ready-to-use reagent cartridges | direct |
sequencing_location | 0..1 String |
The location the sequencing run was performed | direct |
serovar_or_serotype | 0..* String |
A characterization of a cell or microorganism based on the antigenic properti... | direct |
spikein_AMR | 0..* String |
Qualitative description of a microbial response to antimicrobial agents | direct |
spikein_antibiotic | 0..* String |
Antimicrobials used in research study to assess effects of exposure on microb... | direct |
spikein_growth_med | 0..* String |
A liquid or gel containing nutrients, salts, and other factors formulated to ... | direct |
spikein_metal | 0..* String |
Heavy metals used in research study to assess effects of exposure on microbio... | direct |
spikein_org | 0..* String |
Taxonomic information about the spike-in organism(s) | direct |
spikein_serovar | 0..* String |
Taxonomic information about the spike-in organism(s) at the serovar or seroty... | direct |
spikein_strain | 0..* String |
Taxonomic information about the spike-in organism(s) at the strain level | direct |
study_design | 0..* String |
A plan specification comprised of protocols (which may specify how and what k... | direct |
study_inc_dur | 0..1 QuantityValue |
Sample incubation duration if unpublished or unvalidated method is used | direct |
study_inc_temp | 0..1 QuantityValue |
Sample incubation temperature if unpublished or unvalidated method is used | direct |
study_timecourse | 0..1 QuantityValue |
For time-course research studies involving samples of the food commodity, ind... | direct |
study_tmnt | 0..* String |
A process in which the act is intended to modify or alter some other material... | direct |
timepoint | 0..1 Double |
Time point at which a sample or observation is made or taken from a biomateri... | direct |
misc_param | 0..* String |
Any other measurement performed or parameter collected, that is not listed he... | direct |
Identifier and Mapping Information
Schema Source
- from schema: http://w3id.org/mixs
Mappings
Mapping Type | Mapped Value |
---|---|
self | MIXS:Food-animalAndAnimalFeed |
native | MIXS:Food-animalAndAnimalFeed |
LinkML Source
Direct
name: food-animal and animal feed
description: food-animal and animal feed
from_schema: http://w3id.org/mixs
slots:
- lat_lon
- depth
- alt
- elev
- temp
- geo_loc_name
- collection_date
- env_broad_scale
- env_local_scale
- env_medium
- samp_collect_device
- organism_count
- spikein_count
- samp_stor_temp
- samp_stor_dur
- pool_dna_extracts
- samp_stor_loc
- samp_transport_cont
- perturbation
- coll_site_geo_feat
- food_origin
- food_prod
- food_product_type
- food_source
- IFSAC_category
- intended_consumer
- samp_purpose
- animal_am
- animal_am_dur
- animal_am_freq
- animal_am_route
- animal_am_use
- animal_body_cond
- animal_diet
- animal_feed_equip
- animal_group_size
- animal_housing
- animal_sex
- bacterial_density
- cons_food_stor_dur
- cons_food_stor_temp
- cons_purch_date
- cons_qty_purchased
- cult_isol_date
- cult_result
- cult_result_org
- cult_target
- enrichment_protocol
- food_additive
- food_contact_surf
- food_contain_wrap
- food_cooking_proc
- food_dis_point
- food_dis_point_city
- food_ingredient
- food_pack_capacity
- food_pack_integrity
- food_pack_medium
- food_preserv_proc
- food_prior_contact
- food_prod_synonym
- food_product_qual
- food_quality_date
- food_source_age
- food_trace_list
- food_trav_mode
- food_trav_vehic
- food_treat_proc
- HACCP_term
- library_prep_kit
- lot_number
- microb_cult_med
- part_plant_animal
- repository_name
- samp_collect_method
- samp_pooling
- samp_rep_biol
- samp_rep_tech
- samp_source_mat_cat
- samp_stor_device
- samp_stor_media
- samp_transport_cont
- samp_transport_dur
- samp_transport_temp
- sequencing_kit
- sequencing_location
- serovar_or_serotype
- spikein_AMR
- spikein_antibiotic
- spikein_growth_med
- spikein_metal
- spikein_org
- spikein_serovar
- spikein_strain
- study_design
- study_inc_dur
- study_inc_temp
- study_timecourse
- study_tmnt
- timepoint
- misc_param
slot_usage:
samp_name:
name: samp_name
required: true
project_name:
name: project_name
required: true
lat_lon:
name: lat_lon
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- soil
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MIMARKS specimen
- MIMARKS survey
- MISAG
- MIMAG
- MIUVIG
- built environment
- air
- agriculture
required: true
geo_loc_name:
name: geo_loc_name
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- soil
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MIMARKS specimen
- MIMARKS survey
- MISAG
- MIMAG
- MIUVIG
- built environment
- air
- agriculture
required: true
collection_date:
name: collection_date
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- soil
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MIMARKS specimen
- MIMARKS survey
- MISAG
- MIMAG
- MIUVIG
- built environment
- air
- agriculture
required: true
env_broad_scale:
name: env_broad_scale
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- soil
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MIMARKS specimen
- MIMARKS survey
- MISAG
- MIMAG
- MIUVIG
- built environment
- air
- agriculture
required: true
env_local_scale:
name: env_local_scale
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- soil
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MIMARKS specimen
- MIMARKS survey
- MISAG
- MIMAG
- MIUVIG
- built environment
- air
- agriculture
required: true
env_medium:
name: env_medium
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- soil
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MIMARKS specimen
- MIMARKS survey
- MISAG
- MIMAG
- MIUVIG
- built environment
- air
- agriculture
required: true
seq_meth:
name: seq_meth
required: true
samp_size:
name: samp_size
required: false
samp_collect_device:
name: samp_collect_device
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- agriculture
required: false
experimental_factor:
name: experimental_factor
required: false
nucl_acid_ext:
name: nucl_acid_ext
required: false
organism_count:
name: organism_count
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- built environment
- air
- agriculture
required: false
spikein_count:
name: spikein_count
domain_of:
- food-human foods
- food-farm environment
- food-animal and animal feed
required: false
samp_stor_temp:
name: samp_stor_temp
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- agriculture
required: false
samp_stor_dur:
name: samp_stor_dur
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
required: false
samp_vol_we_dna_ext:
name: samp_vol_we_dna_ext
required: false
pool_dna_extracts:
name: pool_dna_extracts
domain_of:
- soil
- food-human foods
- food-food production facility
- food-animal and animal feed
- agriculture
required: false
temp:
name: temp
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- soil
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- core
- built environment
- air
- agriculture
required: false
samp_stor_loc:
name: samp_stor_loc
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
required: false
samp_transport_cont:
name: samp_transport_cont
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
required: false
perturbation:
name: perturbation
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-farm environment
- food-animal and animal feed
- air
- agriculture
required: false
coll_site_geo_feat:
name: coll_site_geo_feat
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
required: true
food_origin:
name: food_origin
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
required: true
food_prod:
name: food_prod
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
- agriculture
required: true
food_product_type:
name: food_product_type
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
required: true
food_source:
name: food_source
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
required: false
IFSAC_category:
name: IFSAC_category
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
required: true
intended_consumer:
name: intended_consumer
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
required: true
samp_purpose:
name: samp_purpose
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
required: true
animal_am:
name: animal_am
domain_of:
- food-animal and animal feed
required: false
animal_am_dur:
name: animal_am_dur
domain_of:
- food-animal and animal feed
required: false
animal_am_freq:
name: animal_am_freq
domain_of:
- food-animal and animal feed
required: false
animal_am_route:
name: animal_am_route
domain_of:
- food-animal and animal feed
required: false
animal_am_use:
name: animal_am_use
domain_of:
- food-animal and animal feed
required: false
animal_body_cond:
name: animal_body_cond
domain_of:
- food-animal and animal feed
required: false
animal_diet:
name: animal_diet
domain_of:
- food-farm environment
- food-animal and animal feed
required: false
animal_feed_equip:
name: animal_feed_equip
domain_of:
- food-farm environment
- food-animal and animal feed
required: false
animal_group_size:
name: animal_group_size
domain_of:
- food-farm environment
- food-animal and animal feed
required: false
animal_housing:
name: animal_housing
domain_of:
- food-farm environment
- food-animal and animal feed
required: false
animal_sex:
name: animal_sex
domain_of:
- food-animal and animal feed
required: false
bacterial_density:
name: bacterial_density
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
required: false
cons_food_stor_dur:
name: cons_food_stor_dur
domain_of:
- food-human foods
- food-animal and animal feed
required: false
cons_food_stor_temp:
name: cons_food_stor_temp
domain_of:
- food-human foods
- food-animal and animal feed
required: false
cons_purch_date:
name: cons_purch_date
domain_of:
- food-human foods
- food-animal and animal feed
required: false
cons_qty_purchased:
name: cons_qty_purchased
domain_of:
- food-human foods
- food-animal and animal feed
required: false
cult_isol_date:
name: cult_isol_date
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- agriculture
required: false
cult_result:
name: cult_result
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
required: false
cult_result_org:
name: cult_result_org
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
required: false
cult_target:
name: cult_target
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
required: false
enrichment_protocol:
name: enrichment_protocol
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- agriculture
required: false
food_additive:
name: food_additive
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
required: false
food_contact_surf:
name: food_contact_surf
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
required: false
food_contain_wrap:
name: food_contain_wrap
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
required: false
food_cooking_proc:
name: food_cooking_proc
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
required: false
food_dis_point:
name: food_dis_point
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
required: false
food_dis_point_city:
name: food_dis_point_city
domain_of:
- food-food production facility
- food-animal and animal feed
required: false
food_ingredient:
name: food_ingredient
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
required: false
food_pack_capacity:
name: food_pack_capacity
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
required: false
food_pack_integrity:
name: food_pack_integrity
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
required: false
food_pack_medium:
name: food_pack_medium
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
required: false
food_preserv_proc:
name: food_preserv_proc
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
required: false
food_prior_contact:
name: food_prior_contact
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
required: false
food_prod_synonym:
name: food_prod_synonym
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
required: false
food_product_qual:
name: food_product_qual
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
required: false
food_quality_date:
name: food_quality_date
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
required: false
food_source_age:
name: food_source_age
domain_of:
- food-animal and animal feed
required: false
food_trace_list:
name: food_trace_list
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
required: false
food_trav_mode:
name: food_trav_mode
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- agriculture
required: false
food_trav_vehic:
name: food_trav_vehic
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- agriculture
required: false
food_treat_proc:
name: food_treat_proc
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
required: false
HACCP_term:
name: HACCP_term
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
required: false
library_prep_kit:
name: library_prep_kit
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- agriculture
required: false
lot_number:
name: lot_number
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- agriculture
required: false
microb_cult_med:
name: microb_cult_med
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
required: false
part_plant_animal:
name: part_plant_animal
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
required: false
repository_name:
name: repository_name
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
required: false
samp_collect_method:
name: samp_collect_method
domain_of:
- food-food production facility
- food-animal and animal feed
- agriculture
required: false
samp_pooling:
name: samp_pooling
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- agriculture
required: false
samp_rep_biol:
name: samp_rep_biol
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
required: false
samp_rep_tech:
name: samp_rep_tech
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
required: false
samp_source_mat_cat:
name: samp_source_mat_cat
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
required: false
samp_stor_device:
name: samp_stor_device
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
required: false
samp_stor_media:
name: samp_stor_media
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
required: false
samp_transport_dur:
name: samp_transport_dur
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
required: false
samp_transport_temp:
name: samp_transport_temp
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
required: false
sequencing_kit:
name: sequencing_kit
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
required: false
sequencing_location:
name: sequencing_location
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- agriculture
required: false
serovar_or_serotype:
name: serovar_or_serotype
domain_of:
- food-human foods
- food-farm environment
- food-animal and animal feed
required: false
spikein_AMR:
name: spikein_AMR
domain_of:
- food-human foods
- food-animal and animal feed
required: false
spikein_antibiotic:
name: spikein_antibiotic
domain_of:
- food-human foods
- food-farm environment
- food-animal and animal feed
required: false
spikein_growth_med:
name: spikein_growth_med
domain_of:
- food-human foods
- food-farm environment
- food-animal and animal feed
required: false
spikein_metal:
name: spikein_metal
domain_of:
- food-human foods
- food-farm environment
- food-animal and animal feed
required: false
spikein_org:
name: spikein_org
domain_of:
- food-human foods
- food-farm environment
- food-animal and animal feed
required: false
spikein_serovar:
name: spikein_serovar
domain_of:
- food-human foods
- food-farm environment
- food-animal and animal feed
required: false
spikein_strain:
name: spikein_strain
domain_of:
- food-human foods
- food-farm environment
- food-animal and animal feed
- agriculture
required: false
study_design:
name: study_design
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
required: false
study_inc_dur:
name: study_inc_dur
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
required: false
study_inc_temp:
name: study_inc_temp
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
required: false
study_timecourse:
name: study_timecourse
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
required: false
study_tmnt:
name: study_tmnt
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
required: false
timepoint:
name: timepoint
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
required: false
misc_param:
name: misc_param
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- soil
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- air
- agriculture
required: false
Induced
name: food-animal and animal feed
description: food-animal and animal feed
from_schema: http://w3id.org/mixs
slot_usage:
samp_name:
name: samp_name
required: true
project_name:
name: project_name
required: true
lat_lon:
name: lat_lon
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- soil
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MIMARKS specimen
- MIMARKS survey
- MISAG
- MIMAG
- MIUVIG
- built environment
- air
- agriculture
required: true
geo_loc_name:
name: geo_loc_name
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- soil
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MIMARKS specimen
- MIMARKS survey
- MISAG
- MIMAG
- MIUVIG
- built environment
- air
- agriculture
required: true
collection_date:
name: collection_date
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- soil
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MIMARKS specimen
- MIMARKS survey
- MISAG
- MIMAG
- MIUVIG
- built environment
- air
- agriculture
required: true
env_broad_scale:
name: env_broad_scale
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- soil
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MIMARKS specimen
- MIMARKS survey
- MISAG
- MIMAG
- MIUVIG
- built environment
- air
- agriculture
required: true
env_local_scale:
name: env_local_scale
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- soil
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MIMARKS specimen
- MIMARKS survey
- MISAG
- MIMAG
- MIUVIG
- built environment
- air
- agriculture
required: true
env_medium:
name: env_medium
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- soil
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MIMARKS specimen
- MIMARKS survey
- MISAG
- MIMAG
- MIUVIG
- built environment
- air
- agriculture
required: true
seq_meth:
name: seq_meth
required: true
samp_size:
name: samp_size
required: false
samp_collect_device:
name: samp_collect_device
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- agriculture
required: false
experimental_factor:
name: experimental_factor
required: false
nucl_acid_ext:
name: nucl_acid_ext
required: false
organism_count:
name: organism_count
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- built environment
- air
- agriculture
required: false
spikein_count:
name: spikein_count
domain_of:
- food-human foods
- food-farm environment
- food-animal and animal feed
required: false
samp_stor_temp:
name: samp_stor_temp
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- agriculture
required: false
samp_stor_dur:
name: samp_stor_dur
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
required: false
samp_vol_we_dna_ext:
name: samp_vol_we_dna_ext
required: false
pool_dna_extracts:
name: pool_dna_extracts
domain_of:
- soil
- food-human foods
- food-food production facility
- food-animal and animal feed
- agriculture
required: false
temp:
name: temp
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- soil
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- core
- built environment
- air
- agriculture
required: false
samp_stor_loc:
name: samp_stor_loc
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
required: false
samp_transport_cont:
name: samp_transport_cont
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
required: false
perturbation:
name: perturbation
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-farm environment
- food-animal and animal feed
- air
- agriculture
required: false
coll_site_geo_feat:
name: coll_site_geo_feat
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
required: true
food_origin:
name: food_origin
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
required: true
food_prod:
name: food_prod
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
- agriculture
required: true
food_product_type:
name: food_product_type
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
required: true
food_source:
name: food_source
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
required: false
IFSAC_category:
name: IFSAC_category
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
required: true
intended_consumer:
name: intended_consumer
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
required: true
samp_purpose:
name: samp_purpose
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
required: true
animal_am:
name: animal_am
domain_of:
- food-animal and animal feed
required: false
animal_am_dur:
name: animal_am_dur
domain_of:
- food-animal and animal feed
required: false
animal_am_freq:
name: animal_am_freq
domain_of:
- food-animal and animal feed
required: false
animal_am_route:
name: animal_am_route
domain_of:
- food-animal and animal feed
required: false
animal_am_use:
name: animal_am_use
domain_of:
- food-animal and animal feed
required: false
animal_body_cond:
name: animal_body_cond
domain_of:
- food-animal and animal feed
required: false
animal_diet:
name: animal_diet
domain_of:
- food-farm environment
- food-animal and animal feed
required: false
animal_feed_equip:
name: animal_feed_equip
domain_of:
- food-farm environment
- food-animal and animal feed
required: false
animal_group_size:
name: animal_group_size
domain_of:
- food-farm environment
- food-animal and animal feed
required: false
animal_housing:
name: animal_housing
domain_of:
- food-farm environment
- food-animal and animal feed
required: false
animal_sex:
name: animal_sex
domain_of:
- food-animal and animal feed
required: false
bacterial_density:
name: bacterial_density
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
required: false
cons_food_stor_dur:
name: cons_food_stor_dur
domain_of:
- food-human foods
- food-animal and animal feed
required: false
cons_food_stor_temp:
name: cons_food_stor_temp
domain_of:
- food-human foods
- food-animal and animal feed
required: false
cons_purch_date:
name: cons_purch_date
domain_of:
- food-human foods
- food-animal and animal feed
required: false
cons_qty_purchased:
name: cons_qty_purchased
domain_of:
- food-human foods
- food-animal and animal feed
required: false
cult_isol_date:
name: cult_isol_date
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- agriculture
required: false
cult_result:
name: cult_result
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
required: false
cult_result_org:
name: cult_result_org
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
required: false
cult_target:
name: cult_target
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
required: false
enrichment_protocol:
name: enrichment_protocol
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- agriculture
required: false
food_additive:
name: food_additive
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
required: false
food_contact_surf:
name: food_contact_surf
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
required: false
food_contain_wrap:
name: food_contain_wrap
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
required: false
food_cooking_proc:
name: food_cooking_proc
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
required: false
food_dis_point:
name: food_dis_point
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
required: false
food_dis_point_city:
name: food_dis_point_city
domain_of:
- food-food production facility
- food-animal and animal feed
required: false
food_ingredient:
name: food_ingredient
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
required: false
food_pack_capacity:
name: food_pack_capacity
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
required: false
food_pack_integrity:
name: food_pack_integrity
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
required: false
food_pack_medium:
name: food_pack_medium
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
required: false
food_preserv_proc:
name: food_preserv_proc
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
required: false
food_prior_contact:
name: food_prior_contact
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
required: false
food_prod_synonym:
name: food_prod_synonym
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
required: false
food_product_qual:
name: food_product_qual
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
required: false
food_quality_date:
name: food_quality_date
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
required: false
food_source_age:
name: food_source_age
domain_of:
- food-animal and animal feed
required: false
food_trace_list:
name: food_trace_list
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
required: false
food_trav_mode:
name: food_trav_mode
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- agriculture
required: false
food_trav_vehic:
name: food_trav_vehic
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- agriculture
required: false
food_treat_proc:
name: food_treat_proc
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
required: false
HACCP_term:
name: HACCP_term
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
required: false
library_prep_kit:
name: library_prep_kit
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- agriculture
required: false
lot_number:
name: lot_number
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- agriculture
required: false
microb_cult_med:
name: microb_cult_med
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
required: false
part_plant_animal:
name: part_plant_animal
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
required: false
repository_name:
name: repository_name
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
required: false
samp_collect_method:
name: samp_collect_method
domain_of:
- food-food production facility
- food-animal and animal feed
- agriculture
required: false
samp_pooling:
name: samp_pooling
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- agriculture
required: false
samp_rep_biol:
name: samp_rep_biol
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
required: false
samp_rep_tech:
name: samp_rep_tech
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
required: false
samp_source_mat_cat:
name: samp_source_mat_cat
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
required: false
samp_stor_device:
name: samp_stor_device
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
required: false
samp_stor_media:
name: samp_stor_media
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
required: false
samp_transport_dur:
name: samp_transport_dur
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
required: false
samp_transport_temp:
name: samp_transport_temp
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
required: false
sequencing_kit:
name: sequencing_kit
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
required: false
sequencing_location:
name: sequencing_location
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- agriculture
required: false
serovar_or_serotype:
name: serovar_or_serotype
domain_of:
- food-human foods
- food-farm environment
- food-animal and animal feed
required: false
spikein_AMR:
name: spikein_AMR
domain_of:
- food-human foods
- food-animal and animal feed
required: false
spikein_antibiotic:
name: spikein_antibiotic
domain_of:
- food-human foods
- food-farm environment
- food-animal and animal feed
required: false
spikein_growth_med:
name: spikein_growth_med
domain_of:
- food-human foods
- food-farm environment
- food-animal and animal feed
required: false
spikein_metal:
name: spikein_metal
domain_of:
- food-human foods
- food-farm environment
- food-animal and animal feed
required: false
spikein_org:
name: spikein_org
domain_of:
- food-human foods
- food-farm environment
- food-animal and animal feed
required: false
spikein_serovar:
name: spikein_serovar
domain_of:
- food-human foods
- food-farm environment
- food-animal and animal feed
required: false
spikein_strain:
name: spikein_strain
domain_of:
- food-human foods
- food-farm environment
- food-animal and animal feed
- agriculture
required: false
study_design:
name: study_design
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
required: false
study_inc_dur:
name: study_inc_dur
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
required: false
study_inc_temp:
name: study_inc_temp
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
required: false
study_timecourse:
name: study_timecourse
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
required: false
study_tmnt:
name: study_tmnt
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
required: false
timepoint:
name: timepoint
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
required: false
misc_param:
name: misc_param
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- soil
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- air
- agriculture
required: false
attributes:
lat_lon:
name: lat_lon
description: The geographical origin of the sample as defined by latitude and
longitude. The values should be reported in decimal degrees and in WGS84 system
title: geographic location (latitude and longitude)
from_schema: http://w3id.org/mixs
is_a: environment field
string_serialization: '{float} {float}'
slot_uri: MIXS:0000009
multivalued: false
alias: lat_lon
owner: food-animal and animal feed
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- soil
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MIMARKS specimen
- MIMARKS survey
- MISAG
- MIMAG
- MIUVIG
- built environment
- air
- agriculture
range: string
required: true
depth:
name: depth
annotations:
expected_value:
tag: expected_value
value: measurement value
description: The vertical distance below local surface, e.g. for sediment or soil
samples depth is measured from sediment or soil surface, respectively. Depth
can be reported as an interval for subsurface samples.
title: depth
examples:
- value: 10 meter
from_schema: http://w3id.org/mixs
aliases:
- depth
is_a: environment field
slot_uri: MIXS:0000018
multivalued: false
alias: depth
owner: food-animal and animal feed
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- soil
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- core
- built environment
- air
- agriculture
range: quantity value
alt:
name: alt
annotations:
expected_value:
tag: expected_value
value: measurement value
description: Altitude is a term used to identify heights of objects such as airplanes,
space shuttles, rockets, atmospheric balloons and heights of places such as
atmospheric layers and clouds. It is used to measure the height of an object
which is above the earth's surface. In this context, the altitude measurement
is the vertical distance between the earth's surface above sea level and the
sampled position in the air
title: altitude
examples:
- value: 100 meter
from_schema: http://w3id.org/mixs
aliases:
- altitude
is_a: environment field
slot_uri: MIXS:0000094
multivalued: false
alias: alt
owner: food-animal and animal feed
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- soil
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- core
- built environment
- air
- agriculture
range: quantity value
elev:
name: elev
annotations:
expected_value:
tag: expected_value
value: measurement value
description: Elevation of the sampling site is its height above a fixed reference
point, most commonly the mean sea level. Elevation is mainly used when referring
to points on the earth's surface, while altitude is used for points above the
surface, such as an aircraft in flight or a spacecraft in orbit.
title: elevation
examples:
- value: 100 meter
from_schema: http://w3id.org/mixs
aliases:
- elevation
is_a: environment field
slot_uri: MIXS:0000093
multivalued: false
alias: elev
owner: food-animal and animal feed
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- soil
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- core
- built environment
- air
- agriculture
range: quantity value
temp:
name: temp
description: Temperature of the sample at the time of sampling.
title: temperature
from_schema: http://w3id.org/mixs
is_a: environment field
slot_uri: MIXS:0000113
multivalued: false
alias: temp
owner: food-animal and animal feed
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- soil
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- core
- built environment
- air
- agriculture
range: quantity value
required: false
geo_loc_name:
name: geo_loc_name
description: The geographical origin of the sample as defined by the country or
sea name followed by specific region name. Country or sea names should be chosen
from the INSDC country list (http://insdc.org/country.html), or the GAZ ontology
(http://purl.bioontology.org/ontology/GAZ)
title: geographic location (country and/or sea,region)
from_schema: http://w3id.org/mixs
is_a: environment field
string_serialization: '{term}: {term}, {text}'
slot_uri: MIXS:0000010
multivalued: false
alias: geo_loc_name
owner: food-animal and animal feed
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- soil
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MIMARKS specimen
- MIMARKS survey
- MISAG
- MIMAG
- MIUVIG
- built environment
- air
- agriculture
range: string
required: true
collection_date:
name: collection_date
description: 'The time of sampling, either as an instance (single point in time)
or interval. In case no exact time is available, the date/time can be right
truncated i.e. all of these are valid times: 2008-01-23T19:23:10+00:00; 2008-01-23T19:23:10;
2008-01-23; 2008-01; 2008; Except: 2008-01; 2008 all are ISO8601 compliant'
title: collection date
from_schema: http://w3id.org/mixs
is_a: environment field
slot_uri: MIXS:0000011
multivalued: false
alias: collection_date
owner: food-animal and animal feed
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- soil
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MIMARKS specimen
- MIMARKS survey
- MISAG
- MIMAG
- MIUVIG
- built environment
- air
- agriculture
range: date
required: true
env_broad_scale:
name: env_broad_scale
description: 'Report the major environmental system the sample or specimen came
from. The system(s) identified should have a coarse spatial grain, to provide
the general environmental context of where the sampling was done (e.g. in the
desert or a rainforest). We recommend using subclasses of EnvO’s biome class: http://purl.obolibrary.org/obo/ENVO_00000428.
EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS'
title: broad-scale environmental context
from_schema: http://w3id.org/mixs
is_a: environment field
string_serialization: '{termLabel} {[termID]}'
slot_uri: MIXS:0000012
multivalued: false
alias: env_broad_scale
owner: food-animal and animal feed
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- soil
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MIMARKS specimen
- MIMARKS survey
- MISAG
- MIMAG
- MIUVIG
- built environment
- air
- agriculture
range: string
required: true
env_local_scale:
name: env_local_scale
description: 'Report the entity or entities which are in the sample or specimen’s
local vicinity and which you believe have significant causal influences on your
sample or specimen. We recommend using EnvO terms which are of smaller spatial
grain than your entry for env_broad_scale. Terms, such as anatomical sites,
from other OBO Library ontologies which interoperate with EnvO (e.g. UBERON)
are accepted in this field. EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS.'
title: local environmental context
from_schema: http://w3id.org/mixs
is_a: environment field
string_serialization: '{termLabel} {[termID]}'
slot_uri: MIXS:0000013
multivalued: false
alias: env_local_scale
owner: food-animal and animal feed
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- soil
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MIMARKS specimen
- MIMARKS survey
- MISAG
- MIMAG
- MIUVIG
- built environment
- air
- agriculture
range: string
required: true
env_medium:
name: env_medium
description: 'Report the environmental material(s) immediately surrounding the
sample or specimen at the time of sampling. We recommend using subclasses of
''environmental material'' (http://purl.obolibrary.org/obo/ENVO_00010483). EnvO
documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS
. Terms from other OBO ontologies are permissible as long as they reference
mass/volume nouns (e.g. air, water, blood) and not discrete, countable entities
(e.g. a tree, a leaf, a table top).'
title: environmental medium
from_schema: http://w3id.org/mixs
is_a: environment field
string_serialization: '{termLabel} {[termID]}'
slot_uri: MIXS:0000014
multivalued: false
alias: env_medium
owner: food-animal and animal feed
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- soil
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MIMARKS specimen
- MIMARKS survey
- MISAG
- MIMAG
- MIUVIG
- built environment
- air
- agriculture
range: string
required: true
samp_collect_device:
name: samp_collect_device
description: The device used to collect an environmental sample. This field accepts
terms listed under environmental sampling device (http://purl.obolibrary.org/obo/ENVO).
This field also accepts terms listed under specimen collection device (http://purl.obolibrary.org/obo/GENEPIO_0002094).
title: sample collection device
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{termLabel} {[termID]}|{text}'
slot_uri: MIXS:0000002
multivalued: false
alias: samp_collect_device
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- agriculture
range: string
required: false
organism_count:
name: organism_count
description: 'Total cell count of any organism (or group of organisms) per gram,
volume or area of sample, should include name of organism followed by count.
The method that was used for the enumeration (e.g. qPCR, atp, mpn, etc.) Should
also be provided. (example: total prokaryotes; 3.5e7 cells per ml; qpcr)'
title: organism count
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000103
multivalued: true
alias: organism_count
owner: food-animal and animal feed
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- built environment
- air
- agriculture
range: organism_count_enum
required: false
spikein_count:
name: spikein_count
description: 'Total cell count of any organism (or group of organisms) per gram,
volume or area of sample, should include name of organism followed by count.
The method that was used for the enumeration (e.g. qPCR, atp, mpn, etc.) should
also be provided (example: total prokaryotes; 3.5e7 cells per ml; qPCR).'
title: spike-in organism count
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0001335
multivalued: false
alias: spikein_count
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-farm environment
- food-animal and animal feed
range: spikein_count_enum
required: false
samp_stor_temp:
name: samp_stor_temp
description: Temperature at which sample was stored, e.g. -80 degree Celsius.
title: sample storage temperature
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000110
multivalued: false
alias: samp_stor_temp
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- agriculture
range: quantity value
required: false
samp_stor_dur:
name: samp_stor_dur
description: Duration for which the sample was stored. Indicate the duration for
which the sample was stored written in ISO 8601 format.
title: sample storage duration
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{duration}'
slot_uri: MIXS:0000116
multivalued: false
alias: samp_stor_dur
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
range: string
required: false
pool_dna_extracts:
name: pool_dna_extracts
description: Indicate whether multiple DNA extractions were mixed. If the answer
yes, the number of extracts that were pooled should be given
title: pooling of DNA extracts (if done)
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{boolean};{integer}'
slot_uri: MIXS:0000325
multivalued: false
alias: pool_dna_extracts
owner: food-animal and animal feed
domain_of:
- soil
- food-human foods
- food-food production facility
- food-animal and animal feed
- agriculture
range: string
required: false
samp_stor_loc:
name: samp_stor_loc
description: Location at which sample was stored, usually name of a specific freezer/room.
Indicate the location name.
title: sample storage location
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text}'
slot_uri: MIXS:0000755
multivalued: false
alias: samp_stor_loc
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
range: string
required: false
samp_transport_cont:
name: samp_transport_cont
description: Conatiner in which the sample was stored during transport. Indicate
the location name.
title: sample transport container
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0001230
multivalued: false
alias: samp_transport_cont
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
range: samp_transport_cont_enum
required: false
perturbation:
name: perturbation
description: Type of perturbation, e.g. chemical administration, physical disturbance,
etc., coupled with perturbation regimen including how many times the perturbation
was repeated, how long each perturbation lasted, and the start and end time
of the entire perturbation period; can include multiple perturbation types
title: perturbation
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text};{Rn/start_time/end_time/duration}'
slot_uri: MIXS:0000754
multivalued: true
alias: perturbation
owner: food-animal and animal feed
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-farm environment
- food-animal and animal feed
- air
- agriculture
range: string
required: false
coll_site_geo_feat:
name: coll_site_geo_feat
description: 'Text or terms that describe the geographic feature where the food
sample was obtained by the researcher. This field accepts selected terms listed
under the following ontologies: anthropogenic geographic feature (http://purl.obolibrary.org/obo/ENVO_00000002),
for example agricultural fairground [ENVO:01000986]; garden [ENVO:00000011}
or any of its subclasses; market [ENVO:01000987]; water well [ENVO:01000002];
or human construction (http://purl.obolibrary.org/obo/ENVO_00000070).'
title: collection site geographic feature
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text}|{termLabel} {[termID]}'
slot_uri: MIXS:0001183
multivalued: false
alias: coll_site_geo_feat
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
range: string
required: true
food_origin:
name: food_origin
description: A reference to a place on the Earth, by its name or by its geographical
location that describes the origin of the food commodity, either in terms of
its cultivation or production. This field accepts terms listed under geographic
location (http://purl.obolibrary.org/obo/GAZ_00000448).
title: food product origin geographic location
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{term}: {term}, {text}'
slot_uri: MIXS:0001207
multivalued: false
alias: food_origin
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
range: string
required: true
food_prod:
name: food_prod
description: Descriptors of the food production system or of the agricultural
environment and growing conditions related to the farm production system, such
as wild caught, organic, free-range, industrial, dairy, beef, domestic or cultivated
food production. This field accepts terms listed under food production (http://purl.obolibrary.org/obo/FOODON_03530206).
Multiple terms may apply and can be separated by pipes.
title: food production system characteristics
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{termLabel} {[termID]}'
slot_uri: MIXS:0001211
multivalued: true
alias: food_prod
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
- agriculture
range: string
required: true
food_product_type:
name: food_product_type
description: A food product type is a class of food products that is differentiated
by its food composition (e.g., single- or multi-ingredient), processing and/or
consumption characteristics. This does not include brand name products but it
may include generic food dish categories. This field accepts terms under food
product type (http://purl.obolibrary.org/obo/FOODON:03400361). For terms related
to food product for an animal, consult food product for animal (http://purl.obolibrary.org/obo/FOODON_03309997).
If the proper descriptor is not listed please use text to describe the food
type. Multiple terms can be separated by one or more pipes.
title: food product type
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text}|{termLabel} {[termID]}'
slot_uri: MIXS:0001184
multivalued: true
alias: food_product_type
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
range: string
required: true
food_source:
name: food_source
description: Type of plant or animal from which the food product or its major
ingredient is derived or a chemical food source [FDA CFSAN 1995].
title: food source
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{termLabel} {[termID]}'
slot_uri: MIXS:0001139
multivalued: false
alias: food_source
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
range: string
required: false
IFSAC_category:
name: IFSAC_category
description: 'The IFSAC food categorization scheme has five distinct levels to
which foods can be assigned, depending upon the type of food. First, foods are
assigned to one of four food groups (aquatic animals, land animals, plants,
and other). Food groups include increasingly specific food categories; dairy,
eggs, meat and poultry, and game are in the land animal food group, and the
category meat and poultry is further subdivided into more specific categories
of meat (beef, pork, other meat) and poultry (chicken, turkey, other poultry).
Finally, foods are differentiated by differences in food processing (such as
pasteurized fluid dairy products, unpasteurized fluid dairy products, pasteurized
solid and semi-solid dairy products, and unpasteurized solid and semi-solid
dairy products. An IFSAC food category chart is available from https://www.cdc.gov/foodsafety/ifsac/projects/food-categorization-scheme.html
PMID: 28926300.'
title: Interagency Food Safety Analytics Collaboration (IFSAC) category
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text}'
slot_uri: MIXS:0001179
multivalued: true
alias: IFSAC_category
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
range: string
required: true
intended_consumer:
name: intended_consumer
description: Food consumer type, human or animal, for which the food product is
produced and marketed. This field accepts terms listed under food consumer group
(http://purl.obolibrary.org/obo/FOODON_03510136) or NCBI taxid.
title: intended consumer
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{integer}|{termLabel} {[termID]}'
slot_uri: MIXS:0001144
multivalued: true
alias: intended_consumer
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
range: string
required: true
samp_purpose:
name: samp_purpose
description: The reason that the sample was collected.
title: purpose of sampling
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0001151
multivalued: false
alias: samp_purpose
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
range: string
required: true
animal_am:
name: animal_am
description: The name(s) (generic or brand) of the antimicrobial(s) given to the
food animal within the last 30 days.
title: food animal antimicrobial
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text}'
slot_uri: MIXS:0001243
multivalued: false
alias: animal_am
owner: food-animal and animal feed
domain_of:
- food-animal and animal feed
range: string
required: false
animal_am_dur:
name: animal_am_dur
description: The duration of time (days) that the antimicrobial was administered
to the food animal.
title: food animal antimicrobial duration
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{float} {day}'
slot_uri: MIXS:0001244
multivalued: false
alias: animal_am_dur
owner: food-animal and animal feed
domain_of:
- food-animal and animal feed
range: string
required: false
animal_am_freq:
name: animal_am_freq
description: The frequency per day that the antimicrobial was adminstered to the
food animal.
title: food animal antimicrobial frequency
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0001245
multivalued: false
alias: animal_am_freq
owner: food-animal and animal feed
domain_of:
- food-animal and animal feed
range: quantity value
required: false
animal_am_route:
name: animal_am_route
description: The route by which the antimicrobial is adminstered into the body
of the food animal.
title: food animal antimicrobial route of administration
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text}'
slot_uri: MIXS:0001246
multivalued: false
alias: animal_am_route
owner: food-animal and animal feed
domain_of:
- food-animal and animal feed
range: string
required: false
animal_am_use:
name: animal_am_use
description: The prescribed intended use of or the condition treated by the antimicrobial
given to the food animal by any route of administration.
title: food animal antimicrobial intended use
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text}'
slot_uri: MIXS:0001247
multivalued: false
alias: animal_am_use
owner: food-animal and animal feed
domain_of:
- food-animal and animal feed
range: string
required: false
animal_body_cond:
name: animal_body_cond
description: Body condition scoring is a production management tool used to evaluate
overall health and nutritional needs of a food animal. Because there are different
scoring systems, this field is restricted to three categories.
title: food animal body condition
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0001248
multivalued: false
alias: animal_body_cond
owner: food-animal and animal feed
domain_of:
- food-animal and animal feed
range: animal_body_cond_enum
required: false
animal_diet:
name: animal_diet
description: If the isolate is from a food animal, the type of diet eaten by the
food animal. Please list the main food staple and the setting, if appropriate. For
a list of acceptable animal feed terms or categories, please see http://www.feedipedia.org. Multiple
terms may apply and can be separated by pipes |Food product for animal covers
foods intended for consumption by domesticated animals. Consult http://purl.obolibrary.org/obo/FOODON_03309997.
If the proper descriptor is not listed please use text to describe the food
type. Multiple terms can be separated by one or more pipes. If the proper descriptor
is not listed please use text to describe the food product type.
title: food animal source diet
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text}'
slot_uri: MIXS:0001130
multivalued: true
alias: animal_diet
owner: food-animal and animal feed
domain_of:
- food-farm environment
- food-animal and animal feed
range: string
required: false
animal_feed_equip:
name: animal_feed_equip
description: Description of the feeding equipment used for livestock. This field
accepts terms listed under feed delivery (http://opendata.inra.fr/EOL/EOL_0001757).
Multiple terms can be separated by one or more pipes.
title: animal feeding equipment
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{termLabel} {[termID]}'
slot_uri: MIXS:0001113
multivalued: true
alias: animal_feed_equip
owner: food-animal and animal feed
domain_of:
- food-farm environment
- food-animal and animal feed
range: string
required: false
animal_group_size:
name: animal_group_size
description: The number of food animals of the same species that are maintained
together as a unit, i.e. a herd or flock.
title: food animal group size
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0001129
multivalued: false
alias: animal_group_size
owner: food-animal and animal feed
domain_of:
- food-farm environment
- food-animal and animal feed
range: integer
required: false
animal_housing:
name: animal_housing
description: Description of the housing system of the livestock. This field accepts
terms listed under terrestrial management housing system (http://opendata.inra.fr/EOL/EOL_0001605).
title: animal housing system
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{termLabel} {[termID]}'
slot_uri: MIXS:0001180
multivalued: true
alias: animal_housing
owner: food-animal and animal feed
domain_of:
- food-farm environment
- food-animal and animal feed
range: string
required: false
animal_sex:
name: animal_sex
description: The sex and reproductive status of the food animal.
title: food animal source sex category
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0001249
multivalued: false
alias: animal_sex
owner: food-animal and animal feed
domain_of:
- food-animal and animal feed
range: animal_sex_enum
required: false
bacterial_density:
name: bacterial_density
description: Number of bacteria in sample, as defined by bacteria density (http://purl.obolibrary.org/obo/GENEPIO_0000043).
title: bacteria density
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0001194
multivalued: false
alias: bacterial_density
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
range: quantity value
required: false
cons_food_stor_dur:
name: cons_food_stor_dur
description: The storage duration of the food commodity by the consumer, prior
to onset of illness or sample collection. Indicate the timepoint written in
ISO 8601 format.
title: food stored by consumer (storage duration)
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{duration}'
slot_uri: MIXS:0001195
multivalued: false
alias: cons_food_stor_dur
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-animal and animal feed
range: string
required: false
cons_food_stor_temp:
name: cons_food_stor_temp
description: Temperature at which food commodity was stored by the consumer, prior
to onset of illness or sample collection.
title: food stored by consumer (storage temperature)
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{float} {unit}|{text}'
slot_uri: MIXS:0001196
multivalued: false
alias: cons_food_stor_temp
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-animal and animal feed
range: string
required: false
cons_purch_date:
name: cons_purch_date
description: The date a food product was purchased by consumer.
title: purchase date
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0001197
multivalued: false
alias: cons_purch_date
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-animal and animal feed
range: date
required: false
cons_qty_purchased:
name: cons_qty_purchased
description: The quantity of food purchased by consumer.
title: quantity purchased
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{integer} {unit}'
slot_uri: MIXS:0001198
multivalued: false
alias: cons_qty_purchased
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-animal and animal feed
range: string
required: false
cult_isol_date:
name: cult_isol_date
description: A culture isolation date is a date-time entity marking the end of
a process in which a sample yields a positive result for the target microbial
analyte(s) in the form of an isolated colony or colonies.
title: culture isolation date
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0001181
multivalued: false
alias: cult_isol_date
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- agriculture
range: date
required: false
cult_result:
name: cult_result
description: Any result of a bacterial culture experiment reported as a binary
assessment such as positive/negative, active/inactive.
title: culture result
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0001117
multivalued: false
alias: cult_result
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
range: cult_result_enum
required: false
cult_result_org:
name: cult_result_org
description: Taxonomic information about the cultured organism(s).
title: culture result organism
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{termLabel} {[termID]}|{integer}'
slot_uri: MIXS:0001118
multivalued: true
alias: cult_result_org
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
range: string
required: false
cult_target:
name: cult_target
description: The target microbial analyte in terms of investigation scope. This
field accepts terms under organism (http://purl.obolibrary.org/obo/NCIT_C14250).
This field also accepts identification numbers from NCBI under https://www.ncbi.nlm.nih.gov/taxonomy.
title: culture target microbial analyte
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{termLabel} {[termID]}|{integer}'
slot_uri: MIXS:0001119
multivalued: true
alias: cult_target
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
range: string
required: false
enrichment_protocol:
name: enrichment_protocol
description: The microbiological workflow or protocol followed to test for the
presence or enumeration of the target microbial analyte(s). Please provide a
PubMed or DOI reference for published protocols.
title: enrichment protocol
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{PMID}|{DOI}|{URL}|{text}'
slot_uri: MIXS:0001177
multivalued: false
alias: enrichment_protocol
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- agriculture
range: string
required: false
food_additive:
name: food_additive
description: A substance or substances added to food to maintain or improve safety
and freshness, to improve or maintain nutritional value, or improve taste, texture
and appearance. This field accepts terms listed under food additive (http://purl.obolibrary.org/obo/FOODON_03412972).
Multiple terms can be separated by one or more pipes, but please consider limiting
this list to the top 5 ingredients listed in order as on the food label. See
also, https://www.fda.gov/food/food-ingredients-packaging/overview-food-ingredients-additives-colors.
title: food additive
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text}|{termLabel} {[termID]}'
slot_uri: MIXS:0001200
multivalued: true
alias: food_additive
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
range: string
required: false
food_contact_surf:
name: food_contact_surf
description: The specific container or coating materials in direct contact with
the food. Multiple values can be assigned. This field accepts terms listed
under food contact surface (http://purl.obolibrary.org/obo/FOODON_03500010).
title: food contact surface
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text}|{termLabel} {[termID]}'
slot_uri: MIXS:0001131
multivalued: true
alias: food_contact_surf
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
range: string
required: false
food_contain_wrap:
name: food_contain_wrap
description: Type of container or wrapping defined by the main container material,
the container form, and the material of the liner lids or ends. Also type of
container or wrapping by form; prefer description by material first, then by
form. This field accepts terms listed under food container or wrapping (http://purl.obolibrary.org/obo/FOODON_03490100).
title: food container or wrapping
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text}|{termLabel} {[termID]}'
slot_uri: MIXS:0001132
multivalued: false
alias: food_contain_wrap
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
range: string
required: false
food_cooking_proc:
name: food_cooking_proc
description: The transformation of raw food by the application of heat. This field
accepts terms listed under food cooking (http://purl.obolibrary.org/obo/FOODON_03450002).
title: food cooking process
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text}|{termLabel} {[termID]}'
slot_uri: MIXS:0001202
multivalued: true
alias: food_cooking_proc
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
range: string
required: false
food_dis_point:
name: food_dis_point
description: 'A reference to a place on the Earth, by its name or by its geographical
location that refers to a distribution point along the food chain. This field
accepts terms listed under geographic location (http://purl.obolibrary.org/obo/GAZ_00000448).
Reference: Adam Diamond, James Barham. Moving Food Along the Value Chain: Innovations
in Regional Food Distribution. U.S. Dept. of Agriculture, Agricultural Marketing
Service. Washington, DC. March 2012. http://dx.doi.org/10.9752/MS045.03-2012.'
title: food distribution point geographic location
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{term}: {term}, {text}'
slot_uri: MIXS:0001203
multivalued: true
alias: food_dis_point
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
range: string
required: false
food_dis_point_city:
name: food_dis_point_city
description: 'A reference to a place on the Earth, by its name or by its geographical
location that refers to a distribution point along the food chain. This field
accepts terms listed under geographic location (http://purl.obolibrary.org/obo/GAZ_00000448).
Reference: Adam Diamond, James Barham. Moving Food Along the Value Chain: Innovations
in Regional Food Distribution. U.S. Dept. of Agriculture, Agricultural Marketing
Service. Washington, DC. March 2012. http://dx.doi.org/10.9752/MS045.03-2012.'
title: food distribution point geographic location (city)
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text}|{termLabel} {[termID]}'
slot_uri: MIXS:0001204
multivalued: false
alias: food_dis_point_city
owner: food-animal and animal feed
domain_of:
- food-food production facility
- food-animal and animal feed
range: string
required: false
food_ingredient:
name: food_ingredient
description: In this field, please list individual ingredients for multi-component
food [FOODON:00002501] and simple foods that is not captured in food_type. Please
use terms that are present in FoodOn. Multiple terms can be separated by one
or more pipes |, but please consider limiting this list to the top 5 ingredients
listed in order as on the food label. See also, https://www.fda.gov/food/food-ingredients-packaging/overview-food-ingredients-additives-colors.
title: food ingredient
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text}|{termLabel} {[termID]}'
slot_uri: MIXS:0001205
multivalued: true
alias: food_ingredient
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
range: string
required: false
food_pack_capacity:
name: food_pack_capacity
description: The maximum number of product units within a package
title: food package capacity
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0001208
multivalued: false
alias: food_pack_capacity
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
range: quantity value
required: false
food_pack_integrity:
name: food_pack_integrity
description: A term label and term id to describe the state of the packing material
and text to explain the exact condition. This field accepts terms listed under
food packing medium integrity (http://purl.obolibrary.org/obo/FOODON_03530218).
title: food packing medium integrity
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text}|{termLabel} {[termID]}'
slot_uri: MIXS:0001209
multivalued: true
alias: food_pack_integrity
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
range: string
required: false
food_pack_medium:
name: food_pack_medium
description: The medium in which the food is packed for preservation and handling
or the medium surrounding homemade foods, e.g., peaches cooked in sugar syrup.
The packing medium may provide a controlled environment for the food. It may
also serve to improve palatability and consumer appeal. This includes edible
packing media (e.g. fruit juice), gas other than air (e.g. carbon dioxide),
vacuum packed, or packed with aerosol propellant. This field accepts terms under
food packing medium (http://purl.obolibrary.org/obo/FOODON_03480020). Multiple
terms may apply and can be separated by pipes.
title: food packing medium
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text}|{termLabel} {[termID]}'
slot_uri: MIXS:0001134
multivalued: true
alias: food_pack_medium
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
range: string
required: false
food_preserv_proc:
name: food_preserv_proc
description: The methods contributing to the prevention or retardation of microbial,
enzymatic or oxidative spoilage and thus to the extension of shelf life. This
field accepts terms listed under food preservation process (http://purl.obolibrary.org/obo/FOODON_03470107).
title: food preservation process
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text}|{termLabel} {[termID]}'
slot_uri: MIXS:0001135
multivalued: true
alias: food_preserv_proc
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
range: string
required: false
food_prior_contact:
name: food_prior_contact
description: The material the food contacted (e.g., was processed in) prior to
packaging. This field accepts terms listed under material of contact prior to
food packaging (http://purl.obolibrary.org/obo/FOODON_03530077). If the proper
descriptor is not listed please use text to describe the material of contact
prior to food packaging.
title: material of contact prior to food packaging
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text}|{termLabel} {[termID]}'
slot_uri: MIXS:0001210
multivalued: true
alias: food_prior_contact
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
range: string
required: false
food_prod_synonym:
name: food_prod_synonym
description: Other names by which the food product is known by (e.g., regional
or non-English names).
title: food product synonym
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text}'
slot_uri: MIXS:0001212
multivalued: true
alias: food_prod_synonym
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
range: string
required: false
food_product_qual:
name: food_product_qual
description: Descriptors for describing food visually or via other senses, which
is useful for tasks like food inspection where little prior knowledge of how
the food came to be is available. Some terms like "food (frozen)" are both a
quality descriptor and the output of a process. This field accepts terms listed
under food product by quality (http://purl.obolibrary.org/obo/FOODON_00002454).
title: food product by quality
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{termLabel} {[termID]}'
slot_uri: MIXS:0001213
multivalued: false
alias: food_product_qual
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
range: string
required: false
food_quality_date:
name: food_quality_date
description: The date recommended for the use of the product while at peak quality,
this date is not a reflection of safety unless used on infant formula this date
is not a reflection of safety and is typically labeled on a food product as
"best if used by," best by," "use by," or "freeze by."
title: food quality date
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0001178
multivalued: false
alias: food_quality_date
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
range: string
required: false
pattern: ^(best by|best if used by|freeze by||use by);(19|20)\d\d-(0[1-9]|1[012])-(0[1-9]|[12][0-9]|3[01])$
food_source_age:
name: food_source_age
description: The age of the food source host organim. Depending on the type of
host organism, age may be more appropriate to report in days, weeks, or years.
title: food source age
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0001251
multivalued: false
alias: food_source_age
owner: food-animal and animal feed
domain_of:
- food-animal and animal feed
range: quantity value
required: false
food_trace_list:
name: food_trace_list
description: The FDA is proposing to establish additional traceability recordkeeping
requirements (beyond what is already required in existing regulations) for persons
who manufacture, process, pack, or hold foods the Agency has designated for
inclusion on the Food Traceability List. The Food Traceability List (FTL) identifies
the foods for which the additional traceability records described in the proposed
rule would be required. The term “Food Traceability List” (FTL) refers not only
to the foods specifically listed (https://www.fda.gov/media/142303/download),
but also to any foods that contain listed foods as ingredients.
title: food traceability list category
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0001214
multivalued: false
alias: food_trace_list
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
range: food_trace_list_enum
required: false
food_trav_mode:
name: food_trav_mode
description: A descriptor for the method of movement of food commodity along the
food distribution system. This field accepts terms listed under travel mode
(http://purl.obolibrary.org/obo/GENEPIO_0001064). If the proper descrptor is
not listed please use text to describe the mode of travel. Multiple terms can
be separated by one or more pipes.
title: food shipping transportation method
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{termLabel} {[termID]}'
slot_uri: MIXS:0001137
multivalued: true
alias: food_trav_mode
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- agriculture
range: string
required: false
food_trav_vehic:
name: food_trav_vehic
description: A descriptor for the mobile machine which is used to transport food
commodities along the food distribution system. This field accepts terms listed
under vehicle (http://purl.obolibrary.org/obo/ENVO_01000604). If the proper
descrptor is not listed please use text to describe the mode of travel. Multiple
terms can be separated by one or more pipes.
title: Food shipping transportation vehicle
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text}|{termLabel} {[termID]}'
slot_uri: MIXS:0001138
multivalued: true
alias: food_trav_vehic
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- agriculture
range: string
required: false
food_treat_proc:
name: food_treat_proc
description: Used to specifically characterize a food product based on the treatment
or processes applied to the product or any indexed ingredient. The processes
include adding, substituting or removing components or modifying the food or
component, e.g., through fermentation. Multiple values can be assigned. This
fields accepts terms listed under food treatment process (http://purl.obolibrary.org/obo/FOODON_03460111).
title: food treatment process
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text}|{termLabel} {[termID]}'
slot_uri: MIXS:0001140
multivalued: true
alias: food_treat_proc
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
range: string
required: false
HACCP_term:
name: HACCP_term
description: Hazard Analysis Critical Control Points (HACCP) food safety terms;
This field accepts terms listed under HACCP guide food safety term (http://purl.obolibrary.org/obo/FOODON_03530221).
title: Hazard Analysis Critical Control Points (HACCP) guide food safety term
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{termLabel} {[termID]}'
slot_uri: MIXS:0001215
multivalued: true
alias: HACCP_term
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
range: string
required: false
library_prep_kit:
name: library_prep_kit
description: Packaged kits (containing adapters, indexes, enzymes, buffers etc.),
tailored for specific sequencing workflows, which allow the simplified preparation
of sequencing-ready libraries for small genomes, amplicons, and plasmids.
title: library preparation kit
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text}'
slot_uri: MIXS:0001145
multivalued: false
alias: library_prep_kit
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- agriculture
range: string
required: false
lot_number:
name: lot_number
description: 'A distinctive alpha-numeric identification code assigned by the
manufacturer or distributor to a specific quantity of manufactured material
or product within a batch. Synonym: Batch Number. The submitter should provide
lot number of the item followed by the item name for which the lot number was
provided.'
title: lot number
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{integer}, {text}'
slot_uri: MIXS:0001147
multivalued: true
alias: lot_number
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- agriculture
range: string
required: false
microb_cult_med:
name: microb_cult_med
description: A culture medium used to select for, grow, and maintain prokaryotic
microorganisms. Can be in either liquid (broth) or solidified (e.g. with agar)
forms. This field accepts terms listed under microbiological culture medium
(http://purl.obolibrary.org/obo/MICRO_0000067). If the proper descriptor is
not listed please use text to describe the culture medium.
title: microbiological culture medium
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text}|{termLabel} {[termID]}'
slot_uri: MIXS:0001216
multivalued: false
alias: microb_cult_med
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
range: string
required: false
part_plant_animal:
name: part_plant_animal
description: The anatomical part of the organism being involved in food production
or consumption; e.g., a carrot is the root of the plant (root vegetable). This
field accepts terms listed under part of plant or animal (http://purl.obolibrary.org/obo/FOODON_03420116).
title: part of plant or animal
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text}|{termLabel} {[termID]}'
slot_uri: MIXS:0001149
multivalued: true
alias: part_plant_animal
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
range: string
required: false
repository_name:
name: repository_name
description: The name of the institution where the sample or DNA extract is held
or "sample not available" if the sample was used in its entirety for analysis
or otherwise not retained.
title: repository name
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text}'
slot_uri: MIXS:0001152
multivalued: true
alias: repository_name
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
range: string
required: false
samp_collect_method:
name: samp_collect_method
description: The method employed for collecting the sample.
title: sample collection method
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{PMID}|{DOI}|{URL}|{text}'
slot_uri: MIXS:0001225
multivalued: false
alias: samp_collect_method
owner: food-animal and animal feed
domain_of:
- food-food production facility
- food-animal and animal feed
- agriculture
range: string
required: false
samp_pooling:
name: samp_pooling
description: Physical combination of several instances of like material, e.g.
RNA extracted from samples or dishes of cell cultures into one big aliquot of
cells. Please provide a short description of the samples that were pooled.
title: sample pooling
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text}'
slot_uri: MIXS:0001153
multivalued: true
alias: samp_pooling
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- agriculture
range: string
required: false
samp_rep_biol:
name: samp_rep_biol
description: Measurements of biologically distinct samples that show biological
variation.
title: biological sample replicate
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0001226
multivalued: false
alias: samp_rep_biol
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
range: quantity value
required: false
samp_rep_tech:
name: samp_rep_tech
description: Repeated measurements of the same sample that show independent measures
of the noise associated with the equipment and the protocols.
title: technical sample replicate
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0001227
multivalued: false
alias: samp_rep_tech
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
range: quantity value
required: false
samp_source_mat_cat:
name: samp_source_mat_cat
description: This is the scientific role or category that the subject organism
or material has with respect to an investigation. This field accepts terms
listed under specimen source material category (http://purl.obolibrary.org/obo/GENEPIO_0001237
or http://purl.obolibrary.org/obo/OBI_0100051).
title: sample source material category
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{termLabel} {[termID]}'
slot_uri: MIXS:0001154
multivalued: false
alias: samp_source_mat_cat
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
range: string
required: false
samp_stor_device:
name: samp_stor_device
description: The container used to store the sample. This field accepts terms
listed under container (http://purl.obolibrary.org/obo/NCIT_C43186). If the
proper descriptor is not listed please use text to describe the storage device.
title: sample storage device
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text}|{termLabel} {[termID]}'
slot_uri: MIXS:0001228
multivalued: false
alias: samp_stor_device
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
range: string
required: false
samp_stor_media:
name: samp_stor_media
description: The liquid that is added to the sample collection device prior to
sampling. If the sample is pre-hydrated, indicate the liquid media the sample
is pre-hydrated with for storage purposes. This field accepts terms listed under
microbiological culture medium (http://purl.obolibrary.org/obo/MICRO_0000067).
If the proper descriptor is not listed please use text to describe the sample
storage media.
title: sample storage media
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text}|{termLabel} {[termID]}'
slot_uri: MIXS:0001229
multivalued: false
alias: samp_stor_media
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
range: string
required: false
samp_transport_dur:
name: samp_transport_dur
description: The duration of time from when the sample was collected until processed.
Indicate the duration for which the sample was stored written in ISO 8601 format.
title: sample transport duration
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0001231
multivalued: false
alias: samp_transport_dur
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
range: quantity value
required: false
samp_transport_temp:
name: samp_transport_temp
description: Temperature at which sample was transported, e.g. -20 or 4 degree
Celsius.
title: sample transport temperature
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{float} {unit} {text}'
slot_uri: MIXS:0001232
multivalued: false
alias: samp_transport_temp
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
range: string
required: false
sequencing_kit:
name: sequencing_kit
description: Pre-filled, ready-to-use reagent cartridges. Used to produce improved
chemistry, cluster density and read length as well as improve quality (Q) scores.
Reagent components are encoded to interact with the sequencing system to validate
compatibility with user-defined applications. Indicate name of the sequencing
kit.
title: sequencing kit
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text}'
slot_uri: MIXS:0001155
multivalued: false
alias: sequencing_kit
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
range: string
required: false
sequencing_location:
name: sequencing_location
description: The location the sequencing run was performed. Indicate the name
of the lab or core facility where samples were sequenced.
title: sequencing location
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text}'
slot_uri: MIXS:0001156
multivalued: false
alias: sequencing_location
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- agriculture
range: string
required: false
serovar_or_serotype:
name: serovar_or_serotype
description: A characterization of a cell or microorganism based on the antigenic
properties of the molecules on its surface. Indicate the name of a serovar or
serotype of interest. This field accepts terms under organism (http://purl.obolibrary.org/obo/NCIT_C14250).
This field also accepts identification numbers from NCBI under https://www.ncbi.nlm.nih.gov/taxonomy.
title: serovar or serotype
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{termLabel} {[termID]}|{integer}'
slot_uri: MIXS:0001157
multivalued: true
alias: serovar_or_serotype
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-farm environment
- food-animal and animal feed
range: string
required: false
spikein_AMR:
name: spikein_AMR
description: Qualitative description of a microbial response to antimicrobial
agents. Bacteria may be susceptible or resistant to a broad range of antibiotic
drugs or drug classes, with several intermediate states or phases. This field
accepts terms under antimicrobial phenotype (http://purl.obolibrary.org/obo/ARO_3004299).
title: antimicrobial phenotype of spike-in bacteria
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{float} {unit};{termLabel} {[termID]}'
slot_uri: MIXS:0001235
multivalued: true
alias: spikein_AMR
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-animal and animal feed
range: string
required: false
spikein_antibiotic:
name: spikein_antibiotic
description: Antimicrobials used in research study to assess effects of exposure
on microbiome of a specific site. Please list antimicrobial, common name and/or
class and concentration used for spike-in.
title: spike-in with antibiotics
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text} {integer}'
slot_uri: MIXS:0001171
multivalued: true
alias: spikein_antibiotic
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-farm environment
- food-animal and animal feed
range: string
required: false
spikein_growth_med:
name: spikein_growth_med
description: A liquid or gel containing nutrients, salts, and other factors formulated
to support the growth of microorganisms, cells, or plants (National Cancer Institute
Thesaurus). A growth medium is a culture medium which has the disposition to
encourage growth of particular bacteria to the exclusion of others in the same
growth environment. In this case, list the culture medium used to propagate
the spike-in bacteria during preparation of spike-in inoculum. This field accepts
terms listed under microbiological culture medium (http://purl.obolibrary.org/obo/MICRO_0000067).
If the proper descriptor is not listed please use text to describe the spike
in growth media.
title: spike-in growth medium
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text}|{termLabel} {[termID]}'
slot_uri: MIXS:0001169
multivalued: true
alias: spikein_growth_med
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-farm environment
- food-animal and animal feed
range: string
required: false
spikein_metal:
name: spikein_metal
description: Heavy metals used in research study to assess effects of exposure
on microbiome of a specific site. Please list heavy metals and concentration
used for spike-in.
title: spike-in with heavy metals
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text} {integer}'
slot_uri: MIXS:0001172
multivalued: true
alias: spikein_metal
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-farm environment
- food-animal and animal feed
range: string
required: false
spikein_org:
name: spikein_org
description: Taxonomic information about the spike-in organism(s). This field
accepts terms under organism (http://purl.obolibrary.org/obo/NCIT_C14250). This
field also accepts identification numbers from NCBI under https://www.ncbi.nlm.nih.gov/taxonomy.
Multiple terms can be separated by pipes.
title: spike in organism
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{termLabel} {[termID]}|{integer}'
slot_uri: MIXS:0001167
multivalued: true
alias: spikein_org
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-farm environment
- food-animal and animal feed
range: string
required: false
spikein_serovar:
name: spikein_serovar
description: Taxonomic information about the spike-in organism(s) at the serovar
or serotype level. This field accepts terms under organism (http://purl.obolibrary.org/obo/NCIT_C14250).
This field also accepts identification numbers from NCBI under https://www.ncbi.nlm.nih.gov/taxonomy.
Multiple terms can be separated by pipes.
title: spike-in bacterial serovar or serotype
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{termLabel} {[termID]}|{integer}'
slot_uri: MIXS:0001168
multivalued: true
alias: spikein_serovar
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-farm environment
- food-animal and animal feed
range: string
required: false
spikein_strain:
name: spikein_strain
description: Taxonomic information about the spike-in organism(s) at the strain
level. This field accepts terms under organism (http://purl.obolibrary.org/obo/NCIT_C14250).
This field also accepts identification numbers from NCBI under https://www.ncbi.nlm.nih.gov/taxonomy.
Multiple terms can be separated by pipes.
title: spike-in microbial strain
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{termLabel} {[termID]}|{integer}'
slot_uri: MIXS:0001170
multivalued: true
alias: spikein_strain
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-farm environment
- food-animal and animal feed
- agriculture
range: string
required: false
study_design:
name: study_design
description: A plan specification comprised of protocols (which may specify how
and what kinds of data will be gathered) that are executed as part of an investigation
and is realized during a study design execution. This field accepts terms under
study design (http://purl.obolibrary.org/obo/OBI_0500000). If the proper descriptor
is not listed please use text to describe the study design. Multiple terms can
be separated by pipes.
title: study design
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text}|{termLabel} {[termID]}'
slot_uri: MIXS:0001236
multivalued: true
alias: study_design
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
range: string
required: false
study_inc_dur:
name: study_inc_dur
description: Sample incubation duration if unpublished or unvalidated method is
used. Indicate the timepoint written in ISO 8601 format.
title: study incubation duration
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0001237
multivalued: false
alias: study_inc_dur
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
range: quantity value
required: false
study_inc_temp:
name: study_inc_temp
description: Sample incubation temperature if unpublished or unvalidated method
is used.
title: study incubation temperature
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0001238
multivalued: false
alias: study_inc_temp
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
range: quantity value
required: false
study_timecourse:
name: study_timecourse
description: For time-course research studies involving samples of the food commodity,
indicate the total duration of the time-course study.
title: time-course duration
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0001239
multivalued: false
alias: study_timecourse
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
range: quantity value
required: false
study_tmnt:
name: study_tmnt
description: A process in which the act is intended to modify or alter some other
material entity. From the study design, each treatment is comprised of one
level of one or multiple factors. This field accepts terms listed under treatment
(http://purl.obolibrary.org/obo/MCO_0000866). If the proper descriptor is not
listed please use text to describe the study treatment. Multiple terms can be
separated by one or more pipes.
title: study treatment
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text}|{termLabel} {[termID]}'
slot_uri: MIXS:0001240
multivalued: true
alias: study_tmnt
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-food production facility
- food-animal and animal feed
range: string
required: false
timepoint:
name: timepoint
description: Time point at which a sample or observation is made or taken from
a biomaterial as measured from some reference point. Indicate the timepoint
written in ISO 8601 format.
title: timepoint
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0001173
multivalued: false
alias: timepoint
owner: food-animal and animal feed
domain_of:
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
range: double
required: false
misc_param:
name: misc_param
description: Any other measurement performed or parameter collected, that is not
listed here
title: miscellaneous parameter
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text};{float} {unit}'
slot_uri: MIXS:0000752
multivalued: true
alias: misc_param
owner: food-animal and animal feed
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- soil
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- air
- agriculture
range: string
required: false