Class: HydrocarbonResources-coresMIGSBacteria

Combinatorial checklist Minimal Information about a Genome Sequence: cultured bacteria/archaea with environmental package hydrocarbon resources-cores

URI: MIXS:HydrocarbonResources-coresMIGSBacteria

Inheritance

• HydrocarbonResources-cores
  • HydrocarbonResources-coresMIGSBacteria [ MIGSBacteria]

Slots

Name	Cardinality and Range	Description	Inheritance
samp_name	1..1 String	A local identifier or name that for the material sample used for extracting n...	MIGSBacteria
samp_taxon_id	1..1 String	NCBI taxon id of the sample	MIGSBacteria
project_name	1..1 String	Name of the project within which the sequencing was organized	MIGSBacteria
experimental_factor	0..1 String	Experimental factors are essentially the variable aspects of an experiment de...	MIGSBacteria
lat_lon	1..1 String	The geographical origin of the sample as defined by latitude and longitude	HydrocarbonResources-cores, MIGSBacteria
geo_loc_name	1..1 String	The geographical origin of the sample as defined by the country or sea name f...	HydrocarbonResources-cores, MIGSBacteria
collection_date	1..1 Date	The time of sampling, either as an instance (single point in time) or interva...	HydrocarbonResources-cores, MIGSBacteria
neg_cont_type	0..1 recommended NegContTypeEnum	The substance or equipment used as a negative control in an investigation	MIGSBacteria
pos_cont_type	0..1 recommended String	The substance, mixture, product, or apparatus used to verify that a process w...	MIGSBacteria
env_broad_scale	1..1 String	Report the major environmental system the sample or specimen came from	HydrocarbonResources-cores, MIGSBacteria
env_local_scale	1..1 String	Report the entity or entities which are in the sample or specimen’s local vic...	HydrocarbonResources-cores, MIGSBacteria
env_medium	1..1 String	Report the environmental material(s) immediately surrounding the sample or sp...	HydrocarbonResources-cores, MIGSBacteria
subspecf_gen_lin	0..1 recommended String	Information about the genetic distinctness of the sequenced organism below th...	MIGSBacteria
num_replicons	1..1 Integer	Reports the number of replicons in a nuclear genome of eukaryotes, in the gen...	MIGSBacteria
extrachrom_elements	0..1 recommended Integer	Do plasmids exist of significant phenotypic consequence (e	MIGSBacteria
estimated_size	0..1 String	The estimated size of the genome prior to sequencing	MIGSBacteria
ref_biomaterial	1..1 String	Primary publication if isolated before genome publication; otherwise, primary...	MIGSBacteria
source_mat_id	0..1 recommended String	A unique identifier assigned to a material sample (as defined by http://rs	MIGSBacteria
pathogenicity	0..1 recommended String	To what is the entity pathogenic	MIGSBacteria
biotic_relationship	0..1 recommended BioticRelationshipEnum	Description of relationship(s) between the subject organism and other organis...	MIGSBacteria
specific_host	0..1 recommended String	Report the host's taxonomic name and/or NCBI taxonomy ID	MIGSBacteria
host_spec_range	0..1 Integer	The range and diversity of host species that an organism is capable of infect...	MIGSBacteria
host_disease_stat	0..1 recommended String	List of diseases with which the host has been diagnosed; can include multiple...	MIGSBacteria
trophic_level	0..1 recommended TrophicLevelEnum	Trophic levels are the feeding position in a food chain	MIGSBacteria
encoded_traits	0..1 String	Should include key traits like antibiotic resistance or xenobiotic degradatio...	MIGSBacteria
rel_to_oxygen	0..1 recommended RelToOxygenEnum	Is this organism an aerobe, anaerobe? Please note that aerobic and anaerobic ...	MIGSBacteria
isol_growth_condt	1..1 String	Publication reference in the form of pubmed ID (pmid), digital object identif...	MIGSBacteria
samp_collec_device	0..1 String	The device used to collect an environmental sample	MIGSBacteria
samp_collec_method	0..1 String	The method employed for collecting the sample	MIGSBacteria
samp_mat_process	0..1 String	A brief description of any processing applied to the sample during or after r...	MIGSBacteria
samp_size	0..1 QuantityValue	The total amount or size (volume (ml), mass (g) or area (m2) ) of sample coll...	MIGSBacteria
samp_vol_we_dna_ext	0..1 QuantityValue	Volume (ml) or mass (g) of total collected sample processed for DNA extractio...	MIGSBacteria
nucl_acid_ext	0..1 recommended String	A link to a literature reference, electronic resource or a standard operating...	MIGSBacteria
nucl_acid_amp	0..1 recommended String	A link to a literature reference, electronic resource or a standard operating...	MIGSBacteria
lib_size	0..1 Integer	Total number of clones in the library prepared for the project	MIGSBacteria
lib_reads_seqd	0..1 Integer	Total number of clones sequenced from the library	MIGSBacteria
lib_layout	0..1 LibLayoutEnum	Specify whether to expect single, paired, or other configuration of reads	MIGSBacteria
lib_vector	0..1 String	Cloning vector type(s) used in construction of libraries	MIGSBacteria
lib_screen	0..1 String	Specific enrichment or screening methods applied before and/or after creating...	MIGSBacteria
adapters	0..1 recommended String	Adapters provide priming sequences for both amplification and sequencing of t...	MIGSBacteria
seq_meth	1..1 String	Sequencing machine used	MIGSBacteria
tax_ident	0..1 recommended TaxIdentEnum	The phylogenetic marker(s) used to assign an organism name to the SAG or MAG	MIGSBacteria
assembly_qual	1..1 AssemblyQualEnum	The assembly quality category is based on sets of criteria outlined for each ...	MIGSBacteria
assembly_name	0..1 recommended String	Name/version of the assembly provided by the submitter that is used in the ge...	MIGSBacteria
assembly_software	1..1 String	Tool(s) used for assembly, including version number and parameters	MIGSBacteria
annot	0..1 recommended String	Tool used for annotation, or for cases where annotation was provided by a com...	MIGSBacteria
number_contig	1..1 Integer	Total number of contigs in the cleaned/submitted assembly that makes up a giv...	MIGSBacteria
feat_pred	0..1 String	Method used to predict UViGs features such as ORFs, integration site, etc	MIGSBacteria
ref_db	0..1 String	List of database(s) used for ORF annotation, along with version number and re...	MIGSBacteria
sim_search_meth	0..1 String	Tool used to compare ORFs with database, along with version and cutoffs used	MIGSBacteria
tax_class	0..1 String	Method used for taxonomic classification, along with reference database used,...	MIGSBacteria
compl_score	0..1 String	Completeness score is typically based on either the fraction of markers found...	MIGSBacteria
compl_software	0..1 String	Tools used for completion estimate, i	MIGSBacteria
associated_resource	0..1 recommended String	A related resource that is referenced, cited, or otherwise associated to the ...	MIGSBacteria
sop	0..1 recommended String	Standard operating procedures used in assembly and/or annotation of genomes, ...	MIGSBacteria
depth	0..1 QuantityValue	The vertical distance below local surface, e	HydrocarbonResources-cores
alt	0..1 QuantityValue	Altitude is a term used to identify heights of objects such as airplanes, spa...	HydrocarbonResources-cores
elev	0..1 QuantityValue	Elevation of the sampling site is its height above a fixed reference point, m...	HydrocarbonResources-cores
temp	1..1 QuantityValue	Temperature of the sample at the time of sampling	HydrocarbonResources-cores
hcr	1..1 HcrEnum	Main Hydrocarbon Resource type	HydrocarbonResources-cores
hc_produced	1..1 HcProducedEnum	Main hydrocarbon type produced from resource (i	HydrocarbonResources-cores
basin	1..1 String	Name of the basin (e	HydrocarbonResources-cores
field	0..1 String	Name of the hydrocarbon field (e	HydrocarbonResources-cores
reservoir	0..1 String	Name of the reservoir (e	HydrocarbonResources-cores
hcr_temp	1..1 String	Original temperature of the hydrocarbon resource	HydrocarbonResources-cores
tvdss_of_hcr_temp	0..1 QuantityValue	True vertical depth subsea (TVDSS) of the hydrocarbon resource where the orig...	HydrocarbonResources-cores
hcr_pressure	0..1 String	Original pressure of the hydrocarbon resource	HydrocarbonResources-cores
tvdss_of_hcr_press	0..1 QuantityValue	True vertical depth subsea (TVDSS) of the hydrocarbon resource where the orig...	HydrocarbonResources-cores
permeability	0..1 String	Measure of the ability of a hydrocarbon resource to allow fluids to pass thro...	HydrocarbonResources-cores
porosity	0..1 String	Porosity of deposited sediment is volume of voids divided by the total volume...	HydrocarbonResources-cores
lithology	0..1 LithologyEnum	Hydrocarbon resource main lithology (Additional information: http://petrowiki	HydrocarbonResources-cores
depos_env	0..1 DeposEnvEnum	Main depositional environment (https://en	HydrocarbonResources-cores
hcr_geol_age	0..1 HcrGeolAgeEnum	Geological age of hydrocarbon resource (Additional info: https://en	HydrocarbonResources-cores
owc_tvdss	0..1 QuantityValue	Depth of the original oil water contact (OWC) zone (average) (m TVDSS)	HydrocarbonResources-cores
hcr_fw_salinity	0..1 QuantityValue	Original formation water salinity (prior to secondary recovery e	HydrocarbonResources-cores
sulfate_fw	1..1 QuantityValue	Original sulfate concentration in the hydrocarbon resource	HydrocarbonResources-cores
vfa_fw	1..1 QuantityValue	Original volatile fatty acid concentration in the hydrocarbon resource	HydrocarbonResources-cores
sr_kerog_type	0..1 SrKerogTypeEnum	Origin of kerogen	HydrocarbonResources-cores
sr_lithology	0..1 SrLithologyEnum	Lithology of source rock (https://en	HydrocarbonResources-cores
sr_dep_env	0..1 SrDepEnvEnum	Source rock depositional environment (https://en	HydrocarbonResources-cores
sr_geol_age	0..1 SrGeolAgeEnum	Geological age of source rock (Additional info: https://en	HydrocarbonResources-cores
samp_well_name	0..1 String	Name of the well (e	HydrocarbonResources-cores
win	0..1 String	A unique identifier of a well or wellbore	HydrocarbonResources-cores
samp_type	1..1 String	The type of material from which the sample was obtained	HydrocarbonResources-cores
samp_subtype	0..1 SampSubtypeEnum	Name of sample sub-type	HydrocarbonResources-cores
pressure	0..1 QuantityValue	Pressure to which the sample is subject to, in atmospheres	HydrocarbonResources-cores
samp_tvdss	0..1 String	Depth of the sample i	HydrocarbonResources-cores
samp_md	0..1 SampMdEnum	In non deviated well, measured depth is equal to the true vertical depth, TVD...	HydrocarbonResources-cores
oxy_stat_samp	0..1 OxyStatSampEnum	Oxygenation status of sample	HydrocarbonResources-cores
samp_transport_cond	0..1 String	Sample transport duration (in days or hrs) and temperature the sample was exp...	HydrocarbonResources-cores
samp_store_temp	0..1 QuantityValue	Temperature at which sample was stored, e	HydrocarbonResources-cores
samp_store_dur	0..1 String	Duration for which the sample was stored	HydrocarbonResources-cores
samp_store_loc	0..1 String	Location at which sample was stored, usually name of a specific freezer/room	HydrocarbonResources-cores
organism_count	0..* OrganismCountEnum	Total cell count of any organism (or group of organisms) per gram, volume or ...	HydrocarbonResources-cores
org_count_qpcr_info	0..1 String	If qpcr was used for the cell count, the target gene name, the primer sequenc...	HydrocarbonResources-cores
ph	0..1 Double	Ph measurement of the sample, or liquid portion of sample, or aqueous phase o...	HydrocarbonResources-cores
salinity	0..1 QuantityValue	The total concentration of all dissolved salts in a liquid or solid sample	HydrocarbonResources-cores
alkalinity	0..1 QuantityValue	Alkalinity, the ability of a solution to neutralize acids to the equivalence ...	HydrocarbonResources-cores
alkalinity_method	0..1 String	Method used for alkalinity measurement	HydrocarbonResources-cores
sulfate	0..1 QuantityValue	Concentration of sulfate in the sample	HydrocarbonResources-cores
sulfide	0..1 QuantityValue	Concentration of sulfide in the sample	HydrocarbonResources-cores
tot_sulfur	0..1 QuantityValue	Concentration of total sulfur in the sample	HydrocarbonResources-cores
nitrate	0..1 QuantityValue	Concentration of nitrate in the sample	HydrocarbonResources-cores
nitrite	0..1 QuantityValue	Concentration of nitrite in the sample	HydrocarbonResources-cores
ammonium	0..1 QuantityValue	Concentration of ammonium in the sample	HydrocarbonResources-cores
tot_nitro	0..1 QuantityValue	Total nitrogen concentration of water samples, calculated by: total nitrogen ...	HydrocarbonResources-cores
diss_iron	0..1 QuantityValue	Concentration of dissolved iron in the sample	HydrocarbonResources-cores
sodium	0..1 QuantityValue	Sodium concentration in the sample	HydrocarbonResources-cores
chloride	0..1 QuantityValue	Concentration of chloride in the sample	HydrocarbonResources-cores
potassium	0..1 QuantityValue	Concentration of potassium in the sample	HydrocarbonResources-cores
magnesium	0..1 QuantityValue	Concentration of magnesium in the sample	HydrocarbonResources-cores
calcium	0..1 QuantityValue	Concentration of calcium in the sample	HydrocarbonResources-cores
tot_iron	0..1 QuantityValue	Concentration of total iron in the sample	HydrocarbonResources-cores
diss_org_carb	0..1 QuantityValue	Concentration of dissolved organic carbon in the sample, liquid portion of th...	HydrocarbonResources-cores
diss_inorg_carb	0..1 QuantityValue	Dissolved inorganic carbon concentration in the sample, typically measured af...	HydrocarbonResources-cores
diss_inorg_phosp	0..1 QuantityValue	Concentration of dissolved inorganic phosphorus in the sample	HydrocarbonResources-cores
tot_phosp	0..1 QuantityValue	Total phosphorus concentration in the sample, calculated by: total phosphorus...	HydrocarbonResources-cores
suspend_solids	0..* String	Concentration of substances including a wide variety of material, such as sil...	HydrocarbonResources-cores
density	0..1 QuantityValue	Density of the sample, which is its mass per unit volume (aka volumetric mass...	HydrocarbonResources-cores
diss_carb_dioxide	0..1 QuantityValue	Concentration of dissolved carbon dioxide in the sample or liquid portion of ...	HydrocarbonResources-cores
diss_oxygen_fluid	0..1 QuantityValue	Concentration of dissolved oxygen in the oil field produced fluids as it cont...	HydrocarbonResources-cores
vfa	0..1 QuantityValue	Concentration of Volatile Fatty Acids in the sample	HydrocarbonResources-cores
benzene	0..1 QuantityValue	Concentration of benzene in the sample	HydrocarbonResources-cores
toluene	0..1 QuantityValue	Concentration of toluene in the sample	HydrocarbonResources-cores
ethylbenzene	0..1 QuantityValue	Concentration of ethylbenzene in the sample	HydrocarbonResources-cores
xylene	0..1 QuantityValue	Concentration of xylene in the sample	HydrocarbonResources-cores
api	1..1 QuantityValue	API gravity is a measure of how heavy or light a petroleum liquid is compared...	HydrocarbonResources-cores
tan	0..1 QuantityValue	Total Acid Number (TAN) is a measurement of acidity that is determined by th...	HydrocarbonResources-cores
viscosity	0..1 String	A measure of oil's resistance to gradual deformation by shear stress or t...	HydrocarbonResources-cores
pour_point	0..1 QuantityValue	Temperature at which a liquid becomes semi solid and loses its flow character...	HydrocarbonResources-cores
saturates_pc	0..1 String	Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis method that d...	HydrocarbonResources-cores
aromatics_pc	0..1 String	Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis method that d...	HydrocarbonResources-cores
resins_pc	0..1 String	Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis method that d...	HydrocarbonResources-cores
asphaltenes_pc	0..1 String	Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis method that d...	HydrocarbonResources-cores
misc_param	0..* String	Any other measurement performed or parameter collected, that is not listed he...	HydrocarbonResources-cores
additional_info	0..1 String	Information that doesn't fit anywhere else	HydrocarbonResources-cores

Identifier and Mapping Information

Schema Source

• from schema: http://w3id.org/mixs

Mappings

Mapping Type	Mapped Value
self	MIXS:HydrocarbonResources-coresMIGSBacteria
native	MIXS:HydrocarbonResources-coresMIGSBacteria

LinkML Source

Direct

name: hydrocarbon resources-cores MIGS bacteria
description: 'Combinatorial checklist Minimal Information about a Genome Sequence:
  cultured bacteria/archaea with environmental package hydrocarbon resources-cores'
from_schema: http://w3id.org/mixs
is_a: hydrocarbon resources-cores
mixins:
- MIGS bacteria

Induced

name: hydrocarbon resources-cores MIGS bacteria
description: 'Combinatorial checklist Minimal Information about a Genome Sequence:
  cultured bacteria/archaea with environmental package hydrocarbon resources-cores'
from_schema: http://w3id.org/mixs
is_a: hydrocarbon resources-cores
mixins:
- MIGS bacteria
attributes:
  samp_name:
    name: samp_name
    description: A local identifier or name that for the material sample used for
      extracting nucleic acids, and subsequent sequencing. It can refer either to
      the original material collected or to any derived sub-samples. It can have any
      format, but we suggest that you make it concise, unique and consistent within
      your lab, and as informative as possible. INSDC requires every sample name from
      a single Submitter to be unique. Use of a globally unique identifier for the
      field source_mat_id is recommended in addition to sample_name.
    title: sample name
    from_schema: http://w3id.org/mixs
    is_a: investigation field
    string_serialization: '{text}'
    slot_uri: MIXS:0001107
    multivalued: false
    alias: samp_name
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    range: string
    required: true
  samp_taxon_id:
    name: samp_taxon_id
    description: NCBI taxon id of the sample.  Maybe be a single taxon or mixed taxa
      sample. Use 'synthetic metagenome’ for mock community/positive controls, or
      'blank sample' for negative controls.
    title: Taxonomy ID of DNA sample
    from_schema: http://w3id.org/mixs
    is_a: investigation field
    string_serialization: '{text} [NCBI:txid]'
    slot_uri: MIXS:0001320
    multivalued: false
    alias: samp_taxon_id
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    range: string
    required: true
  project_name:
    name: project_name
    description: Name of the project within which the sequencing was organized
    title: project name
    from_schema: http://w3id.org/mixs
    is_a: investigation field
    string_serialization: '{text}'
    slot_uri: MIXS:0000092
    multivalued: false
    alias: project_name
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    range: string
    required: true
  experimental_factor:
    name: experimental_factor
    description: Experimental factors are essentially the variable aspects of an experiment
      design which can be used to describe an experiment, or set of experiments, in
      an increasingly detailed manner. This field accepts ontology terms from Experimental
      Factor Ontology (EFO) and/or Ontology for Biomedical Investigations (OBI). For
      a browser of EFO (v 2.95) terms, please see http://purl.bioontology.org/ontology/EFO;
      for a browser of OBI (v 2018-02-12) terms please see http://purl.bioontology.org/ontology/OBI
    title: experimental factor
    from_schema: http://w3id.org/mixs
    is_a: investigation field
    string_serialization: '{termLabel} {[termID]}|{text}'
    slot_uri: MIXS:0000008
    multivalued: false
    alias: experimental_factor
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    range: string
    required: false
  lat_lon:
    name: lat_lon
    description: The geographical origin of the sample as defined by latitude and
      longitude. The values should be reported in decimal degrees and in WGS84 system
    title: geographic location (latitude and longitude)
    from_schema: http://w3id.org/mixs
    is_a: environment field
    string_serialization: '{float} {float}'
    slot_uri: MIXS:0000009
    multivalued: false
    alias: lat_lon
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    - built environment
    - air
    - agriculture
    range: string
    required: true
  geo_loc_name:
    name: geo_loc_name
    description: The geographical origin of the sample as defined by the country or
      sea name followed by specific region name. Country or sea names should be chosen
      from the INSDC country list (http://insdc.org/country.html), or the GAZ ontology
      (http://purl.bioontology.org/ontology/GAZ)
    title: geographic location (country and/or sea,region)
    from_schema: http://w3id.org/mixs
    is_a: environment field
    string_serialization: '{term}: {term}, {text}'
    slot_uri: MIXS:0000010
    multivalued: false
    alias: geo_loc_name
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    - built environment
    - air
    - agriculture
    range: string
    required: true
  collection_date:
    name: collection_date
    description: 'The time of sampling, either as an instance (single point in time)
      or interval. In case no exact time is available, the date/time can be right
      truncated i.e. all of these are valid times: 2008-01-23T19:23:10+00:00; 2008-01-23T19:23:10;
      2008-01-23; 2008-01; 2008; Except: 2008-01; 2008 all are ISO8601 compliant'
    title: collection date
    from_schema: http://w3id.org/mixs
    is_a: environment field
    slot_uri: MIXS:0000011
    multivalued: false
    alias: collection_date
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    - built environment
    - air
    - agriculture
    range: date
    required: true
  neg_cont_type:
    name: neg_cont_type
    description: The substance or equipment used as a negative control in an investigation
    title: negative control type
    from_schema: http://w3id.org/mixs
    is_a: investigation field
    slot_uri: MIXS:0001321
    multivalued: false
    alias: neg_cont_type
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    range: neg_cont_type_enum
    recommended: true
  pos_cont_type:
    name: pos_cont_type
    description: The substance, mixture, product, or apparatus used to verify that
      a process which is part of an investigation delivers a true positive.
    title: positive control type
    from_schema: http://w3id.org/mixs
    is_a: investigation field
    string_serialization: '{term} or {text}'
    slot_uri: MIXS:0001322
    multivalued: false
    alias: pos_cont_type
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    range: string
    recommended: true
  env_broad_scale:
    name: env_broad_scale
    description: 'Report the major environmental system the sample or specimen came
      from. The system(s) identified should have a coarse spatial grain, to provide
      the general environmental context of where the sampling was done (e.g. in the
      desert or a rainforest). We recommend using subclasses of EnvO’s biome class:  http://purl.obolibrary.org/obo/ENVO_00000428.
      EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS'
    title: broad-scale environmental context
    from_schema: http://w3id.org/mixs
    is_a: environment field
    string_serialization: '{termLabel} {[termID]}'
    slot_uri: MIXS:0000012
    multivalued: false
    alias: env_broad_scale
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    - built environment
    - air
    - agriculture
    range: string
    required: true
  env_local_scale:
    name: env_local_scale
    description: 'Report the entity or entities which are in the sample or specimen’s
      local vicinity and which you believe have significant causal influences on your
      sample or specimen. We recommend using EnvO terms which are of smaller spatial
      grain than your entry for env_broad_scale. Terms, such as anatomical sites,
      from other OBO Library ontologies which interoperate with EnvO (e.g. UBERON)
      are accepted in this field. EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS.'
    title: local environmental context
    from_schema: http://w3id.org/mixs
    is_a: environment field
    string_serialization: '{termLabel} {[termID]}'
    slot_uri: MIXS:0000013
    multivalued: false
    alias: env_local_scale
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    - built environment
    - air
    - agriculture
    range: string
    required: true
  env_medium:
    name: env_medium
    description: 'Report the environmental material(s) immediately surrounding the
      sample or specimen at the time of sampling. We recommend using subclasses of
      ''environmental material'' (http://purl.obolibrary.org/obo/ENVO_00010483). EnvO
      documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS
      . Terms from other OBO ontologies are permissible as long as they reference
      mass/volume nouns (e.g. air, water, blood) and not discrete, countable entities
      (e.g. a tree, a leaf, a table top).'
    title: environmental medium
    from_schema: http://w3id.org/mixs
    is_a: environment field
    string_serialization: '{termLabel} {[termID]}'
    slot_uri: MIXS:0000014
    multivalued: false
    alias: env_medium
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    - built environment
    - air
    - agriculture
    range: string
    required: true
  subspecf_gen_lin:
    name: subspecf_gen_lin
    description: Information about the genetic distinctness of the sequenced organism
      below the subspecies level, e.g., serovar, serotype, biotype, ecotype, or any
      relevant genetic typing schemes like Group I plasmid. Subspecies should not
      be recorded in this term, but in the NCBI taxonomy. Supply both the lineage
      name and the lineage rank separated by a colon, e.g., biovar:abc123.
    title: subspecific genetic lineage
    from_schema: http://w3id.org/mixs
    is_a: nucleic acid sequence source field
    string_serialization: '{rank name}:{text}'
    slot_uri: MIXS:0000020
    multivalued: false
    alias: subspecf_gen_lin
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMARKS survey
    range: string
    recommended: true
  num_replicons:
    name: num_replicons
    description: Reports the number of replicons in a nuclear genome of eukaryotes,
      in the genome of a bacterium or archaea or the number of segments in a segmented
      virus. Always applied to the haploid chromosome count of a eukaryote
    title: number of replicons
    from_schema: http://w3id.org/mixs
    is_a: nucleic acid sequence source field
    slot_uri: MIXS:0000022
    multivalued: false
    alias: num_replicons
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS virus
    range: integer
    required: true
  extrachrom_elements:
    name: extrachrom_elements
    description: Do plasmids exist of significant phenotypic consequence (e.g. ones
      that determine virulence or antibiotic resistance). Megaplasmids? Other plasmids
      (borrelia has 15+ plasmids)
    title: extrachromosomal elements
    from_schema: http://w3id.org/mixs
    is_a: nucleic acid sequence source field
    slot_uri: MIXS:0000023
    multivalued: false
    alias: extrachrom_elements
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS org
    - MIMARKS survey
    range: integer
    recommended: true
  estimated_size:
    name: estimated_size
    description: The estimated size of the genome prior to sequencing. Of particular
      importance in the sequencing of (eukaryotic) genome which could remain in draft
      form for a long or unspecified period.
    title: estimated size
    from_schema: http://w3id.org/mixs
    is_a: nucleic acid sequence source field
    string_serialization: '{integer} bp'
    slot_uri: MIXS:0000024
    multivalued: false
    alias: estimated_size
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIUVIG
    range: string
    required: false
  ref_biomaterial:
    name: ref_biomaterial
    description: Primary publication if isolated before genome publication; otherwise,
      primary genome report.
    title: reference for biomaterial
    from_schema: http://w3id.org/mixs
    is_a: nucleic acid sequence source field
    string_serialization: '{PMID}|{DOI}|{URL}'
    slot_uri: MIXS:0000025
    multivalued: false
    alias: ref_biomaterial
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MISAG
    - MIMAG
    - MIUVIG
    range: string
    required: true
  source_mat_id:
    name: source_mat_id
    description: A unique identifier assigned to a material sample (as defined by
      http://rs.tdwg.org/dwc/terms/materialSampleID, and as opposed to a particular
      digital record of a material sample) used for extracting nucleic acids, and
      subsequent sequencing. The identifier can refer either to the original material
      collected or to any derived sub-samples. The INSDC qualifiers /specimen_voucher,
      /bio_material, or /culture_collection may or may not share the same value as
      the source_mat_id field. For instance, the /specimen_voucher qualifier and source_mat_id
      may both contain 'UAM:Herps:14' , referring to both the specimen voucher and
      sampled tissue with the same identifier. However, the /culture_collection qualifier
      may refer to a value from an initial culture (e.g. ATCC:11775) while source_mat_id
      would refer to an identifier from some derived culture from which the nucleic
      acids were extracted (e.g. xatc123 or ark:/2154/R2).
    title: source material identifiers
    from_schema: http://w3id.org/mixs
    is_a: nucleic acid sequence source field
    string_serialization: '{text}'
    slot_uri: MIXS:0000026
    multivalued: false
    alias: source_mat_id
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    range: string
    recommended: true
  pathogenicity:
    name: pathogenicity
    description: To what is the entity pathogenic
    title: known pathogenicity
    from_schema: http://w3id.org/mixs
    is_a: nucleic acid sequence source field
    string_serialization: '{text}'
    slot_uri: MIXS:0000027
    multivalued: false
    alias: pathogenicity
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS virus
    - MIUVIG
    range: string
    recommended: true
  biotic_relationship:
    name: biotic_relationship
    description: Description of relationship(s) between the subject organism and other
      organism(s) it is associated with. E.g., parasite on species X; mutualist with
      species Y. The target organism is the subject of the relationship, and the other
      organism(s) is the object
    title: observed biotic relationship
    from_schema: http://w3id.org/mixs
    is_a: nucleic acid sequence source field
    slot_uri: MIXS:0000028
    multivalued: false
    alias: biotic_relationship
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS virus
    - MIMARKS survey
    - MIUVIG
    range: biotic_relationship_enum
    recommended: true
  specific_host:
    name: specific_host
    description: Report the host's taxonomic name and/or NCBI taxonomy ID.
    title: host scientific name
    from_schema: http://w3id.org/mixs
    is_a: nucleic acid sequence source field
    string_serialization: '{text}|{NCBI taxid}'
    slot_uri: MIXS:0000029
    multivalued: false
    alias: specific_host
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIUVIG
    range: string
    recommended: true
  host_spec_range:
    name: host_spec_range
    description: The range and diversity of host species that an organism is capable
      of infecting, defined by NCBI taxonomy identifier.
    title: host specificity or range
    from_schema: http://w3id.org/mixs
    is_a: nucleic acid sequence source field
    slot_uri: MIXS:0000030
    multivalued: false
    alias: host_spec_range
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIUVIG
    range: integer
    required: false
  host_disease_stat:
    name: host_disease_stat
    description: List of diseases with which the host has been diagnosed; can include
      multiple diagnoses. The value of the field depends on host; for humans the terms
      should be chosen from the DO (Human Disease Ontology) at https://www.disease-ontology.org,
      non-human host diseases are free text
    title: host disease status
    from_schema: http://w3id.org/mixs
    is_a: nucleic acid sequence source field
    string_serialization: '{termLabel} {[termID]}|{text}'
    slot_uri: MIXS:0000031
    multivalued: false
    alias: host_disease_stat
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS virus
    - MIUVIG
    range: string
    recommended: true
  trophic_level:
    name: trophic_level
    description: Trophic levels are the feeding position in a food chain. Microbes
      can be a range of producers (e.g. chemolithotroph)
    title: trophic level
    from_schema: http://w3id.org/mixs
    is_a: nucleic acid sequence source field
    slot_uri: MIXS:0000032
    multivalued: false
    alias: trophic_level
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIMARKS survey
    range: trophic_level_enum
    recommended: true
  encoded_traits:
    name: encoded_traits
    description: Should include key traits like antibiotic resistance or xenobiotic
      degradation phenotypes for plasmids, converting genes for phage
    title: encoded traits
    from_schema: http://w3id.org/mixs
    is_a: nucleic acid sequence source field
    string_serialization: '{text}'
    slot_uri: MIXS:0000034
    multivalued: false
    alias: encoded_traits
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - core
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    range: string
    required: false
  rel_to_oxygen:
    name: rel_to_oxygen
    description: Is this organism an aerobe, anaerobe? Please note that aerobic and
      anaerobic are valid descriptors for microbial environments
    title: relationship to oxygen
    from_schema: http://w3id.org/mixs
    is_a: nucleic acid sequence source field
    slot_uri: MIXS:0000015
    multivalued: false
    alias: rel_to_oxygen
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - core
    - MIGS bacteria
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    range: rel_to_oxygen_enum
    recommended: true
  isol_growth_condt:
    name: isol_growth_condt
    description: Publication reference in the form of pubmed ID (pmid), digital object
      identifier (doi) or url for isolation and growth condition specifications of
      the organism/material
    title: isolation and growth condition
    from_schema: http://w3id.org/mixs
    is_a: nucleic acid sequence source field
    string_serialization: '{PMID}|{DOI}|{URL}'
    slot_uri: MIXS:0000003
    multivalued: false
    alias: isol_growth_condt
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMARKS survey
    range: string
    required: true
  samp_collec_device:
    name: samp_collec_device
    description: The device used to collect an environmental sample. This field accepts
      terms listed under environmental sampling device (http://purl.obolibrary.org/obo/ENVO).
      This field also accepts terms listed under specimen collection device (http://purl.obolibrary.org/obo/GENEPIO_0002094).
    title: sample collection device
    from_schema: http://w3id.org/mixs
    is_a: nucleic acid sequence source field
    string_serialization: '{termLabel} {[termID]}|{text}'
    slot_uri: MIXS:0000002
    multivalued: false
    alias: samp_collec_device
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    range: string
    required: false
  samp_collec_method:
    name: samp_collec_method
    description: The method employed for collecting the sample.
    title: sample collection method
    from_schema: http://w3id.org/mixs
    is_a: nucleic acid sequence source field
    string_serialization: '{PMID}|{DOI}|{URL}|{text}'
    slot_uri: MIXS:0001225
    multivalued: false
    alias: samp_collec_method
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    range: string
    required: false
  samp_mat_process:
    name: samp_mat_process
    description: A brief description of any processing applied to the sample during
      or after retrieving the sample from environment, or a link to the relevant protocol(s)
      performed.
    title: sample material processing
    from_schema: http://w3id.org/mixs
    is_a: nucleic acid sequence source field
    string_serialization: '{text}'
    slot_uri: MIXS:0000016
    multivalued: false
    alias: samp_mat_process
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    range: string
    required: false
  samp_size:
    name: samp_size
    description: The total amount or size (volume (ml), mass (g) or area (m2) ) of
      sample collected.
    title: amount or size of sample collected
    from_schema: http://w3id.org/mixs
    is_a: nucleic acid sequence source field
    slot_uri: MIXS:0000001
    multivalued: false
    alias: samp_size
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    range: quantity value
    required: false
  samp_vol_we_dna_ext:
    name: samp_vol_we_dna_ext
    description: 'Volume (ml) or mass (g) of total collected sample processed for
      DNA extraction. Note: total sample collected should be entered under the term
      Sample Size (MIXS:0000001).'
    title: sample volume or weight for DNA extraction
    from_schema: http://w3id.org/mixs
    is_a: nucleic acid sequence source field
    slot_uri: MIXS:0000111
    multivalued: false
    alias: samp_vol_we_dna_ext
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    range: quantity value
    required: false
  nucl_acid_ext:
    name: nucl_acid_ext
    description: A link to a literature reference, electronic resource or a standard
      operating procedure (SOP), that describes the material separation to recover
      the nucleic acid fraction from a sample
    title: nucleic acid extraction
    from_schema: http://w3id.org/mixs
    is_a: sequencing field
    string_serialization: '{PMID}|{DOI}|{URL}'
    slot_uri: MIXS:0000037
    multivalued: false
    alias: nucl_acid_ext
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    range: string
    recommended: true
  nucl_acid_amp:
    name: nucl_acid_amp
    description: A link to a literature reference, electronic resource or a standard
      operating procedure (SOP), that describes the enzymatic amplification (PCR,
      TMA, NASBA) of specific nucleic acids
    title: nucleic acid amplification
    from_schema: http://w3id.org/mixs
    is_a: sequencing field
    string_serialization: '{PMID}|{DOI}|{URL}'
    slot_uri: MIXS:0000038
    multivalued: false
    alias: nucl_acid_amp
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    range: string
    recommended: true
  lib_size:
    name: lib_size
    description: Total number of clones in the library prepared for the project
    title: library size
    from_schema: http://w3id.org/mixs
    is_a: sequencing field
    slot_uri: MIXS:0000039
    multivalued: false
    alias: lib_size
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MISAG
    - MIMAG
    - MIUVIG
    range: integer
    required: false
  lib_reads_seqd:
    name: lib_reads_seqd
    description: Total number of clones sequenced from the library
    title: library reads sequenced
    from_schema: http://w3id.org/mixs
    is_a: sequencing field
    slot_uri: MIXS:0000040
    multivalued: false
    alias: lib_reads_seqd
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MISAG
    - MIMAG
    - MIUVIG
    range: integer
    required: false
  lib_layout:
    name: lib_layout
    description: Specify whether to expect single, paired, or other configuration
      of reads
    title: library layout
    from_schema: http://w3id.org/mixs
    is_a: sequencing field
    slot_uri: MIXS:0000041
    multivalued: false
    alias: lib_layout
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MISAG
    - MIMAG
    - MIUVIG
    range: lib_layout_enum
    required: false
  lib_vector:
    name: lib_vector
    description: Cloning vector type(s) used in construction of libraries
    title: library vector
    from_schema: http://w3id.org/mixs
    is_a: sequencing field
    string_serialization: '{text}'
    slot_uri: MIXS:0000042
    multivalued: false
    alias: lib_vector
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MISAG
    - MIMAG
    - MIUVIG
    range: string
    required: false
  lib_screen:
    name: lib_screen
    description: Specific enrichment or screening methods applied before and/or after
      creating libraries
    title: library screening strategy
    from_schema: http://w3id.org/mixs
    is_a: sequencing field
    string_serialization: '{text}'
    slot_uri: MIXS:0000043
    multivalued: false
    alias: lib_screen
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MISAG
    - MIMAG
    - MIUVIG
    range: string
    required: false
  adapters:
    name: adapters
    description: Adapters provide priming sequences for both amplification and sequencing
      of the sample-library fragments. Both adapters should be reported; in uppercase
      letters
    title: adapters
    from_schema: http://w3id.org/mixs
    is_a: sequencing field
    string_serialization: '{dna};{dna}'
    slot_uri: MIXS:0000048
    multivalued: false
    alias: adapters
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MISAG
    - MIMAG
    - MIUVIG
    range: string
    recommended: true
  seq_meth:
    name: seq_meth
    description: Sequencing machine used. Where possible the term should be taken
      from the OBI list of DNA sequencers (http://purl.obolibrary.org/obo/OBI_0400103).
    title: sequencing method
    from_schema: http://w3id.org/mixs
    is_a: sequencing field
    string_serialization: '{termLabel} {[termID]}|{text}'
    slot_uri: MIXS:0000050
    multivalued: false
    alias: seq_meth
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    range: string
    required: true
  tax_ident:
    name: tax_ident
    description: The phylogenetic marker(s) used to assign an organism name to the
      SAG or MAG
    title: taxonomic identity marker
    from_schema: http://w3id.org/mixs
    is_a: sequencing field
    slot_uri: MIXS:0000053
    multivalued: false
    alias: tax_ident
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MISAG
    - MIMAG
    - MIUVIG
    range: tax_ident_enum
    recommended: true
  assembly_qual:
    name: assembly_qual
    description: 'The assembly quality category is based on sets of criteria outlined
      for each assembly quality category. For MISAG/MIMAG; Finished: Single, validated,
      contiguous sequence per replicon without gaps or ambiguities with a consensus
      error rate equivalent to Q50 or better. High Quality Draft:Multiple fragments
      where gaps span repetitive regions. Presence of the 23S, 16S and 5S rRNA genes
      and at least 18 tRNAs. Medium Quality Draft:Many fragments with little to no
      review of assembly other than reporting of standard assembly statistics. Low
      Quality Draft:Many fragments with little to no review of assembly other than
      reporting of standard assembly statistics. Assembly statistics include, but
      are not limited to total assembly size, number of contigs, contig N50/L50, and
      maximum contig length. For MIUVIG; Finished: Single, validated, contiguous sequence
      per replicon without gaps or ambiguities, with extensive manual review and editing
      to annotate putative gene functions and transcriptional units. High-quality
      draft genome: One or multiple fragments, totaling ≥ 90% of the expected genome
      or replicon sequence or predicted complete. Genome fragment(s): One or multiple
      fragments, totalling < 90% of the expected genome or replicon sequence, or for
      which no genome size could be estimated'
    title: assembly quality
    from_schema: http://w3id.org/mixs
    is_a: sequencing field
    slot_uri: MIXS:0000056
    multivalued: false
    alias: assembly_qual
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MISAG
    - MIMAG
    - MIUVIG
    range: assembly_qual_enum
    required: true
  assembly_name:
    name: assembly_name
    description: Name/version of the assembly provided by the submitter that is used
      in the genome browsers and in the community
    title: assembly name
    from_schema: http://w3id.org/mixs
    is_a: sequencing field
    string_serialization: '{text} {text}'
    slot_uri: MIXS:0000057
    multivalued: false
    alias: assembly_name
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MISAG
    - MIMAG
    - MIUVIG
    range: string
    recommended: true
  assembly_software:
    name: assembly_software
    description: Tool(s) used for assembly, including version number and parameters
    title: assembly software
    from_schema: http://w3id.org/mixs
    is_a: sequencing field
    string_serialization: '{software};{version};{parameters}'
    slot_uri: MIXS:0000058
    multivalued: false
    alias: assembly_software
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MISAG
    - MIMAG
    - MIUVIG
    range: string
    required: true
  annot:
    name: annot
    description: Tool used for annotation, or for cases where annotation was provided
      by a community jamboree or model organism database rather than by a specific
      submitter
    title: annotation
    from_schema: http://w3id.org/mixs
    is_a: sequencing field
    string_serialization: '{text}'
    slot_uri: MIXS:0000059
    multivalued: false
    alias: annot
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MISAG
    - MIMAG
    - MIUVIG
    range: string
    recommended: true
  number_contig:
    name: number_contig
    description: Total number of contigs in the cleaned/submitted assembly that makes
      up a given genome, SAG, MAG, or UViG
    title: number of contigs
    from_schema: http://w3id.org/mixs
    is_a: sequencing field
    slot_uri: MIXS:0000060
    multivalued: false
    alias: number_contig
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MISAG
    - MIMAG
    - MIUVIG
    range: integer
    required: true
  feat_pred:
    name: feat_pred
    description: Method used to predict UViGs features such as ORFs, integration site,
      etc.
    title: feature prediction
    from_schema: http://w3id.org/mixs
    is_a: sequencing field
    string_serialization: '{software};{version};{parameters}'
    slot_uri: MIXS:0000061
    multivalued: false
    alias: feat_pred
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MISAG
    - MIMAG
    - MIUVIG
    range: string
    required: false
  ref_db:
    name: ref_db
    description: List of database(s) used for ORF annotation, along with version number
      and reference to website or publication
    title: reference database(s)
    from_schema: http://w3id.org/mixs
    is_a: sequencing field
    string_serialization: '{database};{version};{reference}'
    slot_uri: MIXS:0000062
    multivalued: false
    alias: ref_db
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MISAG
    - MIMAG
    - MIUVIG
    range: string
    required: false
  sim_search_meth:
    name: sim_search_meth
    description: Tool used to compare ORFs with database, along with version and cutoffs
      used
    title: similarity search method
    from_schema: http://w3id.org/mixs
    is_a: sequencing field
    string_serialization: '{software};{version};{parameters}'
    slot_uri: MIXS:0000063
    multivalued: false
    alias: sim_search_meth
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MISAG
    - MIMAG
    - MIUVIG
    range: string
    required: false
  tax_class:
    name: tax_class
    description: Method used for taxonomic classification, along with reference database
      used, classification rank, and thresholds used to classify new genomes
    title: taxonomic classification
    from_schema: http://w3id.org/mixs
    is_a: sequencing field
    string_serialization: '{text}'
    slot_uri: MIXS:0000064
    multivalued: false
    alias: tax_class
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MISAG
    - MIMAG
    - MIUVIG
    range: string
    required: false
  compl_score:
    name: compl_score
    description: 'Completeness score is typically based on either the fraction of
      markers found as compared to a database or the percent of a genome found as
      compared to a closely related reference genome. High Quality Draft: >90%, Medium
      Quality Draft: >50%, and Low Quality Draft: < 50% should have the indicated
      completeness scores'
    title: completeness score
    from_schema: http://w3id.org/mixs
    is_a: sequencing field
    slot_uri: MIXS:0000069
    multivalued: false
    alias: compl_score
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MISAG
    - MIMAG
    - MIUVIG
    range: string
    required: false
    pattern: ^(high|med|low);(0|([0-9]{1,2})|100)%$
  compl_software:
    name: compl_software
    description: Tools used for completion estimate, i.e. checkm, anvi'o, busco
    title: completeness software
    from_schema: http://w3id.org/mixs
    is_a: sequencing field
    string_serialization: '{software};{version}'
    slot_uri: MIXS:0000070
    multivalued: false
    alias: compl_software
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MISAG
    - MIMAG
    - MIUVIG
    range: string
    required: false
  associated resource:
    name: associated resource
    description: A related resource that is referenced, cited, or otherwise associated
      to the sequence.
    title: relevant electronic resources
    from_schema: http://w3id.org/mixs
    is_a: sequencing field
    string_serialization: '{PMID} | {DOI} | {URL}'
    slot_uri: MIXS:0000091
    multivalued: false
    alias: associated_resource
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    range: string
    recommended: true
  sop:
    name: sop
    description: Standard operating procedures used in assembly and/or annotation
      of genomes, metagenomes or environmental sequences
    title: relevant standard operating procedures
    from_schema: http://w3id.org/mixs
    is_a: sequencing field
    string_serialization: '{PMID}|{DOI}|{URL}'
    slot_uri: MIXS:0000090
    multivalued: false
    alias: sop
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    range: string
    recommended: true
  depth:
    name: depth
    annotations:
      expected_value:
        tag: expected_value
        value: measurement value
    description: The vertical distance below local surface, e.g. for sediment or soil
      samples depth is measured from sediment or soil surface, respectively. Depth
      can be reported as an interval for subsurface samples.
    title: depth
    examples:
    - value: 10 meter
    from_schema: http://w3id.org/mixs
    aliases:
    - depth
    is_a: environment field
    slot_uri: MIXS:0000018
    multivalued: false
    alias: depth
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - built environment
    - air
    - agriculture
    range: quantity value
  alt:
    name: alt
    annotations:
      expected_value:
        tag: expected_value
        value: measurement value
    description: Altitude is a term used to identify heights of objects such as airplanes,
      space shuttles, rockets, atmospheric balloons and heights of places such as
      atmospheric layers and clouds. It is used to measure the height of an object
      which is above the earth's surface. In this context, the altitude measurement
      is the vertical distance between the earth's surface above sea level and the
      sampled position in the air
    title: altitude
    examples:
    - value: 100 meter
    from_schema: http://w3id.org/mixs
    aliases:
    - altitude
    is_a: environment field
    slot_uri: MIXS:0000094
    multivalued: false
    alias: alt
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - built environment
    - air
    - agriculture
    range: quantity value
  elev:
    name: elev
    description: Elevation of the sampling site is its height above a fixed reference
      point, most commonly the mean sea level. Elevation is mainly used when referring
      to points on the earth's surface, while altitude is used for points above the
      surface, such as an aircraft in flight or a spacecraft in orbit.
    title: elevation
    from_schema: http://w3id.org/mixs
    is_a: environment field
    slot_uri: MIXS:0000093
    multivalued: false
    alias: elev
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - built environment
    - air
    - agriculture
    range: quantity value
    required: false
  temp:
    name: temp
    description: Temperature of the sample at the time of sampling.
    title: temperature
    from_schema: http://w3id.org/mixs
    is_a: environment field
    slot_uri: MIXS:0000113
    multivalued: false
    alias: temp
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - built environment
    - air
    - agriculture
    range: quantity value
    required: true
  hcr:
    name: hcr
    description: Main Hydrocarbon Resource type. The term "Hydrocarbon Resource" HCR
      defined as a natural environmental feature containing large amounts of hydrocarbons
      at high concentrations potentially suitable for commercial exploitation. This
      term should not be confused with the Hydrocarbon Occurrence term which also
      includes hydrocarbon-rich environments with currently limited commercial interest
      such as seeps, outcrops, gas hydrates etc. If "other" is specified, please propose
      entry in "additional info" field
    title: hydrocarbon resource type
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000988
    multivalued: false
    alias: hcr
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: hcr_enum
    required: true
  hc_produced:
    name: hc_produced
    description: Main hydrocarbon type produced from resource (i.e. Oil, gas, condensate,
      etc). If "other" is specified, please propose entry in "additional info" field
    title: hydrocarbon type produced
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000989
    multivalued: false
    alias: hc_produced
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: hc_produced_enum
    required: true
  basin:
    name: basin
    description: Name of the basin (e.g. Campos)
    title: basin name
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0000290
    multivalued: false
    alias: basin
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: string
    required: true
  field:
    name: field
    description: Name of the hydrocarbon field (e.g. Albacora)
    title: field name
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0000291
    multivalued: false
    alias: field
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: string
    required: false
  reservoir:
    name: reservoir
    description: Name of the reservoir (e.g. Carapebus)
    title: reservoir name
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0000303
    multivalued: false
    alias: reservoir
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: string
    required: false
  hcr_temp:
    name: hcr_temp
    description: Original temperature of the hydrocarbon resource
    title: hydrocarbon resource original temperature
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{float} - {float} {unit}'
    slot_uri: MIXS:0000393
    multivalued: false
    alias: hcr_temp
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: string
    required: true
  tvdss_of_hcr_temp:
    name: tvdss_of_hcr_temp
    description: True vertical depth subsea (TVDSS) of the hydrocarbon resource where
      the original temperature was measured (e.g. 1345 m).
    title: depth (TVDSS) of hydrocarbon resource temperature
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000394
    multivalued: false
    alias: tvdss_of_hcr_temp
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: quantity value
    required: false
  hcr_pressure:
    name: hcr_pressure
    description: Original pressure of the hydrocarbon resource
    title: hydrocarbon resource original pressure
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{float} - {float} {unit}'
    slot_uri: MIXS:0000395
    multivalued: false
    alias: hcr_pressure
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: string
    required: false
  tvdss_of_hcr_press:
    name: tvdss_of_hcr_press
    description: True vertical depth subsea (TVDSS) of the hydrocarbon resource where
      the original pressure was measured (e.g. 1578 m).
    title: depth (TVDSS) of hydrocarbon resource pressure
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000397
    multivalued: false
    alias: tvdss_of_hcr_press
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: quantity value
    required: false
  permeability:
    name: permeability
    description: 'Measure of the ability of a hydrocarbon resource to allow fluids
      to pass through it. (Additional information: https://en.wikipedia.org/wiki/Permeability_(earth_sciences))'
    title: permeability
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{integer} - {integer} {unit}'
    slot_uri: MIXS:0000404
    multivalued: false
    alias: permeability
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - hydrocarbon resources-cores
    range: string
    required: false
  porosity:
    name: porosity
    description: Porosity of deposited sediment is volume of voids divided by the
      total volume of sample
    title: porosity
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{float} - {float} {unit}'
    slot_uri: MIXS:0000211
    multivalued: false
    alias: porosity
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - sediment
    - hydrocarbon resources-cores
    - agriculture
    range: string
    required: false
  lithology:
    name: lithology
    description: 'Hydrocarbon resource main lithology (Additional information: http://petrowiki.org/Lithology_and_rock_type_determination).
      If "other" is specified, please propose entry in "additional info" field'
    title: lithology
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000990
    multivalued: false
    alias: lithology
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: lithology_enum
    required: false
  depos_env:
    name: depos_env
    description: Main depositional environment (https://en.wikipedia.org/wiki/Depositional_environment).
      If "other" is specified, please propose entry in "additional info" field
    title: depositional environment
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000992
    multivalued: false
    alias: depos_env
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: depos_env_enum
    required: false
  hcr_geol_age:
    name: hcr_geol_age
    description: 'Geological age of hydrocarbon resource (Additional info: https://en.wikipedia.org/wiki/Period_(geology)).
      If "other" is specified, please propose entry in "additional info" field'
    title: hydrocarbon resource geological age
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000993
    multivalued: false
    alias: hcr_geol_age
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: hcr_geol_age_enum
    required: false
  owc_tvdss:
    name: owc_tvdss
    description: Depth of the original oil water contact (OWC) zone (average) (m TVDSS)
    title: oil water contact depth
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000405
    multivalued: false
    alias: owc_tvdss
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - hydrocarbon resources-cores
    range: quantity value
    required: false
  hcr_fw_salinity:
    name: hcr_fw_salinity
    description: Original formation water salinity (prior to secondary recovery e.g.
      Waterflooding) expressed as TDS
    title: formation water salinity
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000406
    multivalued: false
    alias: hcr_fw_salinity
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: quantity value
    required: false
  sulfate_fw:
    name: sulfate_fw
    description: Original sulfate concentration in the hydrocarbon resource
    title: sulfate in formation water
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000407
    multivalued: false
    alias: sulfate_fw
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: quantity value
    required: true
  vfa_fw:
    name: vfa_fw
    description: Original volatile fatty acid concentration in the hydrocarbon resource
    title: vfa in formation water
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000408
    multivalued: false
    alias: vfa_fw
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: quantity value
    required: true
  sr_kerog_type:
    name: sr_kerog_type
    description: 'Origin of kerogen. Type I: Algal (aquatic), Type II: planktonic
      and soft plant material (aquatic or terrestrial), Type III: terrestrial woody/
      fibrous plant material (terrestrial), Type IV: oxidized recycled woody debris
      (terrestrial) (additional information: https://en.wikipedia.org/wiki/Kerogen).
      If "other" is specified, please propose entry in "additional info" field'
    title: source rock kerogen type
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000994
    multivalued: false
    alias: sr_kerog_type
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - hydrocarbon resources-cores
    range: sr_kerog_type_enum
    required: false
  sr_lithology:
    name: sr_lithology
    description: Lithology of source rock (https://en.wikipedia.org/wiki/Source_rock).
      If "other" is specified, please propose entry in "additional info" field
    title: source rock lithology
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000995
    multivalued: false
    alias: sr_lithology
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - hydrocarbon resources-cores
    range: sr_lithology_enum
    required: false
  sr_dep_env:
    name: sr_dep_env
    description: Source rock depositional environment (https://en.wikipedia.org/wiki/Source_rock).
      If "other" is specified, please propose entry in "additional info" field
    title: source rock depositional environment
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000996
    multivalued: false
    alias: sr_dep_env
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - hydrocarbon resources-cores
    range: sr_dep_env_enum
    required: false
  sr_geol_age:
    name: sr_geol_age
    description: 'Geological age of source rock (Additional info: https://en.wikipedia.org/wiki/Period_(geology)).
      If "other" is specified, please propose entry in "additional info" field'
    title: source rock geological age
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000997
    multivalued: false
    alias: sr_geol_age
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - hydrocarbon resources-cores
    range: sr_geol_age_enum
    required: false
  samp_well_name:
    name: samp_well_name
    description: Name of the well (e.g. BXA1123) where sample was taken
    title: sample well name
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0000296
    multivalued: false
    alias: samp_well_name
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: string
    required: false
  win:
    name: win
    description: 'A unique identifier of a well or wellbore. This is part of the Global
      Framework for Well Identification initiative which is compiled by the Professional
      Petroleum Data Management Association (PPDM) in an effort to improve well identification
      systems. (Supporting information: https://ppdm.org/ and http://dl.ppdm.org/dl/690)'
    title: well identification number
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0000297
    multivalued: false
    alias: win
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: string
    required: false
  samp_type:
    name: samp_type
    description: The type of material from which the sample was obtained. For the
      Hydrocarbon package, samples include types like core, rock trimmings, drill
      cuttings, piping section, coupon, pigging debris, solid deposit, produced fluid,
      produced water, injected water, swabs, etc. For the Food Package, samples are
      usually categorized as food, body products or tissues, or environmental material.
      This field accepts terms listed under environmental specimen (http://purl.obolibrary.org/obo/GENEPIO_0001246).
    title: sample type
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{termLabel} {[termID]}'
    slot_uri: MIXS:0000998
    multivalued: false
    alias: samp_type
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - food-food production facility
    - food-farm environment
    range: string
    required: true
  samp_subtype:
    name: samp_subtype
    description: Name of sample sub-type. For example if "sample type" is "Produced
      Water" then subtype could be "Oil Phase" or "Water Phase". If "other" is specified,
      please propose entry in "additional info" field
    title: sample subtype
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000999
    multivalued: false
    alias: samp_subtype
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: samp_subtype_enum
    required: false
  pressure:
    name: pressure
    description: Pressure to which the sample is subject to, in atmospheres
    title: pressure
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000412
    multivalued: false
    alias: pressure
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: quantity value
    required: false
  samp_tvdss:
    name: samp_tvdss
    description: Depth of the sample i.e. The vertical distance between the sea level
      and the sampled position in the subsurface. Depth can be reported as an interval
      for subsurface samples e.g. 1325.75-1362.25 m
    title: sample true vertical depth subsea
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{float}-{float} {unit}'
    slot_uri: MIXS:0000409
    multivalued: false
    alias: samp_tvdss
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - hydrocarbon resources-cores
    range: string
    required: false
  samp_md:
    name: samp_md
    description: In non deviated well, measured depth is equal to the true vertical
      depth, TVD (TVD=TVDSS plus the reference or datum it refers to). In deviated
      wells, the MD is the length of trajectory of the borehole measured from the
      same reference or datum. Common datums used are ground level (GL), drilling
      rig floor (DF), rotary table (RT), kelly bushing (KB) and mean sea level (MSL).
      If "other" is specified, please propose entry in "additional info" field
    title: sample measured depth
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000413
    multivalued: false
    alias: samp_md
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - hydrocarbon resources-cores
    range: samp_md_enum
    required: false
  oxy_stat_samp:
    name: oxy_stat_samp
    description: Oxygenation status of sample
    title: oxygenation status of sample
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000753
    multivalued: false
    alias: oxy_stat_samp
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    - agriculture
    range: oxy_stat_samp_enum
    required: false
  samp_transport_cond:
    name: samp_transport_cond
    description: Sample transport duration (in days or hrs) and temperature the sample
      was exposed to (e.g. 5.5 days; 20 °C)
    title: sample transport conditions
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{float} {unit};{float} {unit}'
    slot_uri: MIXS:0000410
    multivalued: false
    alias: samp_transport_cond
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: string
    required: false
  samp_store_temp:
    name: samp_store_temp
    description: Temperature at which sample was stored, e.g. -80 degree Celsius
    title: sample storage temperature
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000110
    multivalued: false
    alias: samp_store_temp
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    range: quantity value
    required: false
  samp_store_dur:
    name: samp_store_dur
    description: Duration for which the sample was stored
    title: sample storage duration
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{duration}'
    slot_uri: MIXS:0000116
    multivalued: false
    alias: samp_store_dur
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    - agriculture
    range: string
    required: false
  samp_store_loc:
    name: samp_store_loc
    description: Location at which sample was stored, usually name of a specific freezer/room
    title: sample storage location
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0000755
    multivalued: false
    alias: samp_store_loc
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    - agriculture
    range: string
    required: false
  organism_count:
    name: organism_count
    description: 'Total cell count of any organism (or group of organisms) per gram,
      volume or area of sample, should include name of organism followed by count.
      The method that was used for the enumeration (e.g. qPCR, atp, mpn, etc.) Should
      also be provided. (example: total prokaryotes; 3.5e7 cells per ml; qpcr)'
    title: organism count
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000103
    multivalued: true
    alias: organism_count
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - built environment
    - air
    - agriculture
    range: organism_count_enum
    required: false
  org_count_qpcr_info:
    name: org_count_qpcr_info
    description: 'If qpcr was used for the cell count, the target gene name, the primer
      sequence and the cycling conditions should also be provided. (Example: 16S rrna;
      FWD:ACGTAGCTATGACGT REV:GTGCTAGTCGAGTAC; initial denaturation:90C_5min; denaturation:90C_2min;
      annealing:52C_30 sec; elongation:72C_30 sec; 90 C for 1 min; final elongation:72C_5min;
      30 cycles)'
    title: organism count qPCR information
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};FWD:{dna};REV:{dna};initial denaturation:degrees_minutes;denaturation:degrees_minutes;annealing:degrees_minutes;elongation:degrees_minutes;final
      elongation:degrees_minutes; total cycles'
    slot_uri: MIXS:0000099
    multivalued: false
    alias: org_count_qpcr_info
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: string
    required: false
  ph:
    name: ph
    description: Ph measurement of the sample, or liquid portion of sample, or aqueous
      phase of the fluid
    title: pH
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0001001
    multivalued: false
    alias: ph
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - water
    - wastewater_sludge
    - soil
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - food-farm environment
    range: double
    required: false
  salinity:
    name: salinity
    description: The total concentration of all dissolved salts in a liquid or solid
      sample. While salinity can be measured by a complete chemical analysis, this
      method is difficult and time consuming. More often, it is instead derived from
      the conductivity measurement. This is known as practical salinity. These derivations
      compare the specific conductance of the sample to a salinity standard such as
      seawater.
    title: salinity
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000183
    multivalued: false
    alias: salinity
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - water
    - wastewater_sludge
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-farm environment
    - air
    range: quantity value
    required: false
  alkalinity:
    name: alkalinity
    description: Alkalinity, the ability of a solution to neutralize acids to the
      equivalence point of carbonate or bicarbonate
    title: alkalinity
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000421
    multivalued: false
    alias: alkalinity
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - water
    - wastewater_sludge
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: quantity value
    required: false
  alkalinity_method:
    name: alkalinity_method
    description: Method used for alkalinity measurement
    title: alkalinity method
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0000298
    multivalued: false
    alias: alkalinity_method
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - water
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: string
    required: false
  sulfate:
    name: sulfate
    description: Concentration of sulfate in the sample
    title: sulfate
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000423
    multivalued: false
    alias: sulfate
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: quantity value
    required: false
  sulfide:
    name: sulfide
    description: Concentration of sulfide in the sample
    title: sulfide
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000424
    multivalued: false
    alias: sulfide
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: quantity value
    required: false
  tot_sulfur:
    name: tot_sulfur
    description: Concentration of total sulfur in the sample
    title: total sulfur
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000419
    multivalued: false
    alias: tot_sulfur
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: quantity value
    required: false
  nitrate:
    name: nitrate
    description: Concentration of nitrate in the sample
    title: nitrate
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000425
    multivalued: false
    alias: nitrate
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - water
    - wastewater_sludge
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: quantity value
    required: false
  nitrite:
    name: nitrite
    description: Concentration of nitrite in the sample
    title: nitrite
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000426
    multivalued: false
    alias: nitrite
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: quantity value
    required: false
  ammonium:
    name: ammonium
    description: Concentration of ammonium in the sample
    title: ammonium
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000427
    multivalued: false
    alias: ammonium
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: quantity value
    required: false
  tot_nitro:
    name: tot_nitro
    description: 'Total nitrogen concentration of water samples, calculated by: total
      nitrogen = total dissolved nitrogen + particulate nitrogen. Can also be measured
      without filtering, reported as nitrogen'
    title: total nitrogen concentration
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000102
    multivalued: false
    alias: tot_nitro
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - water
    - wastewater_sludge
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - agriculture
    range: quantity value
    required: false
  diss_iron:
    name: diss_iron
    description: Concentration of dissolved iron in the sample
    title: dissolved iron
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000139
    multivalued: false
    alias: diss_iron
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: quantity value
    required: false
  sodium:
    name: sodium
    description: Sodium concentration in the sample
    title: sodium
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000428
    multivalued: false
    alias: sodium
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - water
    - wastewater_sludge
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: quantity value
    required: false
  chloride:
    name: chloride
    description: Concentration of chloride in the sample
    title: chloride
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000429
    multivalued: false
    alias: chloride
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: quantity value
    required: false
  potassium:
    name: potassium
    description: Concentration of potassium in the sample
    title: potassium
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000430
    multivalued: false
    alias: potassium
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: quantity value
    required: false
  magnesium:
    name: magnesium
    description: Concentration of magnesium in the sample
    title: magnesium
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000431
    multivalued: false
    alias: magnesium
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - water
    - sediment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: quantity value
    required: false
  calcium:
    name: calcium
    description: Concentration of calcium in the sample
    title: calcium
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000432
    multivalued: false
    alias: calcium
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: quantity value
    required: false
  tot_iron:
    name: tot_iron
    description: Concentration of total iron in the sample
    title: total iron
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000105
    multivalued: false
    alias: tot_iron
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: quantity value
    required: false
  diss_org_carb:
    name: diss_org_carb
    description: Concentration of dissolved organic carbon in the sample, liquid portion
      of the sample, or aqueous phase of the fluid
    title: dissolved organic carbon
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000433
    multivalued: false
    alias: diss_org_carb
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - water
    - sediment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: quantity value
    required: false
  diss_inorg_carb:
    name: diss_inorg_carb
    description: Dissolved inorganic carbon concentration in the sample, typically
      measured after filtering the sample using a 0.45 micrometer filter
    title: dissolved inorganic carbon
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000434
    multivalued: false
    alias: diss_inorg_carb
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: quantity value
    required: false
  diss_inorg_phosp:
    name: diss_inorg_phosp
    description: Concentration of dissolved inorganic phosphorus in the sample
    title: dissolved inorganic phosphorus
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000106
    multivalued: false
    alias: diss_inorg_phosp
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - water
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: quantity value
    required: false
  tot_phosp:
    name: tot_phosp
    description: 'Total phosphorus concentration in the sample, calculated by: total
      phosphorus = total dissolved phosphorus + particulate phosphorus'
    title: total phosphorus
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000117
    multivalued: false
    alias: tot_phosp
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - water
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: quantity value
    required: false
  suspend_solids:
    name: suspend_solids
    description: Concentration of substances including a wide variety of material,
      such as silt, decaying plant and animal matter; can include multiple substances
    title: suspended solids
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{float} {unit}'
    slot_uri: MIXS:0000150
    multivalued: true
    alias: suspend_solids
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - wastewater_sludge
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: string
    required: false
  density:
    name: density
    description: Density of the sample, which is its mass per unit volume (aka volumetric
      mass density)
    title: density
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000435
    multivalued: false
    alias: density
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: quantity value
    required: false
  diss_carb_dioxide:
    name: diss_carb_dioxide
    description: Concentration of dissolved carbon dioxide in the sample or liquid
      portion of the sample
    title: dissolved carbon dioxide
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000436
    multivalued: false
    alias: diss_carb_dioxide
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: quantity value
    required: false
  diss_oxygen_fluid:
    name: diss_oxygen_fluid
    description: Concentration of dissolved oxygen in the oil field produced fluids
      as it contributes to oxgen-corrosion and microbial activity (e.g. Mic).
    title: dissolved oxygen in fluids
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000438
    multivalued: false
    alias: diss_oxygen_fluid
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: quantity value
    required: false
  vfa:
    name: vfa
    description: Concentration of Volatile Fatty Acids in the sample
    title: volatile fatty acids
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000152
    multivalued: false
    alias: vfa
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: quantity value
    required: false
  benzene:
    name: benzene
    description: Concentration of benzene in the sample
    title: benzene
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000153
    multivalued: false
    alias: benzene
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: quantity value
    required: false
  toluene:
    name: toluene
    description: Concentration of toluene in the sample
    title: toluene
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000154
    multivalued: false
    alias: toluene
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: quantity value
    required: false
  ethylbenzene:
    name: ethylbenzene
    description: Concentration of ethylbenzene in the sample
    title: ethylbenzene
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000155
    multivalued: false
    alias: ethylbenzene
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: quantity value
    required: false
  xylene:
    name: xylene
    description: Concentration of xylene in the sample
    title: xylene
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000156
    multivalued: false
    alias: xylene
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: quantity value
    required: false
  api:
    name: api
    description: 'API gravity is a measure of how heavy or light a petroleum liquid
      is compared to water (source: https://en.wikipedia.org/wiki/API_gravity) (e.g.
      31.1° API)'
    title: API gravity
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000157
    multivalued: false
    alias: api
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: quantity value
    required: true
  tan:
    name: tan
    description: 'Total Acid Number (TAN) is a measurement of acidity that is determined
      by the amount of potassium hydroxide in milligrams that is needed to neutralize
      the acids in one gram of oil. It is an important quality measurement of crude
      oil. (source: https://en.wikipedia.org/wiki/Total_acid_number)'
    title: total acid number
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000120
    multivalued: false
    alias: tan
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: quantity value
    required: false
  viscosity:
    name: viscosity
    description: A measure of oil's resistance to gradual deformation by shear stress or tensile
      stress (e.g. 3.5 cp; 100 °C)
    title: viscosity
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{float} {unit};{float} {unit}'
    slot_uri: MIXS:0000126
    multivalued: false
    alias: viscosity
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: string
    required: false
  pour_point:
    name: pour_point
    description: 'Temperature at which a liquid becomes semi solid and loses its flow
      characteristics. In crude oil a high pour point is generally associated with
      a high paraffin content, typically found in crude deriving from a larger proportion
      of plant material. (soure: https://en.wikipedia.org/wiki/pour_point)'
    title: pour point
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000127
    multivalued: false
    alias: pour_point
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: quantity value
    required: false
  saturates_pc:
    name: saturates_pc
    description: 'Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis
      method that divides crude oil components according to their polarizability
      and polarity. There are three main methods to obtain SARA results. The most
      popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source:
      https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)'
    title: saturates wt%
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{float} {unit}'
    slot_uri: MIXS:0000131
    multivalued: false
    alias: saturates_pc
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: string
    required: false
  aromatics_pc:
    name: aromatics_pc
    description: 'Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis
      method that divides crude oil components according to their polarizability
      and polarity. There are three main methods to obtain SARA results. The most
      popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source:
      https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)'
    title: aromatics wt%
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{float} {unit}'
    slot_uri: MIXS:0000133
    multivalued: false
    alias: aromatics_pc
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: string
    required: false
  resins_pc:
    name: resins_pc
    description: 'Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis
      method that divides crude oil components according to their polarizability
      and polarity. There are three main methods to obtain SARA results. The most
      popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source:
      https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)'
    title: resins wt%
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{float} {unit}'
    slot_uri: MIXS:0000134
    multivalued: false
    alias: resins_pc
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: string
    required: false
  asphaltenes_pc:
    name: asphaltenes_pc
    description: 'Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis
      method that divides crude oil components according to their polarizability
      and polarity. There are three main methods to obtain SARA results. The most
      popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source:
      https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)'
    title: asphaltenes wt%
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{float} {unit}'
    slot_uri: MIXS:0000135
    multivalued: false
    alias: asphaltenes_pc
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: string
    required: false
  misc_param:
    name: misc_param
    description: Any other measurement performed or parameter collected, that is not
      listed here
    title: miscellaneous parameter
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{float} {unit}'
    slot_uri: MIXS:0000752
    multivalued: true
    alias: misc_param
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - air
    - agriculture
    range: string
    required: false
  additional_info:
    name: additional_info
    description: Information that doesn't fit anywhere else. Can also be used to propose
      new entries for fields with controlled vocabulary
    title: additional info
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0000300
    multivalued: false
    alias: additional_info
    owner: hydrocarbon resources-cores MIGS bacteria
    domain_of:
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: string
    required: false