Class: HydrocarbonResources-cores
hydrocarbon resources-cores
URI: MIXS:HydrocarbonResources-cores
Inheritance
- HydrocarbonResources-cores
- HydrocarbonResources-coresMIGSEukaryote [ MIGSEukaryote]
- HydrocarbonResources-coresMIGSBacteria [ MIGSBacteria]
- HydrocarbonResources-coresMIGSPlant [ MIGSPlant]
- HydrocarbonResources-coresMIGSVirus [ MIGSVirus]
- HydrocarbonResources-coresMIGSOrg [ MIGSOrg]
- HydrocarbonResources-coresMIMS [ MIMS]
- HydrocarbonResources-coresMIMARKSSpecimen [ MIMARKSSpecimen]
- HydrocarbonResources-coresMIMARKSSurvey [ MIMARKSSurvey]
- HydrocarbonResources-coresMISAG [ MISAG]
- HydrocarbonResources-coresMIMAG [ MIMAG]
- HydrocarbonResources-coresMIUVIG [ MIUVIG]
Slots
Name | Cardinality and Range | Description | Inheritance |
---|---|---|---|
lat_lon | 0..1 String |
The geographical origin of the sample as defined by latitude and longitude | direct |
depth | 0..1 QuantityValue |
The vertical distance below local surface, e | direct |
alt | 0..1 QuantityValue |
Altitude is a term used to identify heights of objects such as airplanes, spa... | direct |
elev | 0..1 QuantityValue |
Elevation of the sampling site is its height above a fixed reference point, m... | direct |
temp | 0..1 QuantityValue |
Temperature of the sample at the time of sampling | direct |
geo_loc_name | 0..1 String |
The geographical origin of the sample as defined by the country or sea name f... | direct |
collection_date | 0..1 Date |
The time of sampling, either as an instance (single point in time) or interva... | direct |
env_broad_scale | 0..1 String |
Report the major environmental system the sample or specimen came from | direct |
env_local_scale | 0..1 String |
Report the entity or entities which are in the sample or specimen’s local vic... | direct |
env_medium | 0..1 String |
Report the environmental material(s) immediately surrounding the sample or sp... | direct |
hcr | 0..1 HcrEnum |
Main Hydrocarbon Resource type | direct |
hc_produced | 0..1 HcProducedEnum |
Main hydrocarbon type produced from resource (i | direct |
basin | 0..1 String |
Name of the basin (e | direct |
field | 0..1 String |
Name of the hydrocarbon field (e | direct |
reservoir | 0..1 String |
Name of the reservoir (e | direct |
hcr_temp | 0..1 String |
Original temperature of the hydrocarbon resource | direct |
tvdss_of_hcr_temp | 0..1 QuantityValue |
True vertical depth subsea (TVDSS) of the hydrocarbon resource where the orig... | direct |
hcr_pressure | 0..1 String |
Original pressure of the hydrocarbon resource | direct |
tvdss_of_hcr_press | 0..1 QuantityValue |
True vertical depth subsea (TVDSS) of the hydrocarbon resource where the orig... | direct |
permeability | 0..1 String |
Measure of the ability of a hydrocarbon resource to allow fluids to pass thro... | direct |
porosity | 0..1 String |
Porosity of deposited sediment is volume of voids divided by the total volume... | direct |
lithology | 0..1 LithologyEnum |
Hydrocarbon resource main lithology (Additional information: http://petrowiki | direct |
depos_env | 0..1 DeposEnvEnum |
Main depositional environment (https://en | direct |
hcr_geol_age | 0..1 HcrGeolAgeEnum |
Geological age of hydrocarbon resource (Additional info: https://en | direct |
owc_tvdss | 0..1 QuantityValue |
Depth of the original oil water contact (OWC) zone (average) (m TVDSS) | direct |
hcr_fw_salinity | 0..1 QuantityValue |
Original formation water salinity (prior to secondary recovery e | direct |
sulfate_fw | 0..1 QuantityValue |
Original sulfate concentration in the hydrocarbon resource | direct |
vfa_fw | 0..1 QuantityValue |
Original volatile fatty acid concentration in the hydrocarbon resource | direct |
sr_kerog_type | 0..1 SrKerogTypeEnum |
Origin of kerogen | direct |
sr_lithology | 0..1 SrLithologyEnum |
Lithology of source rock (https://en | direct |
sr_dep_env | 0..1 SrDepEnvEnum |
Source rock depositional environment (https://en | direct |
sr_geol_age | 0..1 SrGeolAgeEnum |
Geological age of source rock (Additional info: https://en | direct |
samp_well_name | 0..1 String |
Name of the well (e | direct |
win | 0..1 String |
A unique identifier of a well or wellbore | direct |
samp_type | 0..1 String |
The type of material from which the sample was obtained | direct |
samp_subtype | 0..1 SampSubtypeEnum |
Name of sample sub-type | direct |
pressure | 0..1 QuantityValue |
Pressure to which the sample is subject to, in atmospheres | direct |
samp_tvdss | 0..1 String |
Depth of the sample i | direct |
samp_md | 0..1 SampMdEnum |
In non deviated well, measured depth is equal to the true vertical depth, TVD... | direct |
oxy_stat_samp | 0..1 OxyStatSampEnum |
Oxygenation status of sample | direct |
samp_transport_cond | 0..1 String |
Sample transport duration (in days or hrs) and temperature the sample was exp... | direct |
samp_store_temp | 0..1 QuantityValue |
Temperature at which sample was stored, e | direct |
samp_store_dur | 0..1 String |
Duration for which the sample was stored | direct |
samp_store_loc | 0..1 String |
Location at which sample was stored, usually name of a specific freezer/room | direct |
organism_count | 0..* OrganismCountEnum |
Total cell count of any organism (or group of organisms) per gram, volume or ... | direct |
org_count_qpcr_info | 0..1 String |
If qpcr was used for the cell count, the target gene name, the primer sequenc... | direct |
ph | 0..1 Double |
Ph measurement of the sample, or liquid portion of sample, or aqueous phase o... | direct |
salinity | 0..1 QuantityValue |
The total concentration of all dissolved salts in a liquid or solid sample | direct |
alkalinity | 0..1 QuantityValue |
Alkalinity, the ability of a solution to neutralize acids to the equivalence ... | direct |
alkalinity_method | 0..1 String |
Method used for alkalinity measurement | direct |
sulfate | 0..1 QuantityValue |
Concentration of sulfate in the sample | direct |
sulfide | 0..1 QuantityValue |
Concentration of sulfide in the sample | direct |
tot_sulfur | 0..1 QuantityValue |
Concentration of total sulfur in the sample | direct |
nitrate | 0..1 QuantityValue |
Concentration of nitrate in the sample | direct |
nitrite | 0..1 QuantityValue |
Concentration of nitrite in the sample | direct |
ammonium | 0..1 QuantityValue |
Concentration of ammonium in the sample | direct |
tot_nitro | 0..1 QuantityValue |
Total nitrogen concentration of water samples, calculated by: total nitrogen ... | direct |
diss_iron | 0..1 QuantityValue |
Concentration of dissolved iron in the sample | direct |
sodium | 0..1 QuantityValue |
Sodium concentration in the sample | direct |
chloride | 0..1 QuantityValue |
Concentration of chloride in the sample | direct |
potassium | 0..1 QuantityValue |
Concentration of potassium in the sample | direct |
magnesium | 0..1 QuantityValue |
Concentration of magnesium in the sample | direct |
calcium | 0..1 QuantityValue |
Concentration of calcium in the sample | direct |
tot_iron | 0..1 QuantityValue |
Concentration of total iron in the sample | direct |
diss_org_carb | 0..1 QuantityValue |
Concentration of dissolved organic carbon in the sample, liquid portion of th... | direct |
diss_inorg_carb | 0..1 QuantityValue |
Dissolved inorganic carbon concentration in the sample, typically measured af... | direct |
diss_inorg_phosp | 0..1 QuantityValue |
Concentration of dissolved inorganic phosphorus in the sample | direct |
tot_phosp | 0..1 QuantityValue |
Total phosphorus concentration in the sample, calculated by: total phosphorus... | direct |
suspend_solids | 0..* String |
Concentration of substances including a wide variety of material, such as sil... | direct |
density | 0..1 QuantityValue |
Density of the sample, which is its mass per unit volume (aka volumetric mass... | direct |
diss_carb_dioxide | 0..1 QuantityValue |
Concentration of dissolved carbon dioxide in the sample or liquid portion of ... | direct |
diss_oxygen_fluid | 0..1 QuantityValue |
Concentration of dissolved oxygen in the oil field produced fluids as it cont... | direct |
vfa | 0..1 QuantityValue |
Concentration of Volatile Fatty Acids in the sample | direct |
benzene | 0..1 QuantityValue |
Concentration of benzene in the sample | direct |
toluene | 0..1 QuantityValue |
Concentration of toluene in the sample | direct |
ethylbenzene | 0..1 QuantityValue |
Concentration of ethylbenzene in the sample | direct |
xylene | 0..1 QuantityValue |
Concentration of xylene in the sample | direct |
api | 0..1 QuantityValue |
API gravity is a measure of how heavy or light a petroleum liquid is compared... | direct |
tan | 0..1 QuantityValue |
Total Acid Number (TAN) is a measurement of acidity that is determined by th... | direct |
viscosity | 0..1 String |
A measure of oil's resistance to gradual deformation by shear stress or t... | direct |
pour_point | 0..1 QuantityValue |
Temperature at which a liquid becomes semi solid and loses its flow character... | direct |
saturates_pc | 0..1 String |
Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis method that d... | direct |
aromatics_pc | 0..1 String |
Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis method that d... | direct |
resins_pc | 0..1 String |
Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis method that d... | direct |
asphaltenes_pc | 0..1 String |
Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis method that d... | direct |
misc_param | 0..* String |
Any other measurement performed or parameter collected, that is not listed he... | direct |
additional_info | 0..1 String |
Information that doesn't fit anywhere else | direct |
Identifier and Mapping Information
Schema Source
- from schema: http://w3id.org/mixs
Mappings
Mapping Type | Mapped Value |
---|---|
self | MIXS:HydrocarbonResources-cores |
native | MIXS:HydrocarbonResources-cores |
LinkML Source
Direct
name: hydrocarbon resources-cores
description: hydrocarbon resources-cores
from_schema: http://w3id.org/mixs
slots:
- lat_lon
- depth
- alt
- elev
- temp
- geo_loc_name
- collection_date
- env_broad_scale
- env_local_scale
- env_medium
- hcr
- hc_produced
- basin
- field
- reservoir
- hcr_temp
- tvdss_of_hcr_temp
- hcr_pressure
- tvdss_of_hcr_press
- permeability
- porosity
- lithology
- depos_env
- hcr_geol_age
- owc_tvdss
- hcr_fw_salinity
- sulfate_fw
- vfa_fw
- sr_kerog_type
- sr_lithology
- sr_dep_env
- sr_geol_age
- samp_well_name
- win
- samp_type
- samp_subtype
- pressure
- samp_tvdss
- samp_md
- oxy_stat_samp
- samp_transport_cond
- samp_store_temp
- samp_store_dur
- samp_store_loc
- organism_count
- org_count_qpcr_info
- ph
- salinity
- alkalinity
- alkalinity_method
- sulfate
- sulfide
- tot_sulfur
- nitrate
- nitrite
- ammonium
- tot_nitro
- diss_iron
- sodium
- chloride
- potassium
- magnesium
- calcium
- tot_iron
- diss_org_carb
- diss_inorg_carb
- diss_inorg_phosp
- tot_phosp
- suspend_solids
- density
- diss_carb_dioxide
- diss_oxygen_fluid
- vfa
- benzene
- toluene
- ethylbenzene
- xylene
- api
- tan
- viscosity
- pour_point
- saturates_pc
- aromatics_pc
- resins_pc
- asphaltenes_pc
- misc_param
- additional_info
slot_usage:
samp_name:
name: samp_name
required: true
project_name:
name: project_name
required: true
hcr:
name: hcr
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: true
hc_produced:
name: hc_produced
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: true
basin:
name: basin
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: true
field:
name: field
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
reservoir:
name: reservoir
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
hcr_temp:
name: hcr_temp
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: true
tvdss_of_hcr_temp:
name: tvdss_of_hcr_temp
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
hcr_pressure:
name: hcr_pressure
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
tvdss_of_hcr_press:
name: tvdss_of_hcr_press
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
permeability:
name: permeability
domain_of:
- hydrocarbon resources-cores
required: false
porosity:
name: porosity
domain_of:
- sediment
- hydrocarbon resources-cores
- agriculture
required: false
lithology:
name: lithology
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
depos_env:
name: depos_env
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
hcr_geol_age:
name: hcr_geol_age
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
owc_tvdss:
name: owc_tvdss
domain_of:
- hydrocarbon resources-cores
required: false
hcr_fw_salinity:
name: hcr_fw_salinity
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
sulfate_fw:
name: sulfate_fw
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: true
vfa_fw:
name: vfa_fw
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: true
sr_kerog_type:
name: sr_kerog_type
domain_of:
- hydrocarbon resources-cores
required: false
sr_lithology:
name: sr_lithology
domain_of:
- hydrocarbon resources-cores
required: false
sr_dep_env:
name: sr_dep_env
domain_of:
- hydrocarbon resources-cores
required: false
sr_geol_age:
name: sr_geol_age
domain_of:
- hydrocarbon resources-cores
required: false
samp_well_name:
name: samp_well_name
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
win:
name: win
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
samp_type:
name: samp_type
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- food-food production facility
- food-farm environment
required: true
samp_subtype:
name: samp_subtype
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
temp:
name: temp
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- soil
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- core
- built environment
- air
- agriculture
required: true
pressure:
name: pressure
domain_of:
- water
- sediment
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
samp_tvdss:
name: samp_tvdss
domain_of:
- hydrocarbon resources-cores
required: false
samp_md:
name: samp_md
domain_of:
- hydrocarbon resources-cores
required: false
elev:
name: elev
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- soil
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- core
- built environment
- air
- agriculture
required: false
oxy_stat_samp:
name: oxy_stat_samp
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- air
- agriculture
required: false
samp_transport_cond:
name: samp_transport_cond
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
samp_store_temp:
name: samp_store_temp
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- air
required: false
samp_store_dur:
name: samp_store_dur
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- air
- agriculture
required: false
samp_store_loc:
name: samp_store_loc
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- air
- agriculture
required: false
samp_vol_we_dna_ext:
name: samp_vol_we_dna_ext
required: false
organism_count:
name: organism_count
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- built environment
- air
- agriculture
required: false
org_count_qpcr_info:
name: org_count_qpcr_info
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
ph:
name: ph
domain_of:
- water
- wastewater_sludge
- soil
- sediment
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- food-farm environment
required: false
salinity:
name: salinity
domain_of:
- water
- wastewater_sludge
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-farm environment
- air
required: false
alkalinity:
name: alkalinity
domain_of:
- water
- wastewater_sludge
- sediment
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
alkalinity_method:
name: alkalinity_method
domain_of:
- water
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
sulfate:
name: sulfate
domain_of:
- water
- sediment
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
sulfide:
name: sulfide
domain_of:
- water
- sediment
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
tot_sulfur:
name: tot_sulfur
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
nitrate:
name: nitrate
domain_of:
- water
- wastewater_sludge
- sediment
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
nitrite:
name: nitrite
domain_of:
- water
- sediment
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
ammonium:
name: ammonium
domain_of:
- water
- sediment
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
tot_nitro:
name: tot_nitro
domain_of:
- water
- wastewater_sludge
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- agriculture
required: false
diss_iron:
name: diss_iron
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
sodium:
name: sodium
domain_of:
- water
- wastewater_sludge
- sediment
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
chloride:
name: chloride
domain_of:
- water
- sediment
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
potassium:
name: potassium
domain_of:
- water
- sediment
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
magnesium:
name: magnesium
domain_of:
- water
- sediment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
calcium:
name: calcium
domain_of:
- water
- sediment
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
tot_iron:
name: tot_iron
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
diss_org_carb:
name: diss_org_carb
domain_of:
- water
- sediment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
diss_inorg_carb:
name: diss_inorg_carb
domain_of:
- water
- sediment
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
diss_inorg_phosp:
name: diss_inorg_phosp
domain_of:
- water
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
tot_phosp:
name: tot_phosp
domain_of:
- water
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
suspend_solids:
name: suspend_solids
domain_of:
- wastewater_sludge
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
density:
name: density
domain_of:
- water
- sediment
- miscellaneous natural or artificial environment
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
diss_carb_dioxide:
name: diss_carb_dioxide
domain_of:
- water
- sediment
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
diss_oxygen_fluid:
name: diss_oxygen_fluid
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
vfa:
name: vfa
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
benzene:
name: benzene
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
toluene:
name: toluene
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
ethylbenzene:
name: ethylbenzene
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
xylene:
name: xylene
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
api:
name: api
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: true
tan:
name: tan
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
viscosity:
name: viscosity
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
pour_point:
name: pour_point
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
saturates_pc:
name: saturates_pc
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
aromatics_pc:
name: aromatics_pc
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
resins_pc:
name: resins_pc
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
asphaltenes_pc:
name: asphaltenes_pc
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
misc_param:
name: misc_param
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- soil
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- air
- agriculture
required: false
additional_info:
name: additional_info
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
Induced
name: hydrocarbon resources-cores
description: hydrocarbon resources-cores
from_schema: http://w3id.org/mixs
slot_usage:
samp_name:
name: samp_name
required: true
project_name:
name: project_name
required: true
hcr:
name: hcr
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: true
hc_produced:
name: hc_produced
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: true
basin:
name: basin
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: true
field:
name: field
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
reservoir:
name: reservoir
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
hcr_temp:
name: hcr_temp
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: true
tvdss_of_hcr_temp:
name: tvdss_of_hcr_temp
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
hcr_pressure:
name: hcr_pressure
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
tvdss_of_hcr_press:
name: tvdss_of_hcr_press
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
permeability:
name: permeability
domain_of:
- hydrocarbon resources-cores
required: false
porosity:
name: porosity
domain_of:
- sediment
- hydrocarbon resources-cores
- agriculture
required: false
lithology:
name: lithology
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
depos_env:
name: depos_env
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
hcr_geol_age:
name: hcr_geol_age
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
owc_tvdss:
name: owc_tvdss
domain_of:
- hydrocarbon resources-cores
required: false
hcr_fw_salinity:
name: hcr_fw_salinity
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
sulfate_fw:
name: sulfate_fw
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: true
vfa_fw:
name: vfa_fw
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: true
sr_kerog_type:
name: sr_kerog_type
domain_of:
- hydrocarbon resources-cores
required: false
sr_lithology:
name: sr_lithology
domain_of:
- hydrocarbon resources-cores
required: false
sr_dep_env:
name: sr_dep_env
domain_of:
- hydrocarbon resources-cores
required: false
sr_geol_age:
name: sr_geol_age
domain_of:
- hydrocarbon resources-cores
required: false
samp_well_name:
name: samp_well_name
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
win:
name: win
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
samp_type:
name: samp_type
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- food-food production facility
- food-farm environment
required: true
samp_subtype:
name: samp_subtype
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
temp:
name: temp
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- soil
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- core
- built environment
- air
- agriculture
required: true
pressure:
name: pressure
domain_of:
- water
- sediment
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
samp_tvdss:
name: samp_tvdss
domain_of:
- hydrocarbon resources-cores
required: false
samp_md:
name: samp_md
domain_of:
- hydrocarbon resources-cores
required: false
elev:
name: elev
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- soil
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- core
- built environment
- air
- agriculture
required: false
oxy_stat_samp:
name: oxy_stat_samp
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- air
- agriculture
required: false
samp_transport_cond:
name: samp_transport_cond
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
samp_store_temp:
name: samp_store_temp
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- air
required: false
samp_store_dur:
name: samp_store_dur
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- air
- agriculture
required: false
samp_store_loc:
name: samp_store_loc
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- air
- agriculture
required: false
samp_vol_we_dna_ext:
name: samp_vol_we_dna_ext
required: false
organism_count:
name: organism_count
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- built environment
- air
- agriculture
required: false
org_count_qpcr_info:
name: org_count_qpcr_info
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
ph:
name: ph
domain_of:
- water
- wastewater_sludge
- soil
- sediment
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- food-farm environment
required: false
salinity:
name: salinity
domain_of:
- water
- wastewater_sludge
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-farm environment
- air
required: false
alkalinity:
name: alkalinity
domain_of:
- water
- wastewater_sludge
- sediment
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
alkalinity_method:
name: alkalinity_method
domain_of:
- water
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
sulfate:
name: sulfate
domain_of:
- water
- sediment
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
sulfide:
name: sulfide
domain_of:
- water
- sediment
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
tot_sulfur:
name: tot_sulfur
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
nitrate:
name: nitrate
domain_of:
- water
- wastewater_sludge
- sediment
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
nitrite:
name: nitrite
domain_of:
- water
- sediment
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
ammonium:
name: ammonium
domain_of:
- water
- sediment
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
tot_nitro:
name: tot_nitro
domain_of:
- water
- wastewater_sludge
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- agriculture
required: false
diss_iron:
name: diss_iron
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
sodium:
name: sodium
domain_of:
- water
- wastewater_sludge
- sediment
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
chloride:
name: chloride
domain_of:
- water
- sediment
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
potassium:
name: potassium
domain_of:
- water
- sediment
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
magnesium:
name: magnesium
domain_of:
- water
- sediment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
calcium:
name: calcium
domain_of:
- water
- sediment
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
tot_iron:
name: tot_iron
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
diss_org_carb:
name: diss_org_carb
domain_of:
- water
- sediment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
diss_inorg_carb:
name: diss_inorg_carb
domain_of:
- water
- sediment
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
diss_inorg_phosp:
name: diss_inorg_phosp
domain_of:
- water
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
tot_phosp:
name: tot_phosp
domain_of:
- water
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
suspend_solids:
name: suspend_solids
domain_of:
- wastewater_sludge
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
density:
name: density
domain_of:
- water
- sediment
- miscellaneous natural or artificial environment
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
diss_carb_dioxide:
name: diss_carb_dioxide
domain_of:
- water
- sediment
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
diss_oxygen_fluid:
name: diss_oxygen_fluid
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
vfa:
name: vfa
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
benzene:
name: benzene
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
toluene:
name: toluene
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
ethylbenzene:
name: ethylbenzene
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
xylene:
name: xylene
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
api:
name: api
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: true
tan:
name: tan
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
viscosity:
name: viscosity
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
pour_point:
name: pour_point
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
saturates_pc:
name: saturates_pc
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
aromatics_pc:
name: aromatics_pc
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
resins_pc:
name: resins_pc
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
asphaltenes_pc:
name: asphaltenes_pc
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
misc_param:
name: misc_param
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- soil
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- air
- agriculture
required: false
additional_info:
name: additional_info
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
required: false
attributes:
lat_lon:
name: lat_lon
annotations:
expected_value:
tag: expected_value
value: decimal degrees, limit to 8 decimal points
description: The geographical origin of the sample as defined by latitude and
longitude. The values should be reported in decimal degrees and in WGS84 system
title: geographic location (latitude and longitude)
examples:
- value: 50.586825 6.408977
from_schema: http://w3id.org/mixs
aliases:
- geographic location (latitude and longitude)
is_a: environment field
string_serialization: '{float} {float}'
slot_uri: MIXS:0000009
multivalued: false
alias: lat_lon
owner: hydrocarbon resources-cores
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- soil
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MIMARKS specimen
- MIMARKS survey
- MISAG
- MIMAG
- MIUVIG
- built environment
- air
- agriculture
range: string
depth:
name: depth
annotations:
expected_value:
tag: expected_value
value: measurement value
description: The vertical distance below local surface, e.g. for sediment or soil
samples depth is measured from sediment or soil surface, respectively. Depth
can be reported as an interval for subsurface samples.
title: depth
examples:
- value: 10 meter
from_schema: http://w3id.org/mixs
aliases:
- depth
is_a: environment field
slot_uri: MIXS:0000018
multivalued: false
alias: depth
owner: hydrocarbon resources-cores
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- soil
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- core
- built environment
- air
- agriculture
range: quantity value
alt:
name: alt
annotations:
expected_value:
tag: expected_value
value: measurement value
description: Altitude is a term used to identify heights of objects such as airplanes,
space shuttles, rockets, atmospheric balloons and heights of places such as
atmospheric layers and clouds. It is used to measure the height of an object
which is above the earth's surface. In this context, the altitude measurement
is the vertical distance between the earth's surface above sea level and the
sampled position in the air
title: altitude
examples:
- value: 100 meter
from_schema: http://w3id.org/mixs
aliases:
- altitude
is_a: environment field
slot_uri: MIXS:0000094
multivalued: false
alias: alt
owner: hydrocarbon resources-cores
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- soil
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- core
- built environment
- air
- agriculture
range: quantity value
elev:
name: elev
description: Elevation of the sampling site is its height above a fixed reference
point, most commonly the mean sea level. Elevation is mainly used when referring
to points on the earth's surface, while altitude is used for points above the
surface, such as an aircraft in flight or a spacecraft in orbit.
title: elevation
from_schema: http://w3id.org/mixs
is_a: environment field
slot_uri: MIXS:0000093
multivalued: false
alias: elev
owner: hydrocarbon resources-cores
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- soil
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- core
- built environment
- air
- agriculture
range: quantity value
required: false
temp:
name: temp
description: Temperature of the sample at the time of sampling.
title: temperature
from_schema: http://w3id.org/mixs
is_a: environment field
slot_uri: MIXS:0000113
multivalued: false
alias: temp
owner: hydrocarbon resources-cores
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- soil
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- core
- built environment
- air
- agriculture
range: quantity value
required: true
geo_loc_name:
name: geo_loc_name
annotations:
expected_value:
tag: expected_value
value: 'country or sea name (INSDC or GAZ): region(GAZ), specific location
name'
description: The geographical origin of the sample as defined by the country or
sea name followed by specific region name. Country or sea names should be chosen
from the INSDC country list (http://insdc.org/country.html), or the GAZ ontology
(http://purl.bioontology.org/ontology/GAZ)
title: geographic location (country and/or sea,region)
examples:
- value: 'USA: Maryland, Bethesda'
from_schema: http://w3id.org/mixs
aliases:
- geographic location (country and/or sea,region)
is_a: environment field
string_serialization: '{term}: {term}, {text}'
slot_uri: MIXS:0000010
multivalued: false
alias: geo_loc_name
owner: hydrocarbon resources-cores
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- soil
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MIMARKS specimen
- MIMARKS survey
- MISAG
- MIMAG
- MIUVIG
- built environment
- air
- agriculture
range: string
collection_date:
name: collection_date
annotations:
expected_value:
tag: expected_value
value: date and time
description: 'The time of sampling, either as an instance (single point in time)
or interval. In case no exact time is available, the date/time can be right
truncated i.e. all of these are valid times: 2008-01-23T19:23:10+00:00; 2008-01-23T19:23:10;
2008-01-23; 2008-01; 2008; Except: 2008-01; 2008 all are ISO8601 compliant'
title: collection date
examples:
- value: 2018-05-11T10:00:00+01:00; 2018-05-11
from_schema: http://w3id.org/mixs
aliases:
- collection date
is_a: environment field
slot_uri: MIXS:0000011
multivalued: false
alias: collection_date
owner: hydrocarbon resources-cores
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- soil
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MIMARKS specimen
- MIMARKS survey
- MISAG
- MIMAG
- MIUVIG
- built environment
- air
- agriculture
range: date
env_broad_scale:
name: env_broad_scale
annotations:
expected_value:
tag: expected_value
value: The major environment type(s) where the sample was collected. Recommend
subclasses of biome [ENVO:00000428]. Multiple terms can be separated by
one or more pipes.
description: 'Report the major environmental system the sample or specimen came
from. The system(s) identified should have a coarse spatial grain, to provide
the general environmental context of where the sampling was done (e.g. in the
desert or a rainforest). We recommend using subclasses of EnvO’s biome class: http://purl.obolibrary.org/obo/ENVO_00000428.
EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS'
title: broad-scale environmental context
examples:
- value: oceanic epipelagic zone biome [ENVO:01000033] for annotating a water
sample from the photic zone in middle of the Atlantic Ocean
from_schema: http://w3id.org/mixs
aliases:
- broad-scale environmental context
is_a: environment field
string_serialization: '{termLabel} {[termID]}'
slot_uri: MIXS:0000012
multivalued: false
alias: env_broad_scale
owner: hydrocarbon resources-cores
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- soil
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MIMARKS specimen
- MIMARKS survey
- MISAG
- MIMAG
- MIUVIG
- built environment
- air
- agriculture
range: string
env_local_scale:
name: env_local_scale
annotations:
expected_value:
tag: expected_value
value: Environmental entities having causal influences upon the entity at
time of sampling.
description: 'Report the entity or entities which are in the sample or specimen’s
local vicinity and which you believe have significant causal influences on your
sample or specimen. We recommend using EnvO terms which are of smaller spatial
grain than your entry for env_broad_scale. Terms, such as anatomical sites,
from other OBO Library ontologies which interoperate with EnvO (e.g. UBERON)
are accepted in this field. EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS.'
title: local environmental context
examples:
- value: 'litter layer [ENVO:01000338]; Annotating a pooled sample taken from
various vegetation layers in a forest consider: canopy [ENVO:00000047]|herb
and fern layer [ENVO:01000337]|litter layer [ENVO:01000338]|understory [01000335]|shrub
layer [ENVO:01000336].'
from_schema: http://w3id.org/mixs
aliases:
- local environmental context
is_a: environment field
string_serialization: '{termLabel} {[termID]}'
slot_uri: MIXS:0000013
multivalued: false
alias: env_local_scale
owner: hydrocarbon resources-cores
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- soil
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MIMARKS specimen
- MIMARKS survey
- MISAG
- MIMAG
- MIUVIG
- built environment
- air
- agriculture
range: string
env_medium:
name: env_medium
annotations:
expected_value:
tag: expected_value
value: The material displaced by the entity at time of sampling. Recommend
subclasses of environmental material [ENVO:00010483].
description: 'Report the environmental material(s) immediately surrounding the
sample or specimen at the time of sampling. We recommend using subclasses of
''environmental material'' (http://purl.obolibrary.org/obo/ENVO_00010483). EnvO
documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS
. Terms from other OBO ontologies are permissible as long as they reference
mass/volume nouns (e.g. air, water, blood) and not discrete, countable entities
(e.g. a tree, a leaf, a table top).'
title: environmental medium
examples:
- value: 'soil [ENVO:00001998]; Annotating a fish swimming in the upper 100 m
of the Atlantic Ocean, consider: ocean water [ENVO:00002151]. Example: Annotating
a duck on a pond consider: pond water [ENVO:00002228]|air [ENVO_00002005]'
from_schema: http://w3id.org/mixs
aliases:
- environmental medium
is_a: environment field
string_serialization: '{termLabel} {[termID]}'
slot_uri: MIXS:0000014
multivalued: false
alias: env_medium
owner: hydrocarbon resources-cores
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- soil
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MIMARKS specimen
- MIMARKS survey
- MISAG
- MIMAG
- MIUVIG
- built environment
- air
- agriculture
range: string
hcr:
name: hcr
description: Main Hydrocarbon Resource type. The term "Hydrocarbon Resource" HCR
defined as a natural environmental feature containing large amounts of hydrocarbons
at high concentrations potentially suitable for commercial exploitation. This
term should not be confused with the Hydrocarbon Occurrence term which also
includes hydrocarbon-rich environments with currently limited commercial interest
such as seeps, outcrops, gas hydrates etc. If "other" is specified, please propose
entry in "additional info" field
title: hydrocarbon resource type
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000988
multivalued: false
alias: hcr
owner: hydrocarbon resources-cores
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: hcr_enum
required: true
hc_produced:
name: hc_produced
description: Main hydrocarbon type produced from resource (i.e. Oil, gas, condensate,
etc). If "other" is specified, please propose entry in "additional info" field
title: hydrocarbon type produced
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000989
multivalued: false
alias: hc_produced
owner: hydrocarbon resources-cores
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: hc_produced_enum
required: true
basin:
name: basin
description: Name of the basin (e.g. Campos)
title: basin name
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text}'
slot_uri: MIXS:0000290
multivalued: false
alias: basin
owner: hydrocarbon resources-cores
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: string
required: true
field:
name: field
description: Name of the hydrocarbon field (e.g. Albacora)
title: field name
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text}'
slot_uri: MIXS:0000291
multivalued: false
alias: field
owner: hydrocarbon resources-cores
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: string
required: false
reservoir:
name: reservoir
description: Name of the reservoir (e.g. Carapebus)
title: reservoir name
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text}'
slot_uri: MIXS:0000303
multivalued: false
alias: reservoir
owner: hydrocarbon resources-cores
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: string
required: false
hcr_temp:
name: hcr_temp
description: Original temperature of the hydrocarbon resource
title: hydrocarbon resource original temperature
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{float} - {float} {unit}'
slot_uri: MIXS:0000393
multivalued: false
alias: hcr_temp
owner: hydrocarbon resources-cores
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: string
required: true
tvdss_of_hcr_temp:
name: tvdss_of_hcr_temp
description: True vertical depth subsea (TVDSS) of the hydrocarbon resource where
the original temperature was measured (e.g. 1345 m).
title: depth (TVDSS) of hydrocarbon resource temperature
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000394
multivalued: false
alias: tvdss_of_hcr_temp
owner: hydrocarbon resources-cores
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: false
hcr_pressure:
name: hcr_pressure
description: Original pressure of the hydrocarbon resource
title: hydrocarbon resource original pressure
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{float} - {float} {unit}'
slot_uri: MIXS:0000395
multivalued: false
alias: hcr_pressure
owner: hydrocarbon resources-cores
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: string
required: false
tvdss_of_hcr_press:
name: tvdss_of_hcr_press
description: True vertical depth subsea (TVDSS) of the hydrocarbon resource where
the original pressure was measured (e.g. 1578 m).
title: depth (TVDSS) of hydrocarbon resource pressure
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000397
multivalued: false
alias: tvdss_of_hcr_press
owner: hydrocarbon resources-cores
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: false
permeability:
name: permeability
description: 'Measure of the ability of a hydrocarbon resource to allow fluids
to pass through it. (Additional information: https://en.wikipedia.org/wiki/Permeability_(earth_sciences))'
title: permeability
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{integer} - {integer} {unit}'
slot_uri: MIXS:0000404
multivalued: false
alias: permeability
owner: hydrocarbon resources-cores
domain_of:
- hydrocarbon resources-cores
range: string
required: false
porosity:
name: porosity
description: Porosity of deposited sediment is volume of voids divided by the
total volume of sample
title: porosity
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{float} - {float} {unit}'
slot_uri: MIXS:0000211
multivalued: false
alias: porosity
owner: hydrocarbon resources-cores
domain_of:
- sediment
- hydrocarbon resources-cores
- agriculture
range: string
required: false
lithology:
name: lithology
description: 'Hydrocarbon resource main lithology (Additional information: http://petrowiki.org/Lithology_and_rock_type_determination).
If "other" is specified, please propose entry in "additional info" field'
title: lithology
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000990
multivalued: false
alias: lithology
owner: hydrocarbon resources-cores
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: lithology_enum
required: false
depos_env:
name: depos_env
description: Main depositional environment (https://en.wikipedia.org/wiki/Depositional_environment).
If "other" is specified, please propose entry in "additional info" field
title: depositional environment
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000992
multivalued: false
alias: depos_env
owner: hydrocarbon resources-cores
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: depos_env_enum
required: false
hcr_geol_age:
name: hcr_geol_age
description: 'Geological age of hydrocarbon resource (Additional info: https://en.wikipedia.org/wiki/Period_(geology)).
If "other" is specified, please propose entry in "additional info" field'
title: hydrocarbon resource geological age
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000993
multivalued: false
alias: hcr_geol_age
owner: hydrocarbon resources-cores
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: hcr_geol_age_enum
required: false
owc_tvdss:
name: owc_tvdss
description: Depth of the original oil water contact (OWC) zone (average) (m TVDSS)
title: oil water contact depth
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000405
multivalued: false
alias: owc_tvdss
owner: hydrocarbon resources-cores
domain_of:
- hydrocarbon resources-cores
range: quantity value
required: false
hcr_fw_salinity:
name: hcr_fw_salinity
description: Original formation water salinity (prior to secondary recovery e.g.
Waterflooding) expressed as TDS
title: formation water salinity
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000406
multivalued: false
alias: hcr_fw_salinity
owner: hydrocarbon resources-cores
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: false
sulfate_fw:
name: sulfate_fw
description: Original sulfate concentration in the hydrocarbon resource
title: sulfate in formation water
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000407
multivalued: false
alias: sulfate_fw
owner: hydrocarbon resources-cores
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: true
vfa_fw:
name: vfa_fw
description: Original volatile fatty acid concentration in the hydrocarbon resource
title: vfa in formation water
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000408
multivalued: false
alias: vfa_fw
owner: hydrocarbon resources-cores
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: true
sr_kerog_type:
name: sr_kerog_type
description: 'Origin of kerogen. Type I: Algal (aquatic), Type II: planktonic
and soft plant material (aquatic or terrestrial), Type III: terrestrial woody/
fibrous plant material (terrestrial), Type IV: oxidized recycled woody debris
(terrestrial) (additional information: https://en.wikipedia.org/wiki/Kerogen).
If "other" is specified, please propose entry in "additional info" field'
title: source rock kerogen type
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000994
multivalued: false
alias: sr_kerog_type
owner: hydrocarbon resources-cores
domain_of:
- hydrocarbon resources-cores
range: sr_kerog_type_enum
required: false
sr_lithology:
name: sr_lithology
description: Lithology of source rock (https://en.wikipedia.org/wiki/Source_rock).
If "other" is specified, please propose entry in "additional info" field
title: source rock lithology
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000995
multivalued: false
alias: sr_lithology
owner: hydrocarbon resources-cores
domain_of:
- hydrocarbon resources-cores
range: sr_lithology_enum
required: false
sr_dep_env:
name: sr_dep_env
description: Source rock depositional environment (https://en.wikipedia.org/wiki/Source_rock).
If "other" is specified, please propose entry in "additional info" field
title: source rock depositional environment
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000996
multivalued: false
alias: sr_dep_env
owner: hydrocarbon resources-cores
domain_of:
- hydrocarbon resources-cores
range: sr_dep_env_enum
required: false
sr_geol_age:
name: sr_geol_age
description: 'Geological age of source rock (Additional info: https://en.wikipedia.org/wiki/Period_(geology)).
If "other" is specified, please propose entry in "additional info" field'
title: source rock geological age
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000997
multivalued: false
alias: sr_geol_age
owner: hydrocarbon resources-cores
domain_of:
- hydrocarbon resources-cores
range: sr_geol_age_enum
required: false
samp_well_name:
name: samp_well_name
description: Name of the well (e.g. BXA1123) where sample was taken
title: sample well name
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text}'
slot_uri: MIXS:0000296
multivalued: false
alias: samp_well_name
owner: hydrocarbon resources-cores
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: string
required: false
win:
name: win
description: 'A unique identifier of a well or wellbore. This is part of the Global
Framework for Well Identification initiative which is compiled by the Professional
Petroleum Data Management Association (PPDM) in an effort to improve well identification
systems. (Supporting information: https://ppdm.org/ and http://dl.ppdm.org/dl/690)'
title: well identification number
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text}'
slot_uri: MIXS:0000297
multivalued: false
alias: win
owner: hydrocarbon resources-cores
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: string
required: false
samp_type:
name: samp_type
description: The type of material from which the sample was obtained. For the
Hydrocarbon package, samples include types like core, rock trimmings, drill
cuttings, piping section, coupon, pigging debris, solid deposit, produced fluid,
produced water, injected water, swabs, etc. For the Food Package, samples are
usually categorized as food, body products or tissues, or environmental material.
This field accepts terms listed under environmental specimen (http://purl.obolibrary.org/obo/GENEPIO_0001246).
title: sample type
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{termLabel} {[termID]}'
slot_uri: MIXS:0000998
multivalued: false
alias: samp_type
owner: hydrocarbon resources-cores
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- food-food production facility
- food-farm environment
range: string
required: true
samp_subtype:
name: samp_subtype
description: Name of sample sub-type. For example if "sample type" is "Produced
Water" then subtype could be "Oil Phase" or "Water Phase". If "other" is specified,
please propose entry in "additional info" field
title: sample subtype
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000999
multivalued: false
alias: samp_subtype
owner: hydrocarbon resources-cores
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: samp_subtype_enum
required: false
pressure:
name: pressure
description: Pressure to which the sample is subject to, in atmospheres
title: pressure
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000412
multivalued: false
alias: pressure
owner: hydrocarbon resources-cores
domain_of:
- water
- sediment
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: false
samp_tvdss:
name: samp_tvdss
description: Depth of the sample i.e. The vertical distance between the sea level
and the sampled position in the subsurface. Depth can be reported as an interval
for subsurface samples e.g. 1325.75-1362.25 m
title: sample true vertical depth subsea
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{float}-{float} {unit}'
slot_uri: MIXS:0000409
multivalued: false
alias: samp_tvdss
owner: hydrocarbon resources-cores
domain_of:
- hydrocarbon resources-cores
range: string
required: false
samp_md:
name: samp_md
description: In non deviated well, measured depth is equal to the true vertical
depth, TVD (TVD=TVDSS plus the reference or datum it refers to). In deviated
wells, the MD is the length of trajectory of the borehole measured from the
same reference or datum. Common datums used are ground level (GL), drilling
rig floor (DF), rotary table (RT), kelly bushing (KB) and mean sea level (MSL).
If "other" is specified, please propose entry in "additional info" field
title: sample measured depth
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000413
multivalued: false
alias: samp_md
owner: hydrocarbon resources-cores
domain_of:
- hydrocarbon resources-cores
range: samp_md_enum
required: false
oxy_stat_samp:
name: oxy_stat_samp
description: Oxygenation status of sample
title: oxygenation status of sample
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000753
multivalued: false
alias: oxy_stat_samp
owner: hydrocarbon resources-cores
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- air
- agriculture
range: oxy_stat_samp_enum
required: false
samp_transport_cond:
name: samp_transport_cond
description: Sample transport duration (in days or hrs) and temperature the sample
was exposed to (e.g. 5.5 days; 20 °C)
title: sample transport conditions
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{float} {unit};{float} {unit}'
slot_uri: MIXS:0000410
multivalued: false
alias: samp_transport_cond
owner: hydrocarbon resources-cores
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: string
required: false
samp_store_temp:
name: samp_store_temp
description: Temperature at which sample was stored, e.g. -80 degree Celsius
title: sample storage temperature
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000110
multivalued: false
alias: samp_store_temp
owner: hydrocarbon resources-cores
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- air
range: quantity value
required: false
samp_store_dur:
name: samp_store_dur
description: Duration for which the sample was stored
title: sample storage duration
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{duration}'
slot_uri: MIXS:0000116
multivalued: false
alias: samp_store_dur
owner: hydrocarbon resources-cores
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- air
- agriculture
range: string
required: false
samp_store_loc:
name: samp_store_loc
description: Location at which sample was stored, usually name of a specific freezer/room
title: sample storage location
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text}'
slot_uri: MIXS:0000755
multivalued: false
alias: samp_store_loc
owner: hydrocarbon resources-cores
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- air
- agriculture
range: string
required: false
organism_count:
name: organism_count
description: 'Total cell count of any organism (or group of organisms) per gram,
volume or area of sample, should include name of organism followed by count.
The method that was used for the enumeration (e.g. qPCR, atp, mpn, etc.) Should
also be provided. (example: total prokaryotes; 3.5e7 cells per ml; qpcr)'
title: organism count
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000103
multivalued: true
alias: organism_count
owner: hydrocarbon resources-cores
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- built environment
- air
- agriculture
range: organism_count_enum
required: false
org_count_qpcr_info:
name: org_count_qpcr_info
description: 'If qpcr was used for the cell count, the target gene name, the primer
sequence and the cycling conditions should also be provided. (Example: 16S rrna;
FWD:ACGTAGCTATGACGT REV:GTGCTAGTCGAGTAC; initial denaturation:90C_5min; denaturation:90C_2min;
annealing:52C_30 sec; elongation:72C_30 sec; 90 C for 1 min; final elongation:72C_5min;
30 cycles)'
title: organism count qPCR information
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text};FWD:{dna};REV:{dna};initial denaturation:degrees_minutes;denaturation:degrees_minutes;annealing:degrees_minutes;elongation:degrees_minutes;final
elongation:degrees_minutes; total cycles'
slot_uri: MIXS:0000099
multivalued: false
alias: org_count_qpcr_info
owner: hydrocarbon resources-cores
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: string
required: false
ph:
name: ph
description: Ph measurement of the sample, or liquid portion of sample, or aqueous
phase of the fluid
title: pH
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0001001
multivalued: false
alias: ph
owner: hydrocarbon resources-cores
domain_of:
- water
- wastewater_sludge
- soil
- sediment
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- food-farm environment
range: double
required: false
salinity:
name: salinity
description: The total concentration of all dissolved salts in a liquid or solid
sample. While salinity can be measured by a complete chemical analysis, this
method is difficult and time consuming. More often, it is instead derived from
the conductivity measurement. This is known as practical salinity. These derivations
compare the specific conductance of the sample to a salinity standard such as
seawater.
title: salinity
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000183
multivalued: false
alias: salinity
owner: hydrocarbon resources-cores
domain_of:
- water
- wastewater_sludge
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-farm environment
- air
range: quantity value
required: false
alkalinity:
name: alkalinity
description: Alkalinity, the ability of a solution to neutralize acids to the
equivalence point of carbonate or bicarbonate
title: alkalinity
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000421
multivalued: false
alias: alkalinity
owner: hydrocarbon resources-cores
domain_of:
- water
- wastewater_sludge
- sediment
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: false
alkalinity_method:
name: alkalinity_method
description: Method used for alkalinity measurement
title: alkalinity method
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text}'
slot_uri: MIXS:0000298
multivalued: false
alias: alkalinity_method
owner: hydrocarbon resources-cores
domain_of:
- water
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: string
required: false
sulfate:
name: sulfate
description: Concentration of sulfate in the sample
title: sulfate
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000423
multivalued: false
alias: sulfate
owner: hydrocarbon resources-cores
domain_of:
- water
- sediment
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: false
sulfide:
name: sulfide
description: Concentration of sulfide in the sample
title: sulfide
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000424
multivalued: false
alias: sulfide
owner: hydrocarbon resources-cores
domain_of:
- water
- sediment
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: false
tot_sulfur:
name: tot_sulfur
description: Concentration of total sulfur in the sample
title: total sulfur
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000419
multivalued: false
alias: tot_sulfur
owner: hydrocarbon resources-cores
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: false
nitrate:
name: nitrate
description: Concentration of nitrate in the sample
title: nitrate
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000425
multivalued: false
alias: nitrate
owner: hydrocarbon resources-cores
domain_of:
- water
- wastewater_sludge
- sediment
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: false
nitrite:
name: nitrite
description: Concentration of nitrite in the sample
title: nitrite
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000426
multivalued: false
alias: nitrite
owner: hydrocarbon resources-cores
domain_of:
- water
- sediment
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: false
ammonium:
name: ammonium
description: Concentration of ammonium in the sample
title: ammonium
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000427
multivalued: false
alias: ammonium
owner: hydrocarbon resources-cores
domain_of:
- water
- sediment
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: false
tot_nitro:
name: tot_nitro
description: 'Total nitrogen concentration of water samples, calculated by: total
nitrogen = total dissolved nitrogen + particulate nitrogen. Can also be measured
without filtering, reported as nitrogen'
title: total nitrogen concentration
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000102
multivalued: false
alias: tot_nitro
owner: hydrocarbon resources-cores
domain_of:
- water
- wastewater_sludge
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- agriculture
range: quantity value
required: false
diss_iron:
name: diss_iron
description: Concentration of dissolved iron in the sample
title: dissolved iron
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000139
multivalued: false
alias: diss_iron
owner: hydrocarbon resources-cores
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: false
sodium:
name: sodium
description: Sodium concentration in the sample
title: sodium
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000428
multivalued: false
alias: sodium
owner: hydrocarbon resources-cores
domain_of:
- water
- wastewater_sludge
- sediment
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: false
chloride:
name: chloride
description: Concentration of chloride in the sample
title: chloride
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000429
multivalued: false
alias: chloride
owner: hydrocarbon resources-cores
domain_of:
- water
- sediment
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: false
potassium:
name: potassium
description: Concentration of potassium in the sample
title: potassium
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000430
multivalued: false
alias: potassium
owner: hydrocarbon resources-cores
domain_of:
- water
- sediment
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: false
magnesium:
name: magnesium
description: Concentration of magnesium in the sample
title: magnesium
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000431
multivalued: false
alias: magnesium
owner: hydrocarbon resources-cores
domain_of:
- water
- sediment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: false
calcium:
name: calcium
description: Concentration of calcium in the sample
title: calcium
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000432
multivalued: false
alias: calcium
owner: hydrocarbon resources-cores
domain_of:
- water
- sediment
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: false
tot_iron:
name: tot_iron
description: Concentration of total iron in the sample
title: total iron
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000105
multivalued: false
alias: tot_iron
owner: hydrocarbon resources-cores
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: false
diss_org_carb:
name: diss_org_carb
description: Concentration of dissolved organic carbon in the sample, liquid portion
of the sample, or aqueous phase of the fluid
title: dissolved organic carbon
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000433
multivalued: false
alias: diss_org_carb
owner: hydrocarbon resources-cores
domain_of:
- water
- sediment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: false
diss_inorg_carb:
name: diss_inorg_carb
description: Dissolved inorganic carbon concentration in the sample, typically
measured after filtering the sample using a 0.45 micrometer filter
title: dissolved inorganic carbon
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000434
multivalued: false
alias: diss_inorg_carb
owner: hydrocarbon resources-cores
domain_of:
- water
- sediment
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: false
diss_inorg_phosp:
name: diss_inorg_phosp
description: Concentration of dissolved inorganic phosphorus in the sample
title: dissolved inorganic phosphorus
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000106
multivalued: false
alias: diss_inorg_phosp
owner: hydrocarbon resources-cores
domain_of:
- water
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: false
tot_phosp:
name: tot_phosp
description: 'Total phosphorus concentration in the sample, calculated by: total
phosphorus = total dissolved phosphorus + particulate phosphorus'
title: total phosphorus
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000117
multivalued: false
alias: tot_phosp
owner: hydrocarbon resources-cores
domain_of:
- water
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: false
suspend_solids:
name: suspend_solids
description: Concentration of substances including a wide variety of material,
such as silt, decaying plant and animal matter; can include multiple substances
title: suspended solids
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text};{float} {unit}'
slot_uri: MIXS:0000150
multivalued: true
alias: suspend_solids
owner: hydrocarbon resources-cores
domain_of:
- wastewater_sludge
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: string
required: false
density:
name: density
description: Density of the sample, which is its mass per unit volume (aka volumetric
mass density)
title: density
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000435
multivalued: false
alias: density
owner: hydrocarbon resources-cores
domain_of:
- water
- sediment
- miscellaneous natural or artificial environment
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: false
diss_carb_dioxide:
name: diss_carb_dioxide
description: Concentration of dissolved carbon dioxide in the sample or liquid
portion of the sample
title: dissolved carbon dioxide
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000436
multivalued: false
alias: diss_carb_dioxide
owner: hydrocarbon resources-cores
domain_of:
- water
- sediment
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: false
diss_oxygen_fluid:
name: diss_oxygen_fluid
description: Concentration of dissolved oxygen in the oil field produced fluids
as it contributes to oxgen-corrosion and microbial activity (e.g. Mic).
title: dissolved oxygen in fluids
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000438
multivalued: false
alias: diss_oxygen_fluid
owner: hydrocarbon resources-cores
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: false
vfa:
name: vfa
description: Concentration of Volatile Fatty Acids in the sample
title: volatile fatty acids
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000152
multivalued: false
alias: vfa
owner: hydrocarbon resources-cores
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: false
benzene:
name: benzene
description: Concentration of benzene in the sample
title: benzene
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000153
multivalued: false
alias: benzene
owner: hydrocarbon resources-cores
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: false
toluene:
name: toluene
description: Concentration of toluene in the sample
title: toluene
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000154
multivalued: false
alias: toluene
owner: hydrocarbon resources-cores
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: false
ethylbenzene:
name: ethylbenzene
description: Concentration of ethylbenzene in the sample
title: ethylbenzene
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000155
multivalued: false
alias: ethylbenzene
owner: hydrocarbon resources-cores
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: false
xylene:
name: xylene
description: Concentration of xylene in the sample
title: xylene
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000156
multivalued: false
alias: xylene
owner: hydrocarbon resources-cores
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: false
api:
name: api
description: 'API gravity is a measure of how heavy or light a petroleum liquid
is compared to water (source: https://en.wikipedia.org/wiki/API_gravity) (e.g.
31.1° API)'
title: API gravity
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000157
multivalued: false
alias: api
owner: hydrocarbon resources-cores
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: true
tan:
name: tan
description: 'Total Acid Number (TAN) is a measurement of acidity that is determined
by the amount of potassium hydroxide in milligrams that is needed to neutralize
the acids in one gram of oil. It is an important quality measurement of crude
oil. (source: https://en.wikipedia.org/wiki/Total_acid_number)'
title: total acid number
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000120
multivalued: false
alias: tan
owner: hydrocarbon resources-cores
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: false
viscosity:
name: viscosity
description: A measure of oil's resistance to gradual deformation by shear stress or tensile
stress (e.g. 3.5 cp; 100 °C)
title: viscosity
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{float} {unit};{float} {unit}'
slot_uri: MIXS:0000126
multivalued: false
alias: viscosity
owner: hydrocarbon resources-cores
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: string
required: false
pour_point:
name: pour_point
description: 'Temperature at which a liquid becomes semi solid and loses its flow
characteristics. In crude oil a high pour point is generally associated with
a high paraffin content, typically found in crude deriving from a larger proportion
of plant material. (soure: https://en.wikipedia.org/wiki/pour_point)'
title: pour point
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000127
multivalued: false
alias: pour_point
owner: hydrocarbon resources-cores
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: false
saturates_pc:
name: saturates_pc
description: 'Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis
method that divides crude oil components according to their polarizability
and polarity. There are three main methods to obtain SARA results. The most
popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source:
https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)'
title: saturates wt%
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text};{float} {unit}'
slot_uri: MIXS:0000131
multivalued: false
alias: saturates_pc
owner: hydrocarbon resources-cores
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: string
required: false
aromatics_pc:
name: aromatics_pc
description: 'Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis
method that divides crude oil components according to their polarizability
and polarity. There are three main methods to obtain SARA results. The most
popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source:
https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)'
title: aromatics wt%
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text};{float} {unit}'
slot_uri: MIXS:0000133
multivalued: false
alias: aromatics_pc
owner: hydrocarbon resources-cores
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: string
required: false
resins_pc:
name: resins_pc
description: 'Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis
method that divides crude oil components according to their polarizability
and polarity. There are three main methods to obtain SARA results. The most
popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source:
https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)'
title: resins wt%
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text};{float} {unit}'
slot_uri: MIXS:0000134
multivalued: false
alias: resins_pc
owner: hydrocarbon resources-cores
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: string
required: false
asphaltenes_pc:
name: asphaltenes_pc
description: 'Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis
method that divides crude oil components according to their polarizability
and polarity. There are three main methods to obtain SARA results. The most
popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source:
https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)'
title: asphaltenes wt%
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text};{float} {unit}'
slot_uri: MIXS:0000135
multivalued: false
alias: asphaltenes_pc
owner: hydrocarbon resources-cores
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: string
required: false
misc_param:
name: misc_param
description: Any other measurement performed or parameter collected, that is not
listed here
title: miscellaneous parameter
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text};{float} {unit}'
slot_uri: MIXS:0000752
multivalued: true
alias: misc_param
owner: hydrocarbon resources-cores
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- soil
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- air
- agriculture
range: string
required: false
additional_info:
name: additional_info
description: Information that doesn't fit anywhere else. Can also be used to propose
new entries for fields with controlled vocabulary
title: additional info
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text}'
slot_uri: MIXS:0000300
multivalued: false
alias: additional_info
owner: hydrocarbon resources-cores
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: string
required: false