Class: Food-humanFoods

food-human foods

URI: MIXS:Food-humanFoods

Inheritance

• Food-humanFoods
  • Food-humanFoodsMIGSEukaryote [ MIGSEukaryote]
  • Food-humanFoodsMIGSBacteria [ MIGSBacteria]
  • Food-humanFoodsMIGSPlant [ MIGSPlant]
  • Food-humanFoodsMIGSVirus [ MIGSVirus]
  • Food-humanFoodsMIGSOrg [ MIGSOrg]
  • Food-humanFoodsMIMS [ MIMS]
  • Food-humanFoodsMIMARKSSpecimen [ MIMARKSSpecimen]
  • Food-humanFoodsMIMARKSSurvey [ MIMARKSSurvey]
  • Food-humanFoodsMISAG [ MISAG]
  • Food-humanFoodsMIMAG [ MIMAG]
  • Food-humanFoodsMIUVIG [ MIUVIG]

Slots

Name	Cardinality and Range	Description	Inheritance
lat_lon	0..1 String	The geographical origin of the sample as defined by latitude and longitude	direct
depth	0..1 QuantityValue	The vertical distance below local surface, e	direct
alt	0..1 QuantityValue	Altitude is a term used to identify heights of objects such as airplanes, spa...	direct
elev	0..1 QuantityValue	Elevation of the sampling site is its height above a fixed reference point, m...	direct
temp	0..1 QuantityValue	Temperature of the sample at the time of sampling	direct
geo_loc_name	0..1 String	The geographical origin of the sample as defined by the country or sea name f...	direct
collection_date	0..1 Date	The time of sampling, either as an instance (single point in time) or interva...	direct
env_broad_scale	0..1 String	Report the major environmental system the sample or specimen came from	direct
env_local_scale	0..1 String	Report the entity or entities which are in the sample or specimen’s local vic...	direct
env_medium	0..1 String	Report the environmental material(s) immediately surrounding the sample or sp...	direct
samp_collect_device	0..1 String	The device used to collect an environmental sample	direct
organism_count	0..* OrganismCountEnum	Total cell count of any organism (or group of organisms) per gram, volume or ...	direct
spikein_count	0..1 SpikeinCountEnum	Total cell count of any organism (or group of organisms) per gram, volume or ...	direct
samp_stor_temp	0..1 QuantityValue	Temperature at which sample was stored, e	direct
samp_stor_dur	0..1 String	Duration for which the sample was stored	direct
pool_dna_extracts	0..1 String	Indicate whether multiple DNA extractions were mixed	direct
samp_stor_loc	0..1 String	Location at which sample was stored, usually name of a specific freezer/room	direct
genetic_mod	0..1 String	Genetic modifications of the genome of an organism, which may occur naturally...	direct
perturbation	0..* String	Type of perturbation, e	direct
coll_site_geo_feat	0..1 String	Text or terms that describe the geographic feature where the food sample was ...	direct
food_product_type	0..* String	A food product type is a class of food products that is differentiated by its...	direct
IFSAC_category	0..* String	The IFSAC food categorization scheme has five distinct levels to which foods ...	direct
ferm_chem_add	0..* QuantityValue	Any chemicals that are added to the fermentation process to achieve the desir...	direct
ferm_chem_add_perc	0..* String	The amount of chemical added to the fermentation process	direct
ferm_headspace_oxy	0..1 String	The amount of headspace oxygen in a fermentation vessel	direct
ferm_medium	0..1 String	The growth medium used for the fermented food fermentation process, which sup...	direct
ferm_pH	0..1 Double	The pH of the fermented food fermentation process	direct
ferm_rel_humidity	0..1 QuantityValue	The relative humidity of the fermented food fermentation process	direct
ferm_temp	0..1 QuantityValue	The temperature of the fermented food fermentation process	direct
ferm_time	0..1 String	The time duration of the fermented food fermentation process	direct
ferm_vessel	0..1 String	The type of vessel used for containment of the fermentation	direct
bacterial_density	0..1 QuantityValue	Number of bacteria in sample, as defined by bacteria density (http://purl	direct
cons_food_stor_dur	0..1 String	The storage duration of the food commodity by the consumer, prior to onset of...	direct
cons_food_stor_temp	0..1 String	Temperature at which food commodity was stored by the consumer, prior to onse...	direct
cons_purch_date	0..1 Date	The date a food product was purchased by consumer	direct
cons_qty_purchased	0..1 String	The quantity of food purchased by consumer	direct
cult_isol_date	0..1 Date	A culture isolation date is a date-time entity marking the end of a process i...	direct
cult_result	0..1 CultResultEnum	Any result of a bacterial culture experiment reported as a binary assessment ...	direct
cult_result_org	0..* String	Taxonomic information about the cultured organism(s)	direct
cult_target	0..* String	The target microbial analyte in terms of investigation scope	direct
dietary_claim_use	0..* String	These descriptors are used either for foods intended for special dietary use ...	direct
enrichment_protocol	0..1 String	The microbiological workflow or protocol followed to test for the presence or...	direct
food_additive	0..* String	A substance or substances added to food to maintain or improve safety and fre...	direct
food_allergen_label	0..* String	A label indication that the product contains a recognized allergen	direct
food_contact_surf	0..* String	The specific container or coating materials in direct contact with the food	direct
food_contain_wrap	0..1 String	Type of container or wrapping defined by the main container material, the con...	direct
food_cooking_proc	0..* String	The transformation of raw food by the application of heat	direct
food_dis_point	0..* String	A reference to a place on the Earth, by its name or by its geographical locat...	direct
food_ingredient	0..* String	In this field, please list individual ingredients for multi-component food [F...	direct
food_name_status	0..1 String	A datum indicating that use of a food product name is regulated in some legal...	direct
food_origin	0..1 String	A reference to a place on the Earth, by its name or by its geographical locat...	direct
food_pack_capacity	0..1 QuantityValue	The maximum number of product units within a package	direct
food_pack_integrity	0..* String	A term label and term id to describe the state of the packing material and te...	direct
food_pack_medium	0..* String	The medium in which the food is packed for preservation and handling or the m...	direct
food_preserv_proc	0..* String	The methods contributing to the prevention or retardation of microbial, enzym...	direct
food_prior_contact	0..* String	The material the food contacted (e	direct
food_prod	0..* String	Descriptors of the food production system or of the agricultural environment ...	direct
food_prod_synonym	0..* String	Other names by which the food product is known by (e	direct
food_product_qual	0..1 String	Descriptors for describing food visually or via other senses, which is useful...	direct
food_quality_date	0..1 String	The date recommended for the use of the product while at peak quality, this d...	direct
food_source	0..1 String	Type of plant or animal from which the food product or its major ingredient i...	direct
food_trace_list	0..1 FoodTraceListEnum	The FDA is proposing to establish additional traceability recordkeeping requi...	direct
food_trav_mode	0..* String	A descriptor for the method of movement of food commodity along the food dist...	direct
food_trav_vehic	0..* String	A descriptor for the mobile machine which is used to transport food commoditi...	direct
food_treat_proc	0..* String	Used to specifically characterize a food product based on the treatment or pr...	direct
HACCP_term	0..* String	Hazard Analysis Critical Control Points (HACCP) food safety terms; This field...	direct
intended_consumer	0..* String	Food consumer type, human or animal, for which the food product is produced a...	direct
library_prep_kit	0..1 String	Packaged kits (containing adapters, indexes, enzymes, buffers etc	direct
lot_number	0..* String	A distinctive alpha-numeric identification code assigned by the manufacturer ...	direct
microb_cult_med	0..1 String	A culture medium used to select for, grow, and maintain prokaryotic microorga...	direct
microb_start	0..1 String	Any type of microorganisms used in food production	direct
microb_start_count	0..1 MicrobStartCountEnum	Total cell count of starter culture per gram, volume or area of sample and th...	direct
microb_start_inoc	0..1 QuantityValue	The amount of starter culture used to inoculate a new batch	direct
microb_start_prep	0..1 String	Information about the protocol or method used to prepare the starter inoculum	direct
microb_start_source	0..1 String	The source from which the microbial starter culture was sourced	direct
microb_start_taxID	0..1 String	Please include Genus species and strain ID, if known of microorganisms used i...	direct
nucl_acid_ext_kit	0..* String	The name of the extraction kit used to recover the nucleic acid fraction of a...	direct
num_samp_collect	0..1 QuantityValue	The number of samples collected during the current sampling event	direct
part_plant_animal	0..* String	The anatomical part of the organism being involved in food production or cons...	direct
repository_name	0..* String	The name of the institution where the sample or DNA extract is held or "sampl...	direct
sample_collec_method	0..1 String	The method employed for collecting the sample	direct
samp_pooling	0..* String	Physical combination of several instances of like material, e	direct
samp_rep_biol	0..1 QuantityValue	Measurements of biologically distinct samples that show biological variation	direct
samp_rep_tech	0..1 QuantityValue	Repeated measurements of the same sample that show independent measures of th...	direct
samp_source_mat_cat	0..1 String	This is the scientific role or category that the subject organism or material...	direct
samp_stor_device	0..1 String	The container used to store the sample	direct
samp_stor_media	0..1 String	The liquid that is added to the sample collection device prior to sampling	direct
samp_transport_cont	0..1 SampTransportContEnum	Conatiner in which the sample was stored during transport	direct
samp_transport_dur	0..1 QuantityValue	The duration of time from when the sample was collected until processed	direct
samp_transport_temp	0..1 String	Temperature at which sample was transported, e	direct
samp_purpose	0..1 String	The reason that the sample was collected	direct
sequencing_kit	0..1 String	Pre-filled, ready-to-use reagent cartridges	direct
sequencing_location	0..1 String	The location the sequencing run was performed	direct
serovar_or_serotype	0..* String	A characterization of a cell or microorganism based on the antigenic properti...	direct
spikein_AMR	0..* String	Qualitative description of a microbial response to antimicrobial agents	direct
spikein_antibiotic	0..* String	Antimicrobials used in research study to assess effects of exposure on microb...	direct
spikein_growth_med	0..* String	A liquid or gel containing nutrients, salts, and other factors formulated to ...	direct
spikein_metal	0..* String	Heavy metals used in research study to assess effects of exposure on microbio...	direct
spikein_org	0..* String	Taxonomic information about the spike-in organism(s)	direct
spikein_serovar	0..* String	Taxonomic information about the spike-in organism(s) at the serovar or seroty...	direct
spikein_strain	0..* String	Taxonomic information about the spike-in organism(s) at the strain level	direct
study_design	0..* String	A plan specification comprised of protocols (which may specify how and what k...	direct
study_inc_dur	0..1 QuantityValue	Sample incubation duration if unpublished or unvalidated method is used	direct
study_inc_temp	0..1 QuantityValue	Sample incubation temperature if unpublished or unvalidated method is used	direct
study_timecourse	0..1 QuantityValue	For time-course research studies involving samples of the food commodity, ind...	direct
study_tmnt	0..* String	A process in which the act is intended to modify or alter some other material...	direct
timepoint	0..1 Double	Time point at which a sample or observation is made or taken from a biomateri...	direct
misc_param	0..* String	Any other measurement performed or parameter collected, that is not listed he...	direct

Identifier and Mapping Information

Schema Source

• from schema: http://w3id.org/mixs

Mappings

Mapping Type	Mapped Value
self	MIXS:Food-humanFoods
native	MIXS:Food-humanFoods

LinkML Source

Direct

name: food-human foods
description: food-human foods
from_schema: http://w3id.org/mixs
slots:
- lat_lon
- depth
- alt
- elev
- temp
- geo_loc_name
- collection_date
- env_broad_scale
- env_local_scale
- env_medium
- samp_collect_device
- organism_count
- spikein_count
- samp_stor_temp
- samp_stor_dur
- pool_dna_extracts
- samp_stor_loc
- genetic_mod
- perturbation
- coll_site_geo_feat
- food_product_type
- IFSAC_category
- ferm_chem_add
- ferm_chem_add_perc
- ferm_headspace_oxy
- ferm_medium
- ferm_pH
- ferm_rel_humidity
- ferm_temp
- ferm_time
- ferm_vessel
- bacterial_density
- cons_food_stor_dur
- cons_food_stor_temp
- cons_purch_date
- cons_qty_purchased
- cult_isol_date
- cult_result
- cult_result_org
- cult_target
- dietary_claim_use
- enrichment_protocol
- food_additive
- food_allergen_label
- food_contact_surf
- food_contain_wrap
- food_cooking_proc
- food_dis_point
- food_ingredient
- food_name_status
- food_origin
- food_pack_capacity
- food_pack_integrity
- food_pack_medium
- food_preserv_proc
- food_prior_contact
- food_prod
- food_prod_synonym
- food_product_qual
- food_quality_date
- food_source
- food_trace_list
- food_trav_mode
- food_trav_vehic
- food_treat_proc
- HACCP_term
- intended_consumer
- library_prep_kit
- lot_number
- microb_cult_med
- microb_start
- microb_start_count
- microb_start_inoc
- microb_start_prep
- microb_start_source
- microb_start_taxID
- nucl_acid_ext_kit
- num_samp_collect
- part_plant_animal
- repository_name
- sample_collec_method
- samp_pooling
- samp_rep_biol
- samp_rep_tech
- samp_source_mat_cat
- samp_stor_device
- samp_stor_media
- samp_transport_cont
- samp_transport_dur
- samp_transport_temp
- samp_purpose
- sequencing_kit
- sequencing_location
- serovar_or_serotype
- spikein_AMR
- spikein_antibiotic
- spikein_growth_med
- spikein_metal
- spikein_org
- spikein_serovar
- spikein_strain
- study_design
- study_inc_dur
- study_inc_temp
- study_timecourse
- study_tmnt
- timepoint
- misc_param
slot_usage:
  samp_name:
    name: samp_name
    required: true
  project_name:
    name: project_name
    required: true
  lat_lon:
    name: lat_lon
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    - built environment
    - air
    - agriculture
    required: true
  geo_loc_name:
    name: geo_loc_name
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    - built environment
    - air
    - agriculture
    required: true
  collection_date:
    name: collection_date
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    - built environment
    - air
    - agriculture
    required: true
  env_broad_scale:
    name: env_broad_scale
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    - built environment
    - air
    - agriculture
    required: true
  env_local_scale:
    name: env_local_scale
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    - built environment
    - air
    - agriculture
    required: true
  env_medium:
    name: env_medium
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    - built environment
    - air
    - agriculture
    required: true
  seq_meth:
    name: seq_meth
    required: true
  samp_size:
    name: samp_size
    required: false
  samp_collect_device:
    name: samp_collect_device
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - agriculture
    required: false
  experimental_factor:
    name: experimental_factor
    required: false
  nucl_acid_ext:
    name: nucl_acid_ext
    required: false
  organism_count:
    name: organism_count
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - built environment
    - air
    - agriculture
    required: false
  spikein_count:
    name: spikein_count
    domain_of:
    - food-human foods
    - food-farm environment
    - food-animal and animal feed
    required: false
  samp_stor_temp:
    name: samp_stor_temp
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - agriculture
    required: false
  samp_stor_dur:
    name: samp_stor_dur
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    required: false
  samp_vol_we_dna_ext:
    name: samp_vol_we_dna_ext
    required: false
  pool_dna_extracts:
    name: pool_dna_extracts
    domain_of:
    - soil
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    - agriculture
    required: false
  temp:
    name: temp
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - built environment
    - air
    - agriculture
    required: false
  samp_stor_loc:
    name: samp_stor_loc
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    required: false
  genetic_mod:
    name: genetic_mod
    domain_of:
    - plant-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - agriculture
    required: false
  perturbation:
    name: perturbation
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-farm environment
    - food-animal and animal feed
    - air
    - agriculture
    required: false
  coll_site_geo_feat:
    name: coll_site_geo_feat
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    required: true
  food_product_type:
    name: food_product_type
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    required: true
  IFSAC_category:
    name: IFSAC_category
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    required: true
  ferm_chem_add:
    name: ferm_chem_add
    domain_of:
    - food-human foods
    required: false
  ferm_chem_add_perc:
    name: ferm_chem_add_perc
    domain_of:
    - food-human foods
    required: false
  ferm_headspace_oxy:
    name: ferm_headspace_oxy
    domain_of:
    - food-human foods
    required: false
  ferm_medium:
    name: ferm_medium
    domain_of:
    - food-human foods
    required: false
  ferm_pH:
    name: ferm_pH
    domain_of:
    - food-human foods
    required: false
  ferm_rel_humidity:
    name: ferm_rel_humidity
    domain_of:
    - food-human foods
    required: false
  ferm_temp:
    name: ferm_temp
    domain_of:
    - food-human foods
    required: false
  ferm_time:
    name: ferm_time
    domain_of:
    - food-human foods
    required: false
  ferm_vessel:
    name: ferm_vessel
    domain_of:
    - food-human foods
    required: false
  bacterial_density:
    name: bacterial_density
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    required: false
  cons_food_stor_dur:
    name: cons_food_stor_dur
    domain_of:
    - food-human foods
    - food-animal and animal feed
    required: false
  cons_food_stor_temp:
    name: cons_food_stor_temp
    domain_of:
    - food-human foods
    - food-animal and animal feed
    required: false
  cons_purch_date:
    name: cons_purch_date
    domain_of:
    - food-human foods
    - food-animal and animal feed
    required: false
  cons_qty_purchased:
    name: cons_qty_purchased
    domain_of:
    - food-human foods
    - food-animal and animal feed
    required: false
  cult_isol_date:
    name: cult_isol_date
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - agriculture
    required: false
  cult_result:
    name: cult_result
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    required: false
  cult_result_org:
    name: cult_result_org
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    required: false
  cult_target:
    name: cult_target
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    required: false
  dietary_claim_use:
    name: dietary_claim_use
    domain_of:
    - food-human foods
    - food-food production facility
    required: false
  enrichment_protocol:
    name: enrichment_protocol
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - agriculture
    required: false
  food_additive:
    name: food_additive
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    required: false
  food_allergen_label:
    name: food_allergen_label
    domain_of:
    - food-human foods
    - food-food production facility
    required: false
  food_contact_surf:
    name: food_contact_surf
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    required: false
  food_contain_wrap:
    name: food_contain_wrap
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    required: false
  food_cooking_proc:
    name: food_cooking_proc
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    required: false
  food_dis_point:
    name: food_dis_point
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    required: false
  food_ingredient:
    name: food_ingredient
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    required: false
  food_name_status:
    name: food_name_status
    domain_of:
    - food-human foods
    - food-food production facility
    required: false
  food_origin:
    name: food_origin
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    required: false
  food_pack_capacity:
    name: food_pack_capacity
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    required: false
  food_pack_integrity:
    name: food_pack_integrity
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    required: false
  food_pack_medium:
    name: food_pack_medium
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    required: false
  food_preserv_proc:
    name: food_preserv_proc
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    required: false
  food_prior_contact:
    name: food_prior_contact
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    required: false
  food_prod:
    name: food_prod
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    - agriculture
    required: false
  food_prod_synonym:
    name: food_prod_synonym
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    required: false
  food_product_qual:
    name: food_product_qual
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    required: false
  food_quality_date:
    name: food_quality_date
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    required: false
  food_source:
    name: food_source
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    required: false
  food_trace_list:
    name: food_trace_list
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    required: false
  food_trav_mode:
    name: food_trav_mode
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - agriculture
    required: false
  food_trav_vehic:
    name: food_trav_vehic
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - agriculture
    required: false
  food_treat_proc:
    name: food_treat_proc
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    required: false
  HACCP_term:
    name: HACCP_term
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    required: false
  intended_consumer:
    name: intended_consumer
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    required: false
  library_prep_kit:
    name: library_prep_kit
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - agriculture
    required: false
  lot_number:
    name: lot_number
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - agriculture
    required: false
  microb_cult_med:
    name: microb_cult_med
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    required: false
  microb_start:
    name: microb_start
    domain_of:
    - food-human foods
    required: false
  microb_start_count:
    name: microb_start_count
    domain_of:
    - food-human foods
    required: false
  microb_start_inoc:
    name: microb_start_inoc
    domain_of:
    - food-human foods
    required: false
  microb_start_prep:
    name: microb_start_prep
    domain_of:
    - food-human foods
    required: false
  microb_start_source:
    name: microb_start_source
    domain_of:
    - food-human foods
    required: false
  microb_start_taxID:
    name: microb_start_taxID
    domain_of:
    - food-human foods
    required: false
  nucl_acid_ext_kit:
    name: nucl_acid_ext_kit
    domain_of:
    - food-human foods
    - food-food production facility
    required: false
  num_samp_collect:
    name: num_samp_collect
    domain_of:
    - food-human foods
    - food-food production facility
    required: false
  part_plant_animal:
    name: part_plant_animal
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    required: false
  repository_name:
    name: repository_name
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    required: false
  sample_collec_method:
    name: sample_collec_method
    domain_of:
    - food-human foods
    required: false
  samp_pooling:
    name: samp_pooling
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - agriculture
    required: false
  samp_rep_biol:
    name: samp_rep_biol
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    required: false
  samp_rep_tech:
    name: samp_rep_tech
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    required: false
  samp_source_mat_cat:
    name: samp_source_mat_cat
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    required: false
  samp_stor_device:
    name: samp_stor_device
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    required: false
  samp_stor_media:
    name: samp_stor_media
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    required: false
  samp_transport_cont:
    name: samp_transport_cont
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    required: false
  samp_transport_dur:
    name: samp_transport_dur
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    required: false
  samp_transport_temp:
    name: samp_transport_temp
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    required: false
  samp_purpose:
    name: samp_purpose
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    required: false
  sequencing_kit:
    name: sequencing_kit
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    required: false
  sequencing_location:
    name: sequencing_location
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - agriculture
    required: false
  serovar_or_serotype:
    name: serovar_or_serotype
    domain_of:
    - food-human foods
    - food-farm environment
    - food-animal and animal feed
    required: false
  spikein_AMR:
    name: spikein_AMR
    domain_of:
    - food-human foods
    - food-animal and animal feed
    required: false
  spikein_antibiotic:
    name: spikein_antibiotic
    domain_of:
    - food-human foods
    - food-farm environment
    - food-animal and animal feed
    required: false
  spikein_growth_med:
    name: spikein_growth_med
    domain_of:
    - food-human foods
    - food-farm environment
    - food-animal and animal feed
    required: false
  spikein_metal:
    name: spikein_metal
    domain_of:
    - food-human foods
    - food-farm environment
    - food-animal and animal feed
    required: false
  spikein_org:
    name: spikein_org
    domain_of:
    - food-human foods
    - food-farm environment
    - food-animal and animal feed
    required: false
  spikein_serovar:
    name: spikein_serovar
    domain_of:
    - food-human foods
    - food-farm environment
    - food-animal and animal feed
    required: false
  spikein_strain:
    name: spikein_strain
    domain_of:
    - food-human foods
    - food-farm environment
    - food-animal and animal feed
    - agriculture
    required: false
  study_design:
    name: study_design
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    required: false
  study_inc_dur:
    name: study_inc_dur
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    required: false
  study_inc_temp:
    name: study_inc_temp
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    required: false
  study_timecourse:
    name: study_timecourse
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    required: false
  study_tmnt:
    name: study_tmnt
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    required: false
  timepoint:
    name: timepoint
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    required: false
  misc_param:
    name: misc_param
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - air
    - agriculture
    required: false

Induced

name: food-human foods
description: food-human foods
from_schema: http://w3id.org/mixs
slot_usage:
  samp_name:
    name: samp_name
    required: true
  project_name:
    name: project_name
    required: true
  lat_lon:
    name: lat_lon
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    - built environment
    - air
    - agriculture
    required: true
  geo_loc_name:
    name: geo_loc_name
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    - built environment
    - air
    - agriculture
    required: true
  collection_date:
    name: collection_date
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    - built environment
    - air
    - agriculture
    required: true
  env_broad_scale:
    name: env_broad_scale
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    - built environment
    - air
    - agriculture
    required: true
  env_local_scale:
    name: env_local_scale
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    - built environment
    - air
    - agriculture
    required: true
  env_medium:
    name: env_medium
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    - built environment
    - air
    - agriculture
    required: true
  seq_meth:
    name: seq_meth
    required: true
  samp_size:
    name: samp_size
    required: false
  samp_collect_device:
    name: samp_collect_device
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - agriculture
    required: false
  experimental_factor:
    name: experimental_factor
    required: false
  nucl_acid_ext:
    name: nucl_acid_ext
    required: false
  organism_count:
    name: organism_count
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - built environment
    - air
    - agriculture
    required: false
  spikein_count:
    name: spikein_count
    domain_of:
    - food-human foods
    - food-farm environment
    - food-animal and animal feed
    required: false
  samp_stor_temp:
    name: samp_stor_temp
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - agriculture
    required: false
  samp_stor_dur:
    name: samp_stor_dur
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    required: false
  samp_vol_we_dna_ext:
    name: samp_vol_we_dna_ext
    required: false
  pool_dna_extracts:
    name: pool_dna_extracts
    domain_of:
    - soil
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    - agriculture
    required: false
  temp:
    name: temp
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - built environment
    - air
    - agriculture
    required: false
  samp_stor_loc:
    name: samp_stor_loc
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    required: false
  genetic_mod:
    name: genetic_mod
    domain_of:
    - plant-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - agriculture
    required: false
  perturbation:
    name: perturbation
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-farm environment
    - food-animal and animal feed
    - air
    - agriculture
    required: false
  coll_site_geo_feat:
    name: coll_site_geo_feat
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    required: true
  food_product_type:
    name: food_product_type
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    required: true
  IFSAC_category:
    name: IFSAC_category
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    required: true
  ferm_chem_add:
    name: ferm_chem_add
    domain_of:
    - food-human foods
    required: false
  ferm_chem_add_perc:
    name: ferm_chem_add_perc
    domain_of:
    - food-human foods
    required: false
  ferm_headspace_oxy:
    name: ferm_headspace_oxy
    domain_of:
    - food-human foods
    required: false
  ferm_medium:
    name: ferm_medium
    domain_of:
    - food-human foods
    required: false
  ferm_pH:
    name: ferm_pH
    domain_of:
    - food-human foods
    required: false
  ferm_rel_humidity:
    name: ferm_rel_humidity
    domain_of:
    - food-human foods
    required: false
  ferm_temp:
    name: ferm_temp
    domain_of:
    - food-human foods
    required: false
  ferm_time:
    name: ferm_time
    domain_of:
    - food-human foods
    required: false
  ferm_vessel:
    name: ferm_vessel
    domain_of:
    - food-human foods
    required: false
  bacterial_density:
    name: bacterial_density
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    required: false
  cons_food_stor_dur:
    name: cons_food_stor_dur
    domain_of:
    - food-human foods
    - food-animal and animal feed
    required: false
  cons_food_stor_temp:
    name: cons_food_stor_temp
    domain_of:
    - food-human foods
    - food-animal and animal feed
    required: false
  cons_purch_date:
    name: cons_purch_date
    domain_of:
    - food-human foods
    - food-animal and animal feed
    required: false
  cons_qty_purchased:
    name: cons_qty_purchased
    domain_of:
    - food-human foods
    - food-animal and animal feed
    required: false
  cult_isol_date:
    name: cult_isol_date
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - agriculture
    required: false
  cult_result:
    name: cult_result
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    required: false
  cult_result_org:
    name: cult_result_org
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    required: false
  cult_target:
    name: cult_target
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    required: false
  dietary_claim_use:
    name: dietary_claim_use
    domain_of:
    - food-human foods
    - food-food production facility
    required: false
  enrichment_protocol:
    name: enrichment_protocol
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - agriculture
    required: false
  food_additive:
    name: food_additive
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    required: false
  food_allergen_label:
    name: food_allergen_label
    domain_of:
    - food-human foods
    - food-food production facility
    required: false
  food_contact_surf:
    name: food_contact_surf
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    required: false
  food_contain_wrap:
    name: food_contain_wrap
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    required: false
  food_cooking_proc:
    name: food_cooking_proc
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    required: false
  food_dis_point:
    name: food_dis_point
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    required: false
  food_ingredient:
    name: food_ingredient
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    required: false
  food_name_status:
    name: food_name_status
    domain_of:
    - food-human foods
    - food-food production facility
    required: false
  food_origin:
    name: food_origin
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    required: false
  food_pack_capacity:
    name: food_pack_capacity
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    required: false
  food_pack_integrity:
    name: food_pack_integrity
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    required: false
  food_pack_medium:
    name: food_pack_medium
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    required: false
  food_preserv_proc:
    name: food_preserv_proc
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    required: false
  food_prior_contact:
    name: food_prior_contact
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    required: false
  food_prod:
    name: food_prod
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    - agriculture
    required: false
  food_prod_synonym:
    name: food_prod_synonym
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    required: false
  food_product_qual:
    name: food_product_qual
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    required: false
  food_quality_date:
    name: food_quality_date
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    required: false
  food_source:
    name: food_source
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    required: false
  food_trace_list:
    name: food_trace_list
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    required: false
  food_trav_mode:
    name: food_trav_mode
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - agriculture
    required: false
  food_trav_vehic:
    name: food_trav_vehic
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - agriculture
    required: false
  food_treat_proc:
    name: food_treat_proc
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    required: false
  HACCP_term:
    name: HACCP_term
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    required: false
  intended_consumer:
    name: intended_consumer
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    required: false
  library_prep_kit:
    name: library_prep_kit
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - agriculture
    required: false
  lot_number:
    name: lot_number
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - agriculture
    required: false
  microb_cult_med:
    name: microb_cult_med
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    required: false
  microb_start:
    name: microb_start
    domain_of:
    - food-human foods
    required: false
  microb_start_count:
    name: microb_start_count
    domain_of:
    - food-human foods
    required: false
  microb_start_inoc:
    name: microb_start_inoc
    domain_of:
    - food-human foods
    required: false
  microb_start_prep:
    name: microb_start_prep
    domain_of:
    - food-human foods
    required: false
  microb_start_source:
    name: microb_start_source
    domain_of:
    - food-human foods
    required: false
  microb_start_taxID:
    name: microb_start_taxID
    domain_of:
    - food-human foods
    required: false
  nucl_acid_ext_kit:
    name: nucl_acid_ext_kit
    domain_of:
    - food-human foods
    - food-food production facility
    required: false
  num_samp_collect:
    name: num_samp_collect
    domain_of:
    - food-human foods
    - food-food production facility
    required: false
  part_plant_animal:
    name: part_plant_animal
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    required: false
  repository_name:
    name: repository_name
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    required: false
  sample_collec_method:
    name: sample_collec_method
    domain_of:
    - food-human foods
    required: false
  samp_pooling:
    name: samp_pooling
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - agriculture
    required: false
  samp_rep_biol:
    name: samp_rep_biol
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    required: false
  samp_rep_tech:
    name: samp_rep_tech
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    required: false
  samp_source_mat_cat:
    name: samp_source_mat_cat
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    required: false
  samp_stor_device:
    name: samp_stor_device
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    required: false
  samp_stor_media:
    name: samp_stor_media
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    required: false
  samp_transport_cont:
    name: samp_transport_cont
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    required: false
  samp_transport_dur:
    name: samp_transport_dur
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    required: false
  samp_transport_temp:
    name: samp_transport_temp
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    required: false
  samp_purpose:
    name: samp_purpose
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    required: false
  sequencing_kit:
    name: sequencing_kit
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    required: false
  sequencing_location:
    name: sequencing_location
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - agriculture
    required: false
  serovar_or_serotype:
    name: serovar_or_serotype
    domain_of:
    - food-human foods
    - food-farm environment
    - food-animal and animal feed
    required: false
  spikein_AMR:
    name: spikein_AMR
    domain_of:
    - food-human foods
    - food-animal and animal feed
    required: false
  spikein_antibiotic:
    name: spikein_antibiotic
    domain_of:
    - food-human foods
    - food-farm environment
    - food-animal and animal feed
    required: false
  spikein_growth_med:
    name: spikein_growth_med
    domain_of:
    - food-human foods
    - food-farm environment
    - food-animal and animal feed
    required: false
  spikein_metal:
    name: spikein_metal
    domain_of:
    - food-human foods
    - food-farm environment
    - food-animal and animal feed
    required: false
  spikein_org:
    name: spikein_org
    domain_of:
    - food-human foods
    - food-farm environment
    - food-animal and animal feed
    required: false
  spikein_serovar:
    name: spikein_serovar
    domain_of:
    - food-human foods
    - food-farm environment
    - food-animal and animal feed
    required: false
  spikein_strain:
    name: spikein_strain
    domain_of:
    - food-human foods
    - food-farm environment
    - food-animal and animal feed
    - agriculture
    required: false
  study_design:
    name: study_design
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    required: false
  study_inc_dur:
    name: study_inc_dur
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    required: false
  study_inc_temp:
    name: study_inc_temp
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    required: false
  study_timecourse:
    name: study_timecourse
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    required: false
  study_tmnt:
    name: study_tmnt
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    required: false
  timepoint:
    name: timepoint
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    required: false
  misc_param:
    name: misc_param
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - air
    - agriculture
    required: false
attributes:
  lat_lon:
    name: lat_lon
    description: The geographical origin of the sample as defined by latitude and
      longitude. The values should be reported in decimal degrees and in WGS84 system
    title: geographic location (latitude and longitude)
    from_schema: http://w3id.org/mixs
    is_a: environment field
    string_serialization: '{float} {float}'
    slot_uri: MIXS:0000009
    multivalued: false
    alias: lat_lon
    owner: food-human foods
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    - built environment
    - air
    - agriculture
    range: string
    required: true
  depth:
    name: depth
    annotations:
      expected_value:
        tag: expected_value
        value: measurement value
    description: The vertical distance below local surface, e.g. for sediment or soil
      samples depth is measured from sediment or soil surface, respectively. Depth
      can be reported as an interval for subsurface samples.
    title: depth
    examples:
    - value: 10 meter
    from_schema: http://w3id.org/mixs
    aliases:
    - depth
    is_a: environment field
    slot_uri: MIXS:0000018
    multivalued: false
    alias: depth
    owner: food-human foods
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - built environment
    - air
    - agriculture
    range: quantity value
  alt:
    name: alt
    annotations:
      expected_value:
        tag: expected_value
        value: measurement value
    description: Altitude is a term used to identify heights of objects such as airplanes,
      space shuttles, rockets, atmospheric balloons and heights of places such as
      atmospheric layers and clouds. It is used to measure the height of an object
      which is above the earth's surface. In this context, the altitude measurement
      is the vertical distance between the earth's surface above sea level and the
      sampled position in the air
    title: altitude
    examples:
    - value: 100 meter
    from_schema: http://w3id.org/mixs
    aliases:
    - altitude
    is_a: environment field
    slot_uri: MIXS:0000094
    multivalued: false
    alias: alt
    owner: food-human foods
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - built environment
    - air
    - agriculture
    range: quantity value
  elev:
    name: elev
    annotations:
      expected_value:
        tag: expected_value
        value: measurement value
    description: Elevation of the sampling site is its height above a fixed reference
      point, most commonly the mean sea level. Elevation is mainly used when referring
      to points on the earth's surface, while altitude is used for points above the
      surface, such as an aircraft in flight or a spacecraft in orbit.
    title: elevation
    examples:
    - value: 100 meter
    from_schema: http://w3id.org/mixs
    aliases:
    - elevation
    is_a: environment field
    slot_uri: MIXS:0000093
    multivalued: false
    alias: elev
    owner: food-human foods
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - built environment
    - air
    - agriculture
    range: quantity value
  temp:
    name: temp
    description: Temperature of the sample at the time of sampling.
    title: temperature
    from_schema: http://w3id.org/mixs
    is_a: environment field
    slot_uri: MIXS:0000113
    multivalued: false
    alias: temp
    owner: food-human foods
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - built environment
    - air
    - agriculture
    range: quantity value
    required: false
  geo_loc_name:
    name: geo_loc_name
    description: The geographical origin of the sample as defined by the country or
      sea name followed by specific region name. Country or sea names should be chosen
      from the INSDC country list (http://insdc.org/country.html), or the GAZ ontology
      (http://purl.bioontology.org/ontology/GAZ)
    title: geographic location (country and/or sea,region)
    from_schema: http://w3id.org/mixs
    is_a: environment field
    string_serialization: '{term}: {term}, {text}'
    slot_uri: MIXS:0000010
    multivalued: false
    alias: geo_loc_name
    owner: food-human foods
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    - built environment
    - air
    - agriculture
    range: string
    required: true
  collection_date:
    name: collection_date
    description: 'The time of sampling, either as an instance (single point in time)
      or interval. In case no exact time is available, the date/time can be right
      truncated i.e. all of these are valid times: 2008-01-23T19:23:10+00:00; 2008-01-23T19:23:10;
      2008-01-23; 2008-01; 2008; Except: 2008-01; 2008 all are ISO8601 compliant'
    title: collection date
    from_schema: http://w3id.org/mixs
    is_a: environment field
    slot_uri: MIXS:0000011
    multivalued: false
    alias: collection_date
    owner: food-human foods
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    - built environment
    - air
    - agriculture
    range: date
    required: true
  env_broad_scale:
    name: env_broad_scale
    description: 'Report the major environmental system the sample or specimen came
      from. The system(s) identified should have a coarse spatial grain, to provide
      the general environmental context of where the sampling was done (e.g. in the
      desert or a rainforest). We recommend using subclasses of EnvO’s biome class:  http://purl.obolibrary.org/obo/ENVO_00000428.
      EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS'
    title: broad-scale environmental context
    from_schema: http://w3id.org/mixs
    is_a: environment field
    string_serialization: '{termLabel} {[termID]}'
    slot_uri: MIXS:0000012
    multivalued: false
    alias: env_broad_scale
    owner: food-human foods
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    - built environment
    - air
    - agriculture
    range: string
    required: true
  env_local_scale:
    name: env_local_scale
    description: 'Report the entity or entities which are in the sample or specimen’s
      local vicinity and which you believe have significant causal influences on your
      sample or specimen. We recommend using EnvO terms which are of smaller spatial
      grain than your entry for env_broad_scale. Terms, such as anatomical sites,
      from other OBO Library ontologies which interoperate with EnvO (e.g. UBERON)
      are accepted in this field. EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS.'
    title: local environmental context
    from_schema: http://w3id.org/mixs
    is_a: environment field
    string_serialization: '{termLabel} {[termID]}'
    slot_uri: MIXS:0000013
    multivalued: false
    alias: env_local_scale
    owner: food-human foods
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    - built environment
    - air
    - agriculture
    range: string
    required: true
  env_medium:
    name: env_medium
    description: 'Report the environmental material(s) immediately surrounding the
      sample or specimen at the time of sampling. We recommend using subclasses of
      ''environmental material'' (http://purl.obolibrary.org/obo/ENVO_00010483). EnvO
      documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS
      . Terms from other OBO ontologies are permissible as long as they reference
      mass/volume nouns (e.g. air, water, blood) and not discrete, countable entities
      (e.g. a tree, a leaf, a table top).'
    title: environmental medium
    from_schema: http://w3id.org/mixs
    is_a: environment field
    string_serialization: '{termLabel} {[termID]}'
    slot_uri: MIXS:0000014
    multivalued: false
    alias: env_medium
    owner: food-human foods
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    - built environment
    - air
    - agriculture
    range: string
    required: true
  samp_collect_device:
    name: samp_collect_device
    description: The device used to collect an environmental sample. This field accepts
      terms listed under environmental sampling device (http://purl.obolibrary.org/obo/ENVO).
      This field also accepts terms listed under specimen collection device (http://purl.obolibrary.org/obo/GENEPIO_0002094).
    title: sample collection device
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{termLabel} {[termID]}|{text}'
    slot_uri: MIXS:0000002
    multivalued: false
    alias: samp_collect_device
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - agriculture
    range: string
    required: false
  organism_count:
    name: organism_count
    description: 'Total cell count of any organism (or group of organisms) per gram,
      volume or area of sample, should include name of organism followed by count.
      The method that was used for the enumeration (e.g. qPCR, atp, mpn, etc.) Should
      also be provided. (example: total prokaryotes; 3.5e7 cells per ml; qpcr)'
    title: organism count
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000103
    multivalued: true
    alias: organism_count
    owner: food-human foods
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - built environment
    - air
    - agriculture
    range: organism_count_enum
    required: false
  spikein_count:
    name: spikein_count
    description: 'Total cell count of any organism (or group of organisms) per gram,
      volume or area of sample, should include name of organism followed by count.
      The method that was used for the enumeration (e.g. qPCR, atp, mpn, etc.) should
      also be provided (example: total prokaryotes; 3.5e7 cells per ml; qPCR).'
    title: spike-in organism count
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0001335
    multivalued: false
    alias: spikein_count
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-farm environment
    - food-animal and animal feed
    range: spikein_count_enum
    required: false
  samp_stor_temp:
    name: samp_stor_temp
    description: Temperature at which sample was stored, e.g. -80 degree Celsius.
    title: sample storage temperature
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000110
    multivalued: false
    alias: samp_stor_temp
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - agriculture
    range: quantity value
    required: false
  samp_stor_dur:
    name: samp_stor_dur
    description: Duration for which the sample was stored. Indicate the duration for
      which the sample was stored written in ISO 8601 format.
    title: sample storage duration
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{duration}'
    slot_uri: MIXS:0000116
    multivalued: false
    alias: samp_stor_dur
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    range: string
    required: false
  pool_dna_extracts:
    name: pool_dna_extracts
    description: Indicate whether multiple DNA extractions were mixed. If the answer
      yes, the number of extracts that were pooled should be given
    title: pooling of DNA extracts (if done)
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{boolean};{integer}'
    slot_uri: MIXS:0000325
    multivalued: false
    alias: pool_dna_extracts
    owner: food-human foods
    domain_of:
    - soil
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    - agriculture
    range: string
    required: false
  samp_stor_loc:
    name: samp_stor_loc
    description: Location at which sample was stored, usually name of a specific freezer/room.
      Indicate the location name.
    title: sample storage location
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0000755
    multivalued: false
    alias: samp_stor_loc
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    range: string
    required: false
  genetic_mod:
    name: genetic_mod
    description: Genetic modifications of the genome of an organism, which may occur
      naturally by spontaneous mutation, or be introduced by some experimental means,
      e.g. specification of a transgene or the gene knocked-out or details of transient
      transfection
    title: genetic modification
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{PMID}|{DOI}|{URL}|{text}'
    slot_uri: MIXS:0000859
    multivalued: false
    alias: genetic_mod
    owner: food-human foods
    domain_of:
    - plant-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - agriculture
    range: string
    required: false
  perturbation:
    name: perturbation
    description: Type of perturbation, e.g. chemical administration, physical disturbance,
      etc., coupled with perturbation regimen including how many times the perturbation
      was repeated, how long each perturbation lasted, and the start and end time
      of the entire perturbation period; can include multiple perturbation types
    title: perturbation
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{Rn/start_time/end_time/duration}'
    slot_uri: MIXS:0000754
    multivalued: true
    alias: perturbation
    owner: food-human foods
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-farm environment
    - food-animal and animal feed
    - air
    - agriculture
    range: string
    required: false
  coll_site_geo_feat:
    name: coll_site_geo_feat
    description: 'Text or terms that describe the geographic feature where the food
      sample was obtained by the researcher. This field accepts selected terms listed
      under the following ontologies: anthropogenic geographic feature (http://purl.obolibrary.org/obo/ENVO_00000002),
      for example agricultural fairground [ENVO:01000986]; garden [ENVO:00000011}
      or any of its subclasses; market [ENVO:01000987]; water well [ENVO:01000002];
      or human construction (http://purl.obolibrary.org/obo/ENVO_00000070).'
    title: collection site geographic feature
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}|{termLabel} {[termID]}'
    slot_uri: MIXS:0001183
    multivalued: false
    alias: coll_site_geo_feat
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    range: string
    required: true
  food_product_type:
    name: food_product_type
    description: A food product type is a class of food products that is differentiated
      by its food composition (e.g., single- or multi-ingredient), processing and/or
      consumption characteristics. This does not include brand name products but it
      may include generic food dish categories. This field accepts terms under food
      product type (http://purl.obolibrary.org/obo/FOODON:03400361). For terms related
      to food product for an animal, consult food product for animal (http://purl.obolibrary.org/obo/FOODON_03309997).
      If the proper descriptor is not listed please use text to describe the food
      type. Multiple terms can be separated by one or more pipes.
    title: food product type
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}|{termLabel} {[termID]}'
    slot_uri: MIXS:0001184
    multivalued: true
    alias: food_product_type
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    range: string
    required: true
  IFSAC_category:
    name: IFSAC_category
    description: 'The IFSAC food categorization scheme has five distinct levels to
      which foods can be assigned, depending upon the type of food. First, foods are
      assigned to one of four food groups (aquatic animals, land animals, plants,
      and other). Food groups include increasingly specific food categories; dairy,
      eggs, meat and poultry, and game are in the land animal food group, and the
      category meat and poultry is further subdivided into more specific categories
      of meat (beef, pork, other meat) and poultry (chicken, turkey, other poultry).
      Finally, foods are differentiated by differences in food processing (such as
      pasteurized fluid dairy products, unpasteurized fluid dairy products, pasteurized
      solid and semi-solid dairy products, and unpasteurized solid and semi-solid
      dairy products. An IFSAC food category chart is available from https://www.cdc.gov/foodsafety/ifsac/projects/food-categorization-scheme.html
      PMID: 28926300.'
    title: Interagency Food Safety Analytics Collaboration (IFSAC) category
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0001179
    multivalued: true
    alias: IFSAC_category
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    range: string
    required: true
  ferm_chem_add:
    name: ferm_chem_add
    description: Any chemicals that are added to the fermentation process to achieve
      the desired final product.
    title: fermentation chemical additives
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0001185
    multivalued: true
    alias: ferm_chem_add
    owner: food-human foods
    domain_of:
    - food-human foods
    range: quantity value
    required: false
  ferm_chem_add_perc:
    name: ferm_chem_add_perc
    description: The amount of chemical added to the fermentation process.
    title: fermentation chemical additives percentage
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{float} percentage'
    slot_uri: MIXS:0001186
    multivalued: true
    alias: ferm_chem_add_perc
    owner: food-human foods
    domain_of:
    - food-human foods
    range: string
    required: false
  ferm_headspace_oxy:
    name: ferm_headspace_oxy
    description: The amount of headspace oxygen in a fermentation vessel.
    title: fermentation headspace oxygen
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{float} percentage'
    slot_uri: MIXS:0001187
    multivalued: false
    alias: ferm_headspace_oxy
    owner: food-human foods
    domain_of:
    - food-human foods
    range: string
    required: false
  ferm_medium:
    name: ferm_medium
    description: The growth medium used for the fermented food fermentation process,
      which supplies the required nutrients.  Usually this includes a carbon and nitrogen
      source, water, micronutrients and chemical additives.
    title: fermentation medium
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0001188
    multivalued: false
    alias: ferm_medium
    owner: food-human foods
    domain_of:
    - food-human foods
    range: string
    required: false
  ferm_pH:
    name: ferm_pH
    description: The pH of the fermented food fermentation process.
    title: fermentation pH
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0001189
    multivalued: false
    alias: ferm_pH
    owner: food-human foods
    domain_of:
    - food-human foods
    range: double
    required: false
  ferm_rel_humidity:
    name: ferm_rel_humidity
    description: The relative humidity of the fermented food fermentation process.
    title: fermentation relative humidity
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0001190
    multivalued: false
    alias: ferm_rel_humidity
    owner: food-human foods
    domain_of:
    - food-human foods
    range: quantity value
    required: false
  ferm_temp:
    name: ferm_temp
    description: The temperature of the fermented food fermentation process.
    title: fermentation temperature
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0001191
    multivalued: false
    alias: ferm_temp
    owner: food-human foods
    domain_of:
    - food-human foods
    range: quantity value
    required: false
  ferm_time:
    name: ferm_time
    description: The time duration of the fermented food fermentation process.
    title: fermentation time
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{duration}'
    slot_uri: MIXS:0001192
    multivalued: false
    alias: ferm_time
    owner: food-human foods
    domain_of:
    - food-human foods
    range: string
    required: false
  ferm_vessel:
    name: ferm_vessel
    description: The type of vessel used for containment of the fermentation.
    title: fermentation vessel
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0001193
    multivalued: false
    alias: ferm_vessel
    owner: food-human foods
    domain_of:
    - food-human foods
    range: string
    required: false
  bacterial_density:
    name: bacterial_density
    description: Number of bacteria in sample, as defined by bacteria density (http://purl.obolibrary.org/obo/GENEPIO_0000043).
    title: bacteria density
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0001194
    multivalued: false
    alias: bacterial_density
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    range: quantity value
    required: false
  cons_food_stor_dur:
    name: cons_food_stor_dur
    description: The storage duration of the food commodity by the consumer, prior
      to onset of illness or sample collection.  Indicate the timepoint written in
      ISO 8601 format.
    title: food stored by consumer (storage duration)
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{duration}'
    slot_uri: MIXS:0001195
    multivalued: false
    alias: cons_food_stor_dur
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-animal and animal feed
    range: string
    required: false
  cons_food_stor_temp:
    name: cons_food_stor_temp
    description: Temperature at which food commodity was stored by the consumer, prior
      to onset of illness or sample collection.
    title: food stored by consumer (storage temperature)
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{float} {unit}|{text}'
    slot_uri: MIXS:0001196
    multivalued: false
    alias: cons_food_stor_temp
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-animal and animal feed
    range: string
    required: false
  cons_purch_date:
    name: cons_purch_date
    description: The date a food product was purchased by consumer.
    title: purchase date
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0001197
    multivalued: false
    alias: cons_purch_date
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-animal and animal feed
    range: date
    required: false
  cons_qty_purchased:
    name: cons_qty_purchased
    description: The quantity of food purchased by consumer.
    title: quantity purchased
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{integer} {unit}'
    slot_uri: MIXS:0001198
    multivalued: false
    alias: cons_qty_purchased
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-animal and animal feed
    range: string
    required: false
  cult_isol_date:
    name: cult_isol_date
    description: A culture isolation date is a date-time entity marking the end of
      a process in which a sample yields a positive result for the target microbial
      analyte(s) in the form of an isolated colony or colonies.
    title: culture isolation date
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0001181
    multivalued: false
    alias: cult_isol_date
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - agriculture
    range: date
    required: false
  cult_result:
    name: cult_result
    description: Any result of a bacterial culture experiment reported as a binary
      assessment such as positive/negative, active/inactive.
    title: culture result
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0001117
    multivalued: false
    alias: cult_result
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    range: cult_result_enum
    required: false
  cult_result_org:
    name: cult_result_org
    description: Taxonomic information about the cultured organism(s).
    title: culture result organism
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{termLabel} {[termID]}|{integer}'
    slot_uri: MIXS:0001118
    multivalued: true
    alias: cult_result_org
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    range: string
    required: false
  cult_target:
    name: cult_target
    description: The target microbial analyte in terms of investigation scope. This
      field accepts terms under organism (http://purl.obolibrary.org/obo/NCIT_C14250).
      This field also accepts identification numbers from NCBI under https://www.ncbi.nlm.nih.gov/taxonomy.
    title: culture target microbial analyte
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{termLabel} {[termID]}|{integer}'
    slot_uri: MIXS:0001119
    multivalued: true
    alias: cult_target
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    range: string
    required: false
  dietary_claim_use:
    name: dietary_claim_use
    description: These descriptors are used either for foods intended for special
      dietary use as defined in 21 CFR 105 or for foods that have special characteristics
      indicated in the name or labeling. This field accepts terms listed under dietary
      claim or use (http://purl.obolibrary.org/obo/FOODON_03510023). Multiple terms
      can be separated by one or more pipes, but please consider limiting this list
      to the most prominent dietary claim or use.
    title: dietary claim or use
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}|{termLabel} {[termID]}'
    slot_uri: MIXS:0001199
    multivalued: true
    alias: dietary_claim_use
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-food production facility
    range: string
    required: false
  enrichment_protocol:
    name: enrichment_protocol
    description: The microbiological workflow or protocol followed to test for the
      presence or enumeration of the target microbial analyte(s). Please provide a
      PubMed or DOI reference for published protocols.
    title: enrichment protocol
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{PMID}|{DOI}|{URL}|{text}'
    slot_uri: MIXS:0001177
    multivalued: false
    alias: enrichment_protocol
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - agriculture
    range: string
    required: false
  food_additive:
    name: food_additive
    description: A substance or substances added to food to maintain or improve safety
      and freshness, to improve or maintain nutritional value, or improve taste, texture
      and appearance.  This field accepts terms listed under food additive (http://purl.obolibrary.org/obo/FOODON_03412972).
      Multiple terms can be separated by one or more pipes, but please consider limiting
      this list to the top 5 ingredients listed in order as on the food label.  See
      also, https://www.fda.gov/food/food-ingredients-packaging/overview-food-ingredients-additives-colors.
    title: food additive
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}|{termLabel} {[termID]}'
    slot_uri: MIXS:0001200
    multivalued: true
    alias: food_additive
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    range: string
    required: false
  food_allergen_label:
    name: food_allergen_label
    description: A label indication that the product contains a recognized allergen.
      This field accepts terms listed under dietary claim or use (http://purl.obolibrary.org/obo/FOODON_03510213).
    title: food allergen labeling
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}|{termLabel} {[termID]}'
    slot_uri: MIXS:0001201
    multivalued: true
    alias: food_allergen_label
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-food production facility
    range: string
    required: false
  food_contact_surf:
    name: food_contact_surf
    description: The specific container or coating materials in direct contact with
      the food. Multiple values can be assigned.  This field accepts terms listed
      under food contact surface (http://purl.obolibrary.org/obo/FOODON_03500010).
    title: food contact surface
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}|{termLabel} {[termID]}'
    slot_uri: MIXS:0001131
    multivalued: true
    alias: food_contact_surf
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    range: string
    required: false
  food_contain_wrap:
    name: food_contain_wrap
    description: Type of container or wrapping defined by the main container material,
      the container form, and the material of the liner lids or ends. Also type of
      container or wrapping by form; prefer description by material first, then by
      form. This field accepts terms listed under food container or wrapping (http://purl.obolibrary.org/obo/FOODON_03490100).
    title: food container or wrapping
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}|{termLabel} {[termID]}'
    slot_uri: MIXS:0001132
    multivalued: false
    alias: food_contain_wrap
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    range: string
    required: false
  food_cooking_proc:
    name: food_cooking_proc
    description: The transformation of raw food by the application of heat. This field
      accepts terms listed under food cooking (http://purl.obolibrary.org/obo/FOODON_03450002).
    title: food cooking process
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}|{termLabel} {[termID]}'
    slot_uri: MIXS:0001202
    multivalued: true
    alias: food_cooking_proc
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    range: string
    required: false
  food_dis_point:
    name: food_dis_point
    description: 'A reference to a place on the Earth, by its name or by its geographical
      location that refers to a distribution point along the food chain. This field
      accepts terms listed under geographic location (http://purl.obolibrary.org/obo/GAZ_00000448).
      Reference: Adam Diamond, James Barham. Moving Food Along the Value Chain: Innovations
      in Regional Food Distribution. U.S. Dept. of Agriculture, Agricultural Marketing
      Service. Washington, DC. March 2012. http://dx.doi.org/10.9752/MS045.03-2012.'
    title: food distribution point geographic location
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{term}: {term}, {text}'
    slot_uri: MIXS:0001203
    multivalued: true
    alias: food_dis_point
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    range: string
    required: false
  food_ingredient:
    name: food_ingredient
    description: In this field, please list individual ingredients for multi-component
      food [FOODON:00002501] and simple foods that is not captured in food_type.  Please
      use terms that are present in FoodOn.  Multiple terms can be separated by one
      or more pipes |, but please consider limiting this list to the top 5 ingredients
      listed in order as on the food label.  See also, https://www.fda.gov/food/food-ingredients-packaging/overview-food-ingredients-additives-colors.
    title: food ingredient
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}|{termLabel} {[termID]}'
    slot_uri: MIXS:0001205
    multivalued: true
    alias: food_ingredient
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    range: string
    required: false
  food_name_status:
    name: food_name_status
    description: A datum indicating that use of a food product name is regulated in
      some legal jurisdiction. This field accepts terms listed under food product
      name legal status (http://purl.obolibrary.org/obo/FOODON_03530087).
    title: food product name legal status
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{termLabel} {[termID]}'
    slot_uri: MIXS:0001206
    multivalued: false
    alias: food_name_status
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-food production facility
    range: string
    required: false
  food_origin:
    name: food_origin
    description: A reference to a place on the Earth, by its name or by its geographical
      location that describes the origin of the food commodity, either in terms of
      its cultivation or production. This field accepts terms listed under geographic
      location (http://purl.obolibrary.org/obo/GAZ_00000448).
    title: food product origin geographic location
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{term}: {term}, {text}'
    slot_uri: MIXS:0001207
    multivalued: false
    alias: food_origin
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    range: string
    required: false
  food_pack_capacity:
    name: food_pack_capacity
    description: The maximum number of product units within a package
    title: food package capacity
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0001208
    multivalued: false
    alias: food_pack_capacity
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    range: quantity value
    required: false
  food_pack_integrity:
    name: food_pack_integrity
    description: A term label and term id to describe the state of the packing material
      and text to explain the exact condition.  This field accepts terms listed under
      food packing medium integrity (http://purl.obolibrary.org/obo/FOODON_03530218).
    title: food packing medium integrity
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}|{termLabel} {[termID]}'
    slot_uri: MIXS:0001209
    multivalued: true
    alias: food_pack_integrity
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    range: string
    required: false
  food_pack_medium:
    name: food_pack_medium
    description: The medium in which the food is packed for preservation and handling
      or the medium surrounding homemade foods, e.g., peaches cooked in sugar syrup.
      The packing medium may provide a controlled environment for the food. It may
      also serve to improve palatability and consumer appeal.  This includes edible
      packing media (e.g. fruit juice), gas other than air (e.g. carbon dioxide),
      vacuum packed, or packed with aerosol propellant. This field accepts terms under
      food packing medium (http://purl.obolibrary.org/obo/FOODON_03480020). Multiple
      terms may apply and can be separated by pipes.
    title: food packing medium
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}|{termLabel} {[termID]}'
    slot_uri: MIXS:0001134
    multivalued: true
    alias: food_pack_medium
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    range: string
    required: false
  food_preserv_proc:
    name: food_preserv_proc
    description: The methods contributing to the prevention or retardation of microbial,
      enzymatic or oxidative spoilage and thus to the extension of shelf life. This
      field accepts terms listed under food preservation process (http://purl.obolibrary.org/obo/FOODON_03470107).
    title: food preservation process
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}|{termLabel} {[termID]}'
    slot_uri: MIXS:0001135
    multivalued: true
    alias: food_preserv_proc
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    range: string
    required: false
  food_prior_contact:
    name: food_prior_contact
    description: The material the food contacted (e.g., was processed in) prior to
      packaging. This field accepts terms listed under material of contact prior to
      food packaging (http://purl.obolibrary.org/obo/FOODON_03530077). If the proper
      descriptor is not listed please use text to describe the material of contact
      prior to food packaging.
    title: material of contact prior to food packaging
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}|{termLabel} {[termID]}'
    slot_uri: MIXS:0001210
    multivalued: true
    alias: food_prior_contact
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    range: string
    required: false
  food_prod:
    name: food_prod
    description: Descriptors of the food production system or of the agricultural
      environment and growing conditions related to the farm production system, such
      as wild caught, organic, free-range, industrial, dairy, beef,  domestic or cultivated
      food production. This field accepts terms listed under food production (http://purl.obolibrary.org/obo/FOODON_03530206).
      Multiple terms may apply and can be separated by pipes.
    title: food production system characteristics
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{termLabel} {[termID]}'
    slot_uri: MIXS:0001211
    multivalued: true
    alias: food_prod
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    - agriculture
    range: string
    required: false
  food_prod_synonym:
    name: food_prod_synonym
    description: Other names by which the food product is known by (e.g., regional
      or non-English names).
    title: food product synonym
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0001212
    multivalued: true
    alias: food_prod_synonym
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    range: string
    required: false
  food_product_qual:
    name: food_product_qual
    description: Descriptors for describing food visually or via other senses, which
      is useful for tasks like food inspection where little prior knowledge of how
      the food came to be is available. Some terms like "food (frozen)" are both a
      quality descriptor and the output of a process. This field accepts terms listed
      under food product by quality (http://purl.obolibrary.org/obo/FOODON_00002454).
    title: food product by quality
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{termLabel} {[termID]}'
    slot_uri: MIXS:0001213
    multivalued: false
    alias: food_product_qual
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    range: string
    required: false
  food_quality_date:
    name: food_quality_date
    description: The date recommended for the use of the product while at peak quality,
      this date is not a reflection of safety unless used on infant formula this date
      is not a reflection of safety and is typically labeled on a food product as
      "best if used by," best by," "use by," or "freeze by."
    title: food quality date
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0001178
    multivalued: false
    alias: food_quality_date
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    range: string
    required: false
    pattern: ^(best by|best if used by|freeze by||use by);(19|20)\d\d-(0[1-9]|1[012])-(0[1-9]|[12][0-9]|3[01])$
  food_source:
    name: food_source
    description: Type of plant or animal from which the food product or its major
      ingredient is derived or a chemical food source [FDA CFSAN 1995].
    title: food source
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{termLabel} {[termID]}'
    slot_uri: MIXS:0001139
    multivalued: false
    alias: food_source
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    range: string
    required: false
  food_trace_list:
    name: food_trace_list
    description: The FDA is proposing to establish additional traceability recordkeeping
      requirements (beyond what is already required in existing regulations) for persons
      who manufacture, process, pack, or hold foods the Agency has designated for
      inclusion on the Food Traceability List. The Food Traceability List (FTL) identifies
      the foods for which the additional traceability records described in the proposed
      rule would be required. The term “Food Traceability List” (FTL) refers not only
      to the foods specifically listed (https://www.fda.gov/media/142303/download),
      but also to any foods that contain listed foods as ingredients.
    title: food traceability list category
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0001214
    multivalued: false
    alias: food_trace_list
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    range: food_trace_list_enum
    required: false
  food_trav_mode:
    name: food_trav_mode
    description: A descriptor for the method of movement of food commodity along the
      food distribution system.  This field accepts terms listed under travel mode
      (http://purl.obolibrary.org/obo/GENEPIO_0001064). If the proper descrptor is
      not listed please use text to describe the mode of travel. Multiple terms can
      be separated by one or more pipes.
    title: food shipping transportation method
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{termLabel} {[termID]}'
    slot_uri: MIXS:0001137
    multivalued: true
    alias: food_trav_mode
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - agriculture
    range: string
    required: false
  food_trav_vehic:
    name: food_trav_vehic
    description: A descriptor for the mobile machine which is used to transport food
      commodities along the food distribution system.  This field accepts terms listed
      under vehicle (http://purl.obolibrary.org/obo/ENVO_01000604). If the proper
      descrptor is not listed please use text to describe the mode of travel. Multiple
      terms can be separated by one or more pipes.
    title: Food shipping transportation vehicle
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}|{termLabel} {[termID]}'
    slot_uri: MIXS:0001138
    multivalued: true
    alias: food_trav_vehic
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - agriculture
    range: string
    required: false
  food_treat_proc:
    name: food_treat_proc
    description: Used to specifically characterize a food product based on the treatment
      or processes applied to the product or any indexed ingredient. The processes
      include adding, substituting or removing components or modifying the food or
      component, e.g., through fermentation. Multiple values can be assigned. This
      fields accepts terms listed under food treatment process (http://purl.obolibrary.org/obo/FOODON_03460111).
    title: food treatment process
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}|{termLabel} {[termID]}'
    slot_uri: MIXS:0001140
    multivalued: true
    alias: food_treat_proc
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    range: string
    required: false
  HACCP_term:
    name: HACCP_term
    description: Hazard Analysis Critical Control Points (HACCP) food safety terms;
      This field accepts terms listed under HACCP guide food safety term (http://purl.obolibrary.org/obo/FOODON_03530221).
    title: Hazard Analysis Critical Control Points (HACCP) guide food safety term
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{termLabel} {[termID]}'
    slot_uri: MIXS:0001215
    multivalued: true
    alias: HACCP_term
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    range: string
    required: false
  intended_consumer:
    name: intended_consumer
    description: Food consumer type, human or animal, for which the food product is
      produced and marketed. This field accepts terms listed under food consumer group
      (http://purl.obolibrary.org/obo/FOODON_03510136) or NCBI taxid.
    title: intended consumer
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{integer}|{termLabel} {[termID]}'
    slot_uri: MIXS:0001144
    multivalued: true
    alias: intended_consumer
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    range: string
    required: false
  library_prep_kit:
    name: library_prep_kit
    description: Packaged kits (containing adapters, indexes, enzymes, buffers etc.),
      tailored for specific sequencing workflows, which allow the simplified preparation
      of sequencing-ready libraries for small genomes, amplicons, and plasmids.
    title: library preparation kit
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0001145
    multivalued: false
    alias: library_prep_kit
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - agriculture
    range: string
    required: false
  lot_number:
    name: lot_number
    description: 'A distinctive alpha-numeric identification code assigned by the
      manufacturer or distributor to a specific quantity of manufactured material
      or product within a batch. Synonym: Batch Number.  The submitter should provide
      lot number of the item followed by the item name for which the lot number was
      provided.'
    title: lot number
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{integer}, {text}'
    slot_uri: MIXS:0001147
    multivalued: true
    alias: lot_number
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - agriculture
    range: string
    required: false
  microb_cult_med:
    name: microb_cult_med
    description: A culture medium used to select for, grow, and maintain prokaryotic
      microorganisms. Can be in either liquid (broth) or solidified (e.g. with agar)
      forms. This field accepts terms listed under microbiological culture medium
      (http://purl.obolibrary.org/obo/MICRO_0000067). If the proper descriptor is
      not listed please use text to describe the culture medium.
    title: microbiological culture medium
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}|{termLabel} {[termID]}'
    slot_uri: MIXS:0001216
    multivalued: false
    alias: microb_cult_med
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    range: string
    required: false
  microb_start:
    name: microb_start
    description: Any type of microorganisms used in food production.  This field accepts
      terms listed under live organisms for food production (http://purl.obolibrary.org/obo/FOODON_0344453).
    title: microbial starter
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{term label} {[termID]}|{text}'
    slot_uri: MIXS:0001217
    multivalued: false
    alias: microb_start
    owner: food-human foods
    domain_of:
    - food-human foods
    range: string
    required: false
  microb_start_count:
    name: microb_start_count
    description: 'Total cell count of starter culture per gram, volume or area of
      sample and the method that was used for the enumeration (e.g. qPCR, atp, mpn,
      etc.) should also be provided. (example : total prokaryotes; 3.5e7 cells per
      ml; qPCR).'
    title: microbial starter organism count
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0001218
    multivalued: false
    alias: microb_start_count
    owner: food-human foods
    domain_of:
    - food-human foods
    range: microb_start_count_enum
    required: false
  microb_start_inoc:
    name: microb_start_inoc
    description: The amount of starter culture used to inoculate a new batch.
    title: microbial starter inoculation
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0001219
    multivalued: false
    alias: microb_start_inoc
    owner: food-human foods
    domain_of:
    - food-human foods
    range: quantity value
    required: false
  microb_start_prep:
    name: microb_start_prep
    description: Information about the protocol or method used to prepare the starter
      inoculum.
    title: microbial starter preparation
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0001220
    multivalued: false
    alias: microb_start_prep
    owner: food-human foods
    domain_of:
    - food-human foods
    range: string
    required: false
  microb_start_source:
    name: microb_start_source
    description: The source from which the microbial starter culture was sourced.  If
      commercially supplied, list supplier.
    title: microbial starter source
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0001221
    multivalued: false
    alias: microb_start_source
    owner: food-human foods
    domain_of:
    - food-human foods
    range: string
    required: false
  microb_start_taxID:
    name: microb_start_taxID
    description: Please include Genus species and strain ID, if known of microorganisms
      used in food production. For complex communities, pipes can be used to separate
      two or more microbes.
    title: microbial starter NCBI taxonomy ID
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{termLabel} {[termID]}|{integer}'
    slot_uri: MIXS:0001222
    multivalued: false
    alias: microb_start_taxID
    owner: food-human foods
    domain_of:
    - food-human foods
    range: string
    required: false
  nucl_acid_ext_kit:
    name: nucl_acid_ext_kit
    description: The name of the extraction kit used to recover the nucleic acid fraction
      of an input material is performed.
    title: nucleic acid extraction kit
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0001223
    multivalued: true
    alias: nucl_acid_ext_kit
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-food production facility
    range: string
    required: false
  num_samp_collect:
    name: num_samp_collect
    description: The number of samples collected during the current sampling event.
    title: number of samples collected
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0001224
    multivalued: false
    alias: num_samp_collect
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-food production facility
    range: quantity value
    required: false
  part_plant_animal:
    name: part_plant_animal
    description: The anatomical part of the organism being involved in food production
      or consumption; e.g., a carrot is the root of the plant (root vegetable). This
      field accepts terms listed under part of plant or animal (http://purl.obolibrary.org/obo/FOODON_03420116).
    title: part of plant or animal
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}|{termLabel} {[termID]}'
    slot_uri: MIXS:0001149
    multivalued: true
    alias: part_plant_animal
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    range: string
    required: false
  repository_name:
    name: repository_name
    description: The name of the institution where the sample or DNA extract is held
      or "sample not available" if the sample was used in its entirety for analysis
      or otherwise not retained.
    title: repository name
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0001152
    multivalued: true
    alias: repository_name
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    range: string
    required: false
  sample_collec_method:
    name: sample_collec_method
    description: The method employed for collecting the sample.
    title: sample collection method
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{PMID}|{DOI}|{URL}|{text}'
    slot_uri: MIXS:0001225
    multivalued: false
    alias: sample_collec_method
    owner: food-human foods
    domain_of:
    - food-human foods
    range: string
    required: false
  samp_pooling:
    name: samp_pooling
    description: Physical combination of several instances of like material, e.g.
      RNA extracted from samples or dishes of cell cultures into one big aliquot of
      cells. Please provide a short description of the samples that were pooled.
    title: sample pooling
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0001153
    multivalued: true
    alias: samp_pooling
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - agriculture
    range: string
    required: false
  samp_rep_biol:
    name: samp_rep_biol
    description: Measurements of biologically distinct samples that show biological
      variation.
    title: biological sample replicate
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0001226
    multivalued: false
    alias: samp_rep_biol
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    range: quantity value
    required: false
  samp_rep_tech:
    name: samp_rep_tech
    description: Repeated measurements of the same sample that show independent measures
      of the noise associated with the equipment and the protocols.
    title: technical sample replicate
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0001227
    multivalued: false
    alias: samp_rep_tech
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    range: quantity value
    required: false
  samp_source_mat_cat:
    name: samp_source_mat_cat
    description: This is the scientific role or category that the subject organism
      or material has with respect to an investigation.  This field accepts terms
      listed under specimen source material category (http://purl.obolibrary.org/obo/GENEPIO_0001237
      or http://purl.obolibrary.org/obo/OBI_0100051).
    title: sample source material category
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{termLabel} {[termID]}'
    slot_uri: MIXS:0001154
    multivalued: false
    alias: samp_source_mat_cat
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    range: string
    required: false
  samp_stor_device:
    name: samp_stor_device
    description: The container used to store the  sample. This field accepts terms
      listed under container (http://purl.obolibrary.org/obo/NCIT_C43186). If the
      proper descriptor is not listed please use text to describe the storage device.
    title: sample storage device
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}|{termLabel} {[termID]}'
    slot_uri: MIXS:0001228
    multivalued: false
    alias: samp_stor_device
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    range: string
    required: false
  samp_stor_media:
    name: samp_stor_media
    description: The liquid that is added to the sample collection device prior to
      sampling. If the sample is pre-hydrated, indicate the liquid media the sample
      is pre-hydrated with for storage purposes. This field accepts terms listed under
      microbiological culture medium (http://purl.obolibrary.org/obo/MICRO_0000067).
      If the proper descriptor is not listed please use text to describe the sample
      storage media.
    title: sample storage media
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}|{termLabel} {[termID]}'
    slot_uri: MIXS:0001229
    multivalued: false
    alias: samp_stor_media
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    range: string
    required: false
  samp_transport_cont:
    name: samp_transport_cont
    description: Conatiner in which the sample was stored during transport. Indicate
      the location name.
    title: sample transport  container
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0001230
    multivalued: false
    alias: samp_transport_cont
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    range: samp_transport_cont_enum
    required: false
  samp_transport_dur:
    name: samp_transport_dur
    description: The duration of time from when the sample was collected until processed.
      Indicate the duration for which the sample was stored written in ISO 8601 format.
    title: sample transport duration
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0001231
    multivalued: false
    alias: samp_transport_dur
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    range: quantity value
    required: false
  samp_transport_temp:
    name: samp_transport_temp
    description: Temperature at which sample was transported, e.g. -20 or 4 degree
      Celsius.
    title: sample transport temperature
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{float} {unit} {text}'
    slot_uri: MIXS:0001232
    multivalued: false
    alias: samp_transport_temp
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    range: string
    required: false
  samp_purpose:
    name: samp_purpose
    description: The reason that the sample was collected.
    title: purpose of sampling
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0001151
    multivalued: false
    alias: samp_purpose
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    range: string
    required: false
  sequencing_kit:
    name: sequencing_kit
    description: Pre-filled, ready-to-use reagent cartridges. Used to produce improved
      chemistry, cluster density and read length as well as improve quality (Q) scores.
      Reagent components are encoded to interact with the sequencing system to validate
      compatibility with user-defined applications. Indicate name of the sequencing
      kit.
    title: sequencing kit
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0001155
    multivalued: false
    alias: sequencing_kit
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    range: string
    required: false
  sequencing_location:
    name: sequencing_location
    description: The location the sequencing run was performed. Indicate the name
      of the lab or core facility where samples were sequenced.
    title: sequencing location
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0001156
    multivalued: false
    alias: sequencing_location
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - agriculture
    range: string
    required: false
  serovar_or_serotype:
    name: serovar_or_serotype
    description: A characterization of a cell or microorganism based on the antigenic
      properties of the molecules on its surface. Indicate the name of a serovar or
      serotype of interest. This field accepts terms under organism (http://purl.obolibrary.org/obo/NCIT_C14250).
      This field also accepts identification numbers from NCBI under https://www.ncbi.nlm.nih.gov/taxonomy.
    title: serovar or serotype
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{termLabel} {[termID]}|{integer}'
    slot_uri: MIXS:0001157
    multivalued: true
    alias: serovar_or_serotype
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-farm environment
    - food-animal and animal feed
    range: string
    required: false
  spikein_AMR:
    name: spikein_AMR
    description: Qualitative description of a microbial response to antimicrobial
      agents. Bacteria may be susceptible or resistant to a broad range of antibiotic
      drugs or drug classes, with several intermediate states or phases. This field
      accepts terms under antimicrobial phenotype (http://purl.obolibrary.org/obo/ARO_3004299).
    title: antimicrobial phenotype of spike-in bacteria
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{float} {unit};{termLabel} {[termID]}'
    slot_uri: MIXS:0001235
    multivalued: true
    alias: spikein_AMR
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-animal and animal feed
    range: string
    required: false
  spikein_antibiotic:
    name: spikein_antibiotic
    description: Antimicrobials used in research study to assess effects of exposure
      on microbiome of a specific site.  Please list antimicrobial, common name and/or
      class and concentration used for spike-in.
    title: spike-in with antibiotics
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text} {integer}'
    slot_uri: MIXS:0001171
    multivalued: true
    alias: spikein_antibiotic
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-farm environment
    - food-animal and animal feed
    range: string
    required: false
  spikein_growth_med:
    name: spikein_growth_med
    description: A liquid or gel containing nutrients, salts, and other factors formulated
      to support the growth of microorganisms, cells, or plants (National Cancer Institute
      Thesaurus).  A growth medium is a culture medium which has the disposition to
      encourage growth of particular bacteria to the exclusion of others in the same
      growth environment.  In this case, list the culture medium used to propagate
      the spike-in bacteria during preparation of spike-in inoculum. This field accepts
      terms listed under microbiological culture medium (http://purl.obolibrary.org/obo/MICRO_0000067).
      If the proper descriptor is not listed please use text to describe the spike
      in growth media.
    title: spike-in growth medium
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}|{termLabel} {[termID]}'
    slot_uri: MIXS:0001169
    multivalued: true
    alias: spikein_growth_med
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-farm environment
    - food-animal and animal feed
    range: string
    required: false
  spikein_metal:
    name: spikein_metal
    description: Heavy metals used in research study to assess effects of exposure
      on microbiome of a specific site.  Please list heavy metals and concentration
      used for spike-in.
    title: spike-in with heavy metals
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text} {integer}'
    slot_uri: MIXS:0001172
    multivalued: true
    alias: spikein_metal
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-farm environment
    - food-animal and animal feed
    range: string
    required: false
  spikein_org:
    name: spikein_org
    description: Taxonomic information about the spike-in organism(s). This field
      accepts terms under organism (http://purl.obolibrary.org/obo/NCIT_C14250). This
      field also accepts identification numbers from NCBI under https://www.ncbi.nlm.nih.gov/taxonomy.
      Multiple terms can be separated by pipes.
    title: spike in organism
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{termLabel} {[termID]}|{integer}'
    slot_uri: MIXS:0001167
    multivalued: true
    alias: spikein_org
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-farm environment
    - food-animal and animal feed
    range: string
    required: false
  spikein_serovar:
    name: spikein_serovar
    description: Taxonomic information about the spike-in organism(s) at the serovar
      or serotype level. This field accepts terms under organism (http://purl.obolibrary.org/obo/NCIT_C14250).
      This field also accepts identification numbers from NCBI under https://www.ncbi.nlm.nih.gov/taxonomy.
      Multiple terms can be separated by pipes.
    title: spike-in bacterial serovar or serotype
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{termLabel} {[termID]}|{integer}'
    slot_uri: MIXS:0001168
    multivalued: true
    alias: spikein_serovar
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-farm environment
    - food-animal and animal feed
    range: string
    required: false
  spikein_strain:
    name: spikein_strain
    description: Taxonomic information about the spike-in organism(s) at the strain
      level. This field accepts terms under organism (http://purl.obolibrary.org/obo/NCIT_C14250).
      This field also accepts identification numbers from NCBI under https://www.ncbi.nlm.nih.gov/taxonomy.
      Multiple terms can be separated by pipes.
    title: spike-in microbial strain
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{termLabel} {[termID]}|{integer}'
    slot_uri: MIXS:0001170
    multivalued: true
    alias: spikein_strain
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-farm environment
    - food-animal and animal feed
    - agriculture
    range: string
    required: false
  study_design:
    name: study_design
    description: A plan specification comprised of protocols (which may specify how
      and what kinds of data will be gathered) that are executed as part of an investigation
      and is realized during a study design execution. This field accepts terms under
      study design (http://purl.obolibrary.org/obo/OBI_0500000). If the proper descriptor
      is not listed please use text to describe the study design. Multiple terms can
      be separated by pipes.
    title: study design
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}|{termLabel} {[termID]}'
    slot_uri: MIXS:0001236
    multivalued: true
    alias: study_design
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    range: string
    required: false
  study_inc_dur:
    name: study_inc_dur
    description: Sample incubation duration if unpublished or unvalidated method is
      used. Indicate the timepoint written in ISO 8601 format.
    title: study incubation duration
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0001237
    multivalued: false
    alias: study_inc_dur
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    range: quantity value
    required: false
  study_inc_temp:
    name: study_inc_temp
    description: Sample incubation temperature if unpublished or unvalidated method
      is used.
    title: study incubation temperature
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0001238
    multivalued: false
    alias: study_inc_temp
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    range: quantity value
    required: false
  study_timecourse:
    name: study_timecourse
    description: For time-course research studies involving samples of the food commodity,
      indicate the total duration of the time-course study.
    title: time-course duration
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0001239
    multivalued: false
    alias: study_timecourse
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    range: quantity value
    required: false
  study_tmnt:
    name: study_tmnt
    description: A process in which the act is intended to modify or alter some other
      material entity.  From the study design, each treatment is comprised of one
      level of one or multiple factors. This field accepts terms listed under treatment
      (http://purl.obolibrary.org/obo/MCO_0000866). If the proper descriptor is not
      listed please use text to describe the study treatment. Multiple terms can be
      separated by one or more pipes.
    title: study treatment
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}|{termLabel} {[termID]}'
    slot_uri: MIXS:0001240
    multivalued: true
    alias: study_tmnt
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-food production facility
    - food-animal and animal feed
    range: string
    required: false
  timepoint:
    name: timepoint
    description: Time point at which a sample or observation is made or taken from
      a biomaterial as measured from some reference point. Indicate the timepoint
      written in ISO 8601 format.
    title: timepoint
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0001173
    multivalued: false
    alias: timepoint
    owner: food-human foods
    domain_of:
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    range: double
    required: false
  misc_param:
    name: misc_param
    description: Any other measurement performed or parameter collected, that is not
      listed here
    title: miscellaneous parameter
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{float} {unit}'
    slot_uri: MIXS:0000752
    multivalued: true
    alias: misc_param
    owner: food-human foods
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - air
    - agriculture
    range: string
    required: false