Class: HydrocarbonResources-fluidsSwabsMIGSVirus
Combinatorial checklist Minimal Information about a Genome Sequence: cultured bacteria/archaea with environmental package hydrocarbon resources-fluids_swabs
URI: MIXS:HydrocarbonResources-fluidsSwabsMIGSVirus
Inheritance
- HydrocarbonResources-fluidsSwabs
- HydrocarbonResources-fluidsSwabsMIGSVirus [ MIGSVirus]
Slots
| Name | Cardinality and Range | Description | Inheritance |
|---|---|---|---|
| samp_name | 1..1 String |
A local identifier or name that for the material sample used for extracting n... | MIGSVirus |
| samp_taxon_id | 1..1 String |
NCBI taxon id of the sample | MIGSVirus |
| project_name | 1..1 String |
Name of the project within which the sequencing was organized | MIGSVirus |
| experimental_factor | 0..1 String |
Experimental factors are essentially the variable aspects of an experiment de... | MIGSVirus |
| lat_lon | 1..1 String |
The geographical origin of the sample as defined by latitude and longitude | HydrocarbonResources-fluidsSwabs, MIGSVirus |
| geo_loc_name | 1..1 String |
The geographical origin of the sample as defined by the country or sea name f... | HydrocarbonResources-fluidsSwabs, MIGSVirus |
| collection_date | 1..1 Date |
The time of sampling, either as an instance (single point in time) or interva... | HydrocarbonResources-fluidsSwabs, MIGSVirus |
| neg_cont_type | 0..1 recommended NegContTypeEnum |
The substance or equipment used as a negative control in an investigation | MIGSVirus |
| pos_cont_type | 0..1 recommended String |
The substance, mixture, product, or apparatus used to verify that a process w... | MIGSVirus |
| env_broad_scale | 1..1 String |
Report the major environmental system the sample or specimen came from | HydrocarbonResources-fluidsSwabs, MIGSVirus |
| env_local_scale | 1..1 String |
Report the entity or entities which are in the sample or specimen’s local vic... | HydrocarbonResources-fluidsSwabs, MIGSVirus |
| env_medium | 1..1 String |
Report the environmental material(s) immediately surrounding the sample or sp... | HydrocarbonResources-fluidsSwabs, MIGSVirus |
| subspecf_gen_lin | 0..1 recommended String |
Information about the genetic distinctness of the sequenced organism below th... | MIGSVirus |
| num_replicons | 0..1 recommended Integer |
Reports the number of replicons in a nuclear genome of eukaryotes, in the gen... | MIGSVirus |
| estimated_size | 0..1 String |
The estimated size of the genome prior to sequencing | MIGSVirus |
| ref_biomaterial | 0..1 String |
Primary publication if isolated before genome publication; otherwise, primary... | MIGSVirus |
| source_mat_id | 0..1 recommended String |
A unique identifier assigned to a material sample (as defined by http://rs | MIGSVirus |
| pathogenicity | 0..1 recommended String |
To what is the entity pathogenic | MIGSVirus |
| biotic_relationship | 0..1 BioticRelationshipEnum |
Description of relationship(s) between the subject organism and other organis... | MIGSVirus |
| specific_host | 0..1 recommended String |
Report the host's taxonomic name and/or NCBI taxonomy ID | MIGSVirus |
| host_spec_range | 0..1 recommended Integer |
The range and diversity of host species that an organism is capable of infect... | MIGSVirus |
| host_disease_stat | 0..1 recommended String |
List of diseases with which the host has been diagnosed; can include multiple... | MIGSVirus |
| propagation | 1..1 String |
The type of reproduction from the parent stock | MIGSVirus |
| encoded_traits | 0..1 recommended String |
Should include key traits like antibiotic resistance or xenobiotic degradatio... | MIGSVirus |
| isol_growth_condt | 1..1 String |
Publication reference in the form of pubmed ID (pmid), digital object identif... | MIGSVirus |
| samp_collec_device | 0..1 String |
The device used to collect an environmental sample | MIGSVirus |
| samp_collec_method | 0..1 String |
The method employed for collecting the sample | MIGSVirus |
| samp_mat_process | 0..1 String |
A brief description of any processing applied to the sample during or after r... | MIGSVirus |
| samp_size | 0..1 QuantityValue |
The total amount or size (volume (ml), mass (g) or area (m2) ) of sample coll... | MIGSVirus |
| samp_vol_we_dna_ext | 0..1 QuantityValue |
Volume (ml) or mass (g) of total collected sample processed for DNA extractio... | MIGSVirus |
| virus_enrich_appr | 0..1 recommended VirusEnrichApprEnum |
List of approaches used to enrich the sample for viruses, if any | MIGSVirus |
| nucl_acid_ext | 0..1 recommended String |
A link to a literature reference, electronic resource or a standard operating... | MIGSVirus |
| nucl_acid_amp | 0..1 recommended String |
A link to a literature reference, electronic resource or a standard operating... | MIGSVirus |
| lib_size | 0..1 Integer |
Total number of clones in the library prepared for the project | MIGSVirus |
| lib_reads_seqd | 0..1 Integer |
Total number of clones sequenced from the library | MIGSVirus |
| lib_layout | 0..1 LibLayoutEnum |
Specify whether to expect single, paired, or other configuration of reads | MIGSVirus |
| lib_vector | 0..1 String |
Cloning vector type(s) used in construction of libraries | MIGSVirus |
| lib_screen | 0..1 String |
Specific enrichment or screening methods applied before and/or after creating... | MIGSVirus |
| adapters | 0..1 recommended String |
Adapters provide priming sequences for both amplification and sequencing of t... | MIGSVirus |
| seq_meth | 1..1 String |
Sequencing machine used | MIGSVirus |
| tax_ident | 0..1 recommended TaxIdentEnum |
The phylogenetic marker(s) used to assign an organism name to the SAG or MAG | MIGSVirus |
| assembly_qual | 0..1 AssemblyQualEnum |
The assembly quality category is based on sets of criteria outlined for each ... | MIGSVirus |
| assembly_name | 0..1 recommended String |
Name/version of the assembly provided by the submitter that is used in the ge... | MIGSVirus |
| assembly_software | 1..1 String |
Tool(s) used for assembly, including version number and parameters | MIGSVirus |
| annot | 0..1 recommended String |
Tool used for annotation, or for cases where annotation was provided by a com... | MIGSVirus |
| number_contig | 0..1 Integer |
Total number of contigs in the cleaned/submitted assembly that makes up a giv... | MIGSVirus |
| feat_pred | 0..1 String |
Method used to predict UViGs features such as ORFs, integration site, etc | MIGSVirus |
| ref_db | 0..1 String |
List of database(s) used for ORF annotation, along with version number and re... | MIGSVirus |
| sim_search_meth | 0..1 String |
Tool used to compare ORFs with database, along with version and cutoffs used | MIGSVirus |
| tax_class | 0..1 String |
Method used for taxonomic classification, along with reference database used,... | MIGSVirus |
| compl_score | 0..1 String |
Completeness score is typically based on either the fraction of markers found... | MIGSVirus |
| compl_software | 0..1 String |
Tools used for completion estimate, i | MIGSVirus |
| associated_resource | 0..1 recommended String |
A related resource that is referenced, cited, or otherwise associated to the ... | MIGSVirus |
| sop | 0..1 recommended String |
Standard operating procedures used in assembly and/or annotation of genomes, ... | MIGSVirus |
| depth | 0..1 QuantityValue |
The vertical distance below local surface, e | HydrocarbonResources-fluidsSwabs |
| alt | 0..1 QuantityValue |
Altitude is a term used to identify heights of objects such as airplanes, spa... | HydrocarbonResources-fluidsSwabs |
| elev | 0..1 QuantityValue |
Elevation of the sampling site is its height above a fixed reference point, m... | HydrocarbonResources-fluidsSwabs |
| temp | 1..1 QuantityValue |
Temperature of the sample at the time of sampling | HydrocarbonResources-fluidsSwabs |
| hcr | 1..1 HcrEnum |
Main Hydrocarbon Resource type | HydrocarbonResources-fluidsSwabs |
| hc_produced | 1..1 HcProducedEnum |
Main hydrocarbon type produced from resource (i | HydrocarbonResources-fluidsSwabs |
| basin | 1..1 String |
Name of the basin (e | HydrocarbonResources-fluidsSwabs |
| field | 0..1 String |
Name of the hydrocarbon field (e | HydrocarbonResources-fluidsSwabs |
| reservoir | 0..1 String |
Name of the reservoir (e | HydrocarbonResources-fluidsSwabs |
| hcr_temp | 0..1 String |
Original temperature of the hydrocarbon resource | HydrocarbonResources-fluidsSwabs |
| tvdss_of_hcr_temp | 0..1 QuantityValue |
True vertical depth subsea (TVDSS) of the hydrocarbon resource where the orig... | HydrocarbonResources-fluidsSwabs |
| hcr_pressure | 0..1 String |
Original pressure of the hydrocarbon resource | HydrocarbonResources-fluidsSwabs |
| tvdss_of_hcr_press | 0..1 QuantityValue |
True vertical depth subsea (TVDSS) of the hydrocarbon resource where the orig... | HydrocarbonResources-fluidsSwabs |
| lithology | 0..1 LithologyEnum |
Hydrocarbon resource main lithology (Additional information: http://petrowiki | HydrocarbonResources-fluidsSwabs |
| depos_env | 0..1 DeposEnvEnum |
Main depositional environment (https://en | HydrocarbonResources-fluidsSwabs |
| hcr_geol_age | 0..1 HcrGeolAgeEnum |
Geological age of hydrocarbon resource (Additional info: https://en | HydrocarbonResources-fluidsSwabs |
| hcr_fw_salinity | 0..1 QuantityValue |
Original formation water salinity (prior to secondary recovery e | HydrocarbonResources-fluidsSwabs |
| sulfate_fw | 0..1 QuantityValue |
Original sulfate concentration in the hydrocarbon resource | HydrocarbonResources-fluidsSwabs |
| vfa_fw | 0..1 QuantityValue |
Original volatile fatty acid concentration in the hydrocarbon resource | HydrocarbonResources-fluidsSwabs |
| prod_start_date | 0..1 Date |
Date of field's first production | HydrocarbonResources-fluidsSwabs |
| prod_rate | 0..1 QuantityValue |
Oil and/or gas production rates per well (e | HydrocarbonResources-fluidsSwabs |
| water_prod_rate | 0..1 QuantityValue |
Water production rates per well (e | HydrocarbonResources-fluidsSwabs |
| water_cut | 1..1 QuantityValue |
Current amount of water (%) in a produced fluid stream; or the average of the... | HydrocarbonResources-fluidsSwabs |
| iwf | 1..1 QuantityValue |
Proportion of the produced fluids derived from injected water at the time of ... | HydrocarbonResources-fluidsSwabs |
| add_recov_method | 1..1 String |
Additional (i | HydrocarbonResources-fluidsSwabs |
| iw_bt_date_well | 0..1 Date |
Injection water breakthrough date per well following a secondary and/or terti... | HydrocarbonResources-fluidsSwabs |
| biocide | 0..1 String |
List of biocides (commercial name of product and supplier) and date of admini... | HydrocarbonResources-fluidsSwabs |
| biocide_admin_method | 0..1 String |
Method of biocide administration (dose, frequency, duration, time elapsed bet... | HydrocarbonResources-fluidsSwabs |
| chem_treatment | 0..1 String |
List of chemical compounds administered upstream the sampling location where ... | HydrocarbonResources-fluidsSwabs |
| chem_treat_method | 0..1 String |
Method of chemical administration(dose, frequency, duration, time elapsed bet... | HydrocarbonResources-fluidsSwabs |
| samp_loc_corr_rate | 0..1 String |
Metal corrosion rate is the speed of metal deterioration due to environmental... | HydrocarbonResources-fluidsSwabs |
| samp_well_name | 0..1 String |
Name of the well (e | HydrocarbonResources-fluidsSwabs |
| win | 0..1 String |
A unique identifier of a well or wellbore | HydrocarbonResources-fluidsSwabs |
| samp_type | 1..1 String |
The type of material from which the sample was obtained | HydrocarbonResources-fluidsSwabs |
| samp_subtype | 0..1 SampSubtypeEnum |
Name of sample sub-type | HydrocarbonResources-fluidsSwabs |
| samp_collect_point | 1..1 SampCollectPointEnum |
Sampling point on the asset were sample was collected (e | HydrocarbonResources-fluidsSwabs |
| pressure | 0..1 QuantityValue |
Pressure to which the sample is subject to, in atmospheres | HydrocarbonResources-fluidsSwabs |
| oxy_stat_samp | 0..1 OxyStatSampEnum |
Oxygenation status of sample | HydrocarbonResources-fluidsSwabs |
| samp_preserv | 0..1 String |
Preservative added to the sample (e | HydrocarbonResources-fluidsSwabs |
| samp_transport_cond | 0..1 String |
Sample transport duration (in days or hrs) and temperature the sample was exp... | HydrocarbonResources-fluidsSwabs |
| samp_store_temp | 0..1 QuantityValue |
Temperature at which sample was stored, e | HydrocarbonResources-fluidsSwabs |
| samp_store_dur | 0..1 String |
Duration for which the sample was stored | HydrocarbonResources-fluidsSwabs |
| samp_store_loc | 0..1 String |
Location at which sample was stored, usually name of a specific freezer/room | HydrocarbonResources-fluidsSwabs |
| organism_count | 0..* OrganismCountEnum |
Total cell count of any organism (or group of organisms) per gram, volume or ... | HydrocarbonResources-fluidsSwabs |
| org_count_qpcr_info | 0..1 String |
If qpcr was used for the cell count, the target gene name, the primer sequenc... | HydrocarbonResources-fluidsSwabs |
| ph | 0..1 Double |
Ph measurement of the sample, or liquid portion of sample, or aqueous phase o... | HydrocarbonResources-fluidsSwabs |
| salinity | 0..1 QuantityValue |
The total concentration of all dissolved salts in a liquid or solid sample | HydrocarbonResources-fluidsSwabs |
| alkalinity | 0..1 QuantityValue |
Alkalinity, the ability of a solution to neutralize acids to the equivalence ... | HydrocarbonResources-fluidsSwabs |
| alkalinity_method | 0..1 String |
Method used for alkalinity measurement | HydrocarbonResources-fluidsSwabs |
| sulfate | 1..1 QuantityValue |
Concentration of sulfate in the sample | HydrocarbonResources-fluidsSwabs |
| sulfide | 1..1 QuantityValue |
Concentration of sulfide in the sample | HydrocarbonResources-fluidsSwabs |
| tot_sulfur | 0..1 QuantityValue |
Concentration of total sulfur in the sample | HydrocarbonResources-fluidsSwabs |
| nitrate | 1..1 QuantityValue |
Concentration of nitrate in the sample | HydrocarbonResources-fluidsSwabs |
| nitrite | 0..1 QuantityValue |
Concentration of nitrite in the sample | HydrocarbonResources-fluidsSwabs |
| ammonium | 0..1 QuantityValue |
Concentration of ammonium in the sample | HydrocarbonResources-fluidsSwabs |
| tot_nitro | 0..1 QuantityValue |
Total nitrogen concentration of water samples, calculated by: total nitrogen ... | HydrocarbonResources-fluidsSwabs |
| diss_iron | 0..1 QuantityValue |
Concentration of dissolved iron in the sample | HydrocarbonResources-fluidsSwabs |
| sodium | 0..1 QuantityValue |
Sodium concentration in the sample | HydrocarbonResources-fluidsSwabs |
| chloride | 0..1 QuantityValue |
Concentration of chloride in the sample | HydrocarbonResources-fluidsSwabs |
| potassium | 0..1 QuantityValue |
Concentration of potassium in the sample | HydrocarbonResources-fluidsSwabs |
| magnesium | 0..1 QuantityValue |
Concentration of magnesium in the sample | HydrocarbonResources-fluidsSwabs |
| calcium | 0..1 QuantityValue |
Concentration of calcium in the sample | HydrocarbonResources-fluidsSwabs |
| tot_iron | 0..1 QuantityValue |
Concentration of total iron in the sample | HydrocarbonResources-fluidsSwabs |
| diss_org_carb | 0..1 QuantityValue |
Concentration of dissolved organic carbon in the sample, liquid portion of th... | HydrocarbonResources-fluidsSwabs |
| diss_inorg_carb | 0..1 QuantityValue |
Dissolved inorganic carbon concentration in the sample, typically measured af... | HydrocarbonResources-fluidsSwabs |
| diss_inorg_phosp | 0..1 QuantityValue |
Concentration of dissolved inorganic phosphorus in the sample | HydrocarbonResources-fluidsSwabs |
| tot_phosp | 0..1 QuantityValue |
Total phosphorus concentration in the sample, calculated by: total phosphorus... | HydrocarbonResources-fluidsSwabs |
| suspend_solids | 0..* String |
Concentration of substances including a wide variety of material, such as sil... | HydrocarbonResources-fluidsSwabs |
| density | 0..1 QuantityValue |
Density of the sample, which is its mass per unit volume (aka volumetric mass... | HydrocarbonResources-fluidsSwabs |
| diss_carb_dioxide | 0..1 QuantityValue |
Concentration of dissolved carbon dioxide in the sample or liquid portion of ... | HydrocarbonResources-fluidsSwabs |
| diss_oxygen_fluid | 0..1 QuantityValue |
Concentration of dissolved oxygen in the oil field produced fluids as it cont... | HydrocarbonResources-fluidsSwabs |
| vfa | 0..1 QuantityValue |
Concentration of Volatile Fatty Acids in the sample | HydrocarbonResources-fluidsSwabs |
| benzene | 0..1 QuantityValue |
Concentration of benzene in the sample | HydrocarbonResources-fluidsSwabs |
| toluene | 0..1 QuantityValue |
Concentration of toluene in the sample | HydrocarbonResources-fluidsSwabs |
| ethylbenzene | 0..1 QuantityValue |
Concentration of ethylbenzene in the sample | HydrocarbonResources-fluidsSwabs |
| xylene | 0..1 QuantityValue |
Concentration of xylene in the sample | HydrocarbonResources-fluidsSwabs |
| api | 1..1 QuantityValue |
API gravity is a measure of how heavy or light a petroleum liquid is compared... | HydrocarbonResources-fluidsSwabs |
| tan | 0..1 QuantityValue |
Total Acid Number (TAN) is a measurement of acidity that is determined by th... | HydrocarbonResources-fluidsSwabs |
| viscosity | 0..1 String |
A measure of oil's resistance to gradual deformation by shear stress or t... | HydrocarbonResources-fluidsSwabs |
| pour_point | 0..1 QuantityValue |
Temperature at which a liquid becomes semi solid and loses its flow character... | HydrocarbonResources-fluidsSwabs |
| saturates_pc | 0..1 String |
Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis method that d... | HydrocarbonResources-fluidsSwabs |
| aromatics_pc | 0..1 String |
Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis method that d... | HydrocarbonResources-fluidsSwabs |
| resins_pc | 0..1 String |
Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis method that d... | HydrocarbonResources-fluidsSwabs |
| asphaltenes_pc | 0..1 String |
Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis method that d... | HydrocarbonResources-fluidsSwabs |
| misc_param | 0..* String |
Any other measurement performed or parameter collected, that is not listed he... | HydrocarbonResources-fluidsSwabs |
| additional_info | 0..1 String |
Information that doesn't fit anywhere else | HydrocarbonResources-fluidsSwabs |
Identifier and Mapping Information
Schema Source
- from schema: http://w3id.org/mixs
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | MIXS:HydrocarbonResources-fluidsSwabsMIGSVirus |
| native | MIXS:HydrocarbonResources-fluidsSwabsMIGSVirus |
LinkML Source
Direct
name: hydrocarbon resources-fluids_swabs MIGS virus
description: 'Combinatorial checklist Minimal Information about a Genome Sequence:
cultured bacteria/archaea with environmental package hydrocarbon resources-fluids_swabs'
from_schema: http://w3id.org/mixs
is_a: hydrocarbon resources-fluids_swabs
mixins:
- MIGS virus
Induced
name: hydrocarbon resources-fluids_swabs MIGS virus
description: 'Combinatorial checklist Minimal Information about a Genome Sequence:
cultured bacteria/archaea with environmental package hydrocarbon resources-fluids_swabs'
from_schema: http://w3id.org/mixs
is_a: hydrocarbon resources-fluids_swabs
mixins:
- MIGS virus
attributes:
samp_name:
name: samp_name
description: A local identifier or name that for the material sample used for
extracting nucleic acids, and subsequent sequencing. It can refer either to
the original material collected or to any derived sub-samples. It can have any
format, but we suggest that you make it concise, unique and consistent within
your lab, and as informative as possible. INSDC requires every sample name from
a single Submitter to be unique. Use of a globally unique identifier for the
field source_mat_id is recommended in addition to sample_name.
title: sample name
from_schema: http://w3id.org/mixs
is_a: investigation field
string_serialization: '{text}'
slot_uri: MIXS:0001107
multivalued: false
alias: samp_name
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MIMARKS specimen
- MIMARKS survey
- MISAG
- MIMAG
- MIUVIG
range: string
required: true
samp_taxon_id:
name: samp_taxon_id
description: NCBI taxon id of the sample. Maybe be a single taxon or mixed taxa
sample. Use 'synthetic metagenome’ for mock community/positive controls, or
'blank sample' for negative controls.
title: Taxonomy ID of DNA sample
from_schema: http://w3id.org/mixs
is_a: investigation field
string_serialization: '{text} [NCBI:txid]'
slot_uri: MIXS:0001320
multivalued: false
alias: samp_taxon_id
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MIMARKS specimen
- MIMARKS survey
- MISAG
- MIMAG
- MIUVIG
range: string
required: true
project_name:
name: project_name
description: Name of the project within which the sequencing was organized
title: project name
from_schema: http://w3id.org/mixs
is_a: investigation field
string_serialization: '{text}'
slot_uri: MIXS:0000092
multivalued: false
alias: project_name
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MIMARKS specimen
- MIMARKS survey
- MISAG
- MIMAG
- MIUVIG
range: string
required: true
experimental_factor:
name: experimental_factor
description: Experimental factors are essentially the variable aspects of an experiment
design which can be used to describe an experiment, or set of experiments, in
an increasingly detailed manner. This field accepts ontology terms from Experimental
Factor Ontology (EFO) and/or Ontology for Biomedical Investigations (OBI). For
a browser of EFO (v 2.95) terms, please see http://purl.bioontology.org/ontology/EFO;
for a browser of OBI (v 2018-02-12) terms please see http://purl.bioontology.org/ontology/OBI
title: experimental factor
from_schema: http://w3id.org/mixs
is_a: investigation field
string_serialization: '{termLabel} {[termID]}|{text}'
slot_uri: MIXS:0000008
multivalued: false
alias: experimental_factor
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MIMARKS specimen
- MIMARKS survey
- MISAG
- MIMAG
- MIUVIG
range: string
required: false
lat_lon:
name: lat_lon
description: The geographical origin of the sample as defined by latitude and
longitude. The values should be reported in decimal degrees and in WGS84 system
title: geographic location (latitude and longitude)
from_schema: http://w3id.org/mixs
is_a: environment field
string_serialization: '{float} {float}'
slot_uri: MIXS:0000009
multivalued: false
alias: lat_lon
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- soil
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MIMARKS specimen
- MIMARKS survey
- MISAG
- MIMAG
- MIUVIG
- built environment
- air
- agriculture
range: string
required: true
geo_loc_name:
name: geo_loc_name
description: The geographical origin of the sample as defined by the country or
sea name followed by specific region name. Country or sea names should be chosen
from the INSDC country list (http://insdc.org/country.html), or the GAZ ontology
(http://purl.bioontology.org/ontology/GAZ)
title: geographic location (country and/or sea,region)
from_schema: http://w3id.org/mixs
is_a: environment field
string_serialization: '{term}: {term}, {text}'
slot_uri: MIXS:0000010
multivalued: false
alias: geo_loc_name
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- soil
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MIMARKS specimen
- MIMARKS survey
- MISAG
- MIMAG
- MIUVIG
- built environment
- air
- agriculture
range: string
required: true
collection_date:
name: collection_date
description: 'The time of sampling, either as an instance (single point in time)
or interval. In case no exact time is available, the date/time can be right
truncated i.e. all of these are valid times: 2008-01-23T19:23:10+00:00; 2008-01-23T19:23:10;
2008-01-23; 2008-01; 2008; Except: 2008-01; 2008 all are ISO8601 compliant'
title: collection date
from_schema: http://w3id.org/mixs
is_a: environment field
slot_uri: MIXS:0000011
multivalued: false
alias: collection_date
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- soil
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MIMARKS specimen
- MIMARKS survey
- MISAG
- MIMAG
- MIUVIG
- built environment
- air
- agriculture
range: date
required: true
neg_cont_type:
name: neg_cont_type
description: The substance or equipment used as a negative control in an investigation
title: negative control type
from_schema: http://w3id.org/mixs
is_a: investigation field
slot_uri: MIXS:0001321
multivalued: false
alias: neg_cont_type
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MIMARKS specimen
- MIMARKS survey
- MISAG
- MIMAG
- MIUVIG
range: neg_cont_type_enum
recommended: true
pos_cont_type:
name: pos_cont_type
description: The substance, mixture, product, or apparatus used to verify that
a process which is part of an investigation delivers a true positive.
title: positive control type
from_schema: http://w3id.org/mixs
is_a: investigation field
string_serialization: '{term} or {text}'
slot_uri: MIXS:0001322
multivalued: false
alias: pos_cont_type
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MIMARKS specimen
- MIMARKS survey
- MISAG
- MIMAG
- MIUVIG
range: string
recommended: true
env_broad_scale:
name: env_broad_scale
description: 'Report the major environmental system the sample or specimen came
from. The system(s) identified should have a coarse spatial grain, to provide
the general environmental context of where the sampling was done (e.g. in the
desert or a rainforest). We recommend using subclasses of EnvO’s biome class: http://purl.obolibrary.org/obo/ENVO_00000428.
EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS'
title: broad-scale environmental context
from_schema: http://w3id.org/mixs
is_a: environment field
string_serialization: '{termLabel} {[termID]}'
slot_uri: MIXS:0000012
multivalued: false
alias: env_broad_scale
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- soil
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MIMARKS specimen
- MIMARKS survey
- MISAG
- MIMAG
- MIUVIG
- built environment
- air
- agriculture
range: string
required: true
env_local_scale:
name: env_local_scale
description: 'Report the entity or entities which are in the sample or specimen’s
local vicinity and which you believe have significant causal influences on your
sample or specimen. We recommend using EnvO terms which are of smaller spatial
grain than your entry for env_broad_scale. Terms, such as anatomical sites,
from other OBO Library ontologies which interoperate with EnvO (e.g. UBERON)
are accepted in this field. EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS.'
title: local environmental context
from_schema: http://w3id.org/mixs
is_a: environment field
string_serialization: '{termLabel} {[termID]}'
slot_uri: MIXS:0000013
multivalued: false
alias: env_local_scale
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- soil
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MIMARKS specimen
- MIMARKS survey
- MISAG
- MIMAG
- MIUVIG
- built environment
- air
- agriculture
range: string
required: true
env_medium:
name: env_medium
description: 'Report the environmental material(s) immediately surrounding the
sample or specimen at the time of sampling. We recommend using subclasses of
''environmental material'' (http://purl.obolibrary.org/obo/ENVO_00010483). EnvO
documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS
. Terms from other OBO ontologies are permissible as long as they reference
mass/volume nouns (e.g. air, water, blood) and not discrete, countable entities
(e.g. a tree, a leaf, a table top).'
title: environmental medium
from_schema: http://w3id.org/mixs
is_a: environment field
string_serialization: '{termLabel} {[termID]}'
slot_uri: MIXS:0000014
multivalued: false
alias: env_medium
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- soil
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MIMARKS specimen
- MIMARKS survey
- MISAG
- MIMAG
- MIUVIG
- built environment
- air
- agriculture
range: string
required: true
subspecf_gen_lin:
name: subspecf_gen_lin
description: Information about the genetic distinctness of the sequenced organism
below the subspecies level, e.g., serovar, serotype, biotype, ecotype, or any
relevant genetic typing schemes like Group I plasmid. Subspecies should not
be recorded in this term, but in the NCBI taxonomy. Supply both the lineage
name and the lineage rank separated by a colon, e.g., biovar:abc123.
title: subspecific genetic lineage
from_schema: http://w3id.org/mixs
is_a: nucleic acid sequence source field
string_serialization: '{rank name}:{text}'
slot_uri: MIXS:0000020
multivalued: false
alias: subspecf_gen_lin
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMARKS survey
range: string
recommended: true
num_replicons:
name: num_replicons
description: Reports the number of replicons in a nuclear genome of eukaryotes,
in the genome of a bacterium or archaea or the number of segments in a segmented
virus. Always applied to the haploid chromosome count of a eukaryote
title: number of replicons
from_schema: http://w3id.org/mixs
is_a: nucleic acid sequence source field
slot_uri: MIXS:0000022
multivalued: false
alias: num_replicons
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS virus
range: integer
recommended: true
estimated_size:
name: estimated_size
description: The estimated size of the genome prior to sequencing. Of particular
importance in the sequencing of (eukaryotic) genome which could remain in draft
form for a long or unspecified period.
title: estimated size
from_schema: http://w3id.org/mixs
is_a: nucleic acid sequence source field
string_serialization: '{integer} bp'
slot_uri: MIXS:0000024
multivalued: false
alias: estimated_size
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIUVIG
range: string
required: false
ref_biomaterial:
name: ref_biomaterial
description: Primary publication if isolated before genome publication; otherwise,
primary genome report.
title: reference for biomaterial
from_schema: http://w3id.org/mixs
is_a: nucleic acid sequence source field
string_serialization: '{PMID}|{DOI}|{URL}'
slot_uri: MIXS:0000025
multivalued: false
alias: ref_biomaterial
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MISAG
- MIMAG
- MIUVIG
range: string
required: false
source_mat_id:
name: source_mat_id
description: A unique identifier assigned to a material sample (as defined by
http://rs.tdwg.org/dwc/terms/materialSampleID, and as opposed to a particular
digital record of a material sample) used for extracting nucleic acids, and
subsequent sequencing. The identifier can refer either to the original material
collected or to any derived sub-samples. The INSDC qualifiers /specimen_voucher,
/bio_material, or /culture_collection may or may not share the same value as
the source_mat_id field. For instance, the /specimen_voucher qualifier and source_mat_id
may both contain 'UAM:Herps:14' , referring to both the specimen voucher and
sampled tissue with the same identifier. However, the /culture_collection qualifier
may refer to a value from an initial culture (e.g. ATCC:11775) while source_mat_id
would refer to an identifier from some derived culture from which the nucleic
acids were extracted (e.g. xatc123 or ark:/2154/R2).
title: source material identifiers
from_schema: http://w3id.org/mixs
is_a: nucleic acid sequence source field
string_serialization: '{text}'
slot_uri: MIXS:0000026
multivalued: false
alias: source_mat_id
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MIMARKS specimen
- MIMARKS survey
- MISAG
- MIMAG
- MIUVIG
range: string
recommended: true
pathogenicity:
name: pathogenicity
description: To what is the entity pathogenic
title: known pathogenicity
from_schema: http://w3id.org/mixs
is_a: nucleic acid sequence source field
string_serialization: '{text}'
slot_uri: MIXS:0000027
multivalued: false
alias: pathogenicity
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS virus
- MIUVIG
range: string
recommended: true
biotic_relationship:
name: biotic_relationship
description: Description of relationship(s) between the subject organism and other
organism(s) it is associated with. E.g., parasite on species X; mutualist with
species Y. The target organism is the subject of the relationship, and the other
organism(s) is the object
title: observed biotic relationship
from_schema: http://w3id.org/mixs
is_a: nucleic acid sequence source field
slot_uri: MIXS:0000028
multivalued: false
alias: biotic_relationship
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS virus
- MIMARKS survey
- MIUVIG
range: biotic_relationship_enum
required: false
specific_host:
name: specific_host
description: Report the host's taxonomic name and/or NCBI taxonomy ID.
title: host scientific name
from_schema: http://w3id.org/mixs
is_a: nucleic acid sequence source field
string_serialization: '{text}|{NCBI taxid}'
slot_uri: MIXS:0000029
multivalued: false
alias: specific_host
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIUVIG
range: string
recommended: true
host_spec_range:
name: host_spec_range
description: The range and diversity of host species that an organism is capable
of infecting, defined by NCBI taxonomy identifier.
title: host specificity or range
from_schema: http://w3id.org/mixs
is_a: nucleic acid sequence source field
slot_uri: MIXS:0000030
multivalued: false
alias: host_spec_range
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIUVIG
range: integer
recommended: true
host_disease_stat:
name: host_disease_stat
description: List of diseases with which the host has been diagnosed; can include
multiple diagnoses. The value of the field depends on host; for humans the terms
should be chosen from the DO (Human Disease Ontology) at https://www.disease-ontology.org,
non-human host diseases are free text
title: host disease status
from_schema: http://w3id.org/mixs
is_a: nucleic acid sequence source field
string_serialization: '{termLabel} {[termID]}|{text}'
slot_uri: MIXS:0000031
multivalued: false
alias: host_disease_stat
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS virus
- MIUVIG
range: string
recommended: true
propagation:
name: propagation
description: 'The type of reproduction from the parent stock. Values for this
field is specific to different taxa. For phage or virus: lytic/lysogenic/temperate/obligately
lytic. For plasmids: incompatibility group. For eukaryotes: sexual/asexual.'
title: propagation
from_schema: http://w3id.org/mixs
is_a: nucleic acid sequence source field
string_serialization: '{text}'
slot_uri: MIXS:0000033
multivalued: false
alias: propagation
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- core
- MIGS eukaryote
- MIGS plant
- MIGS virus
range: string
required: true
encoded_traits:
name: encoded_traits
description: Should include key traits like antibiotic resistance or xenobiotic
degradation phenotypes for plasmids, converting genes for phage
title: encoded traits
from_schema: http://w3id.org/mixs
is_a: nucleic acid sequence source field
string_serialization: '{text}'
slot_uri: MIXS:0000034
multivalued: false
alias: encoded_traits
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- core
- MIGS bacteria
- MIGS plant
- MIGS virus
range: string
recommended: true
isol_growth_condt:
name: isol_growth_condt
description: Publication reference in the form of pubmed ID (pmid), digital object
identifier (doi) or url for isolation and growth condition specifications of
the organism/material
title: isolation and growth condition
from_schema: http://w3id.org/mixs
is_a: nucleic acid sequence source field
string_serialization: '{PMID}|{DOI}|{URL}'
slot_uri: MIXS:0000003
multivalued: false
alias: isol_growth_condt
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMARKS survey
range: string
required: true
samp_collec_device:
name: samp_collec_device
description: The device used to collect an environmental sample. This field accepts
terms listed under environmental sampling device (http://purl.obolibrary.org/obo/ENVO).
This field also accepts terms listed under specimen collection device (http://purl.obolibrary.org/obo/GENEPIO_0002094).
title: sample collection device
from_schema: http://w3id.org/mixs
is_a: nucleic acid sequence source field
string_serialization: '{termLabel} {[termID]}|{text}'
slot_uri: MIXS:0000002
multivalued: false
alias: samp_collec_device
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MIMARKS specimen
- MIMARKS survey
- MISAG
- MIMAG
- MIUVIG
range: string
required: false
samp_collec_method:
name: samp_collec_method
description: The method employed for collecting the sample.
title: sample collection method
from_schema: http://w3id.org/mixs
is_a: nucleic acid sequence source field
string_serialization: '{PMID}|{DOI}|{URL}|{text}'
slot_uri: MIXS:0001225
multivalued: false
alias: samp_collec_method
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MIMARKS specimen
- MIMARKS survey
- MISAG
- MIMAG
- MIUVIG
range: string
required: false
samp_mat_process:
name: samp_mat_process
description: A brief description of any processing applied to the sample during
or after retrieving the sample from environment, or a link to the relevant protocol(s)
performed.
title: sample material processing
from_schema: http://w3id.org/mixs
is_a: nucleic acid sequence source field
string_serialization: '{text}'
slot_uri: MIXS:0000016
multivalued: false
alias: samp_mat_process
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MIMARKS specimen
- MIMARKS survey
- MISAG
- MIMAG
- MIUVIG
range: string
required: false
samp_size:
name: samp_size
description: The total amount or size (volume (ml), mass (g) or area (m2) ) of
sample collected.
title: amount or size of sample collected
from_schema: http://w3id.org/mixs
is_a: nucleic acid sequence source field
slot_uri: MIXS:0000001
multivalued: false
alias: samp_size
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MIMARKS specimen
- MIMARKS survey
- MISAG
- MIMAG
- MIUVIG
range: quantity value
required: false
samp_vol_we_dna_ext:
name: samp_vol_we_dna_ext
description: 'Volume (ml) or mass (g) of total collected sample processed for
DNA extraction. Note: total sample collected should be entered under the term
Sample Size (MIXS:0000001).'
title: sample volume or weight for DNA extraction
from_schema: http://w3id.org/mixs
is_a: nucleic acid sequence source field
slot_uri: MIXS:0000111
multivalued: false
alias: samp_vol_we_dna_ext
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MIMARKS specimen
- MIMARKS survey
- MISAG
- MIMAG
- MIUVIG
range: quantity value
required: false
virus_enrich_appr:
name: virus_enrich_appr
description: List of approaches used to enrich the sample for viruses, if any
title: virus enrichment approach
from_schema: http://w3id.org/mixs
is_a: nucleic acid sequence source field
slot_uri: MIXS:0000036
multivalued: false
alias: virus_enrich_appr
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- core
- MIGS virus
- MIUVIG
range: virus_enrich_appr_enum
recommended: true
nucl_acid_ext:
name: nucl_acid_ext
description: A link to a literature reference, electronic resource or a standard
operating procedure (SOP), that describes the material separation to recover
the nucleic acid fraction from a sample
title: nucleic acid extraction
from_schema: http://w3id.org/mixs
is_a: sequencing field
string_serialization: '{PMID}|{DOI}|{URL}'
slot_uri: MIXS:0000037
multivalued: false
alias: nucl_acid_ext
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MIMARKS specimen
- MIMARKS survey
- MISAG
- MIMAG
- MIUVIG
range: string
recommended: true
nucl_acid_amp:
name: nucl_acid_amp
description: A link to a literature reference, electronic resource or a standard
operating procedure (SOP), that describes the enzymatic amplification (PCR,
TMA, NASBA) of specific nucleic acids
title: nucleic acid amplification
from_schema: http://w3id.org/mixs
is_a: sequencing field
string_serialization: '{PMID}|{DOI}|{URL}'
slot_uri: MIXS:0000038
multivalued: false
alias: nucl_acid_amp
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MIMARKS specimen
- MIMARKS survey
- MISAG
- MIMAG
- MIUVIG
range: string
recommended: true
lib_size:
name: lib_size
description: Total number of clones in the library prepared for the project
title: library size
from_schema: http://w3id.org/mixs
is_a: sequencing field
slot_uri: MIXS:0000039
multivalued: false
alias: lib_size
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MIMARKS specimen
- MISAG
- MIMAG
- MIUVIG
range: integer
required: false
lib_reads_seqd:
name: lib_reads_seqd
description: Total number of clones sequenced from the library
title: library reads sequenced
from_schema: http://w3id.org/mixs
is_a: sequencing field
slot_uri: MIXS:0000040
multivalued: false
alias: lib_reads_seqd
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MIMARKS specimen
- MISAG
- MIMAG
- MIUVIG
range: integer
required: false
lib_layout:
name: lib_layout
description: Specify whether to expect single, paired, or other configuration
of reads
title: library layout
from_schema: http://w3id.org/mixs
is_a: sequencing field
slot_uri: MIXS:0000041
multivalued: false
alias: lib_layout
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MIMARKS specimen
- MISAG
- MIMAG
- MIUVIG
range: lib_layout_enum
required: false
lib_vector:
name: lib_vector
description: Cloning vector type(s) used in construction of libraries
title: library vector
from_schema: http://w3id.org/mixs
is_a: sequencing field
string_serialization: '{text}'
slot_uri: MIXS:0000042
multivalued: false
alias: lib_vector
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MIMARKS specimen
- MISAG
- MIMAG
- MIUVIG
range: string
required: false
lib_screen:
name: lib_screen
description: Specific enrichment or screening methods applied before and/or after
creating libraries
title: library screening strategy
from_schema: http://w3id.org/mixs
is_a: sequencing field
string_serialization: '{text}'
slot_uri: MIXS:0000043
multivalued: false
alias: lib_screen
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MIMARKS specimen
- MISAG
- MIMAG
- MIUVIG
range: string
required: false
adapters:
name: adapters
description: Adapters provide priming sequences for both amplification and sequencing
of the sample-library fragments. Both adapters should be reported; in uppercase
letters
title: adapters
from_schema: http://w3id.org/mixs
is_a: sequencing field
string_serialization: '{dna};{dna}'
slot_uri: MIXS:0000048
multivalued: false
alias: adapters
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MIMARKS specimen
- MISAG
- MIMAG
- MIUVIG
range: string
recommended: true
seq_meth:
name: seq_meth
description: Sequencing machine used. Where possible the term should be taken
from the OBI list of DNA sequencers (http://purl.obolibrary.org/obo/OBI_0400103).
title: sequencing method
from_schema: http://w3id.org/mixs
is_a: sequencing field
string_serialization: '{termLabel} {[termID]}|{text}'
slot_uri: MIXS:0000050
multivalued: false
alias: seq_meth
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MIMARKS specimen
- MIMARKS survey
- MISAG
- MIMAG
- MIUVIG
range: string
required: true
tax_ident:
name: tax_ident
description: The phylogenetic marker(s) used to assign an organism name to the
SAG or MAG
title: taxonomic identity marker
from_schema: http://w3id.org/mixs
is_a: sequencing field
slot_uri: MIXS:0000053
multivalued: false
alias: tax_ident
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MISAG
- MIMAG
- MIUVIG
range: tax_ident_enum
recommended: true
assembly_qual:
name: assembly_qual
description: 'The assembly quality category is based on sets of criteria outlined
for each assembly quality category. For MISAG/MIMAG; Finished: Single, validated,
contiguous sequence per replicon without gaps or ambiguities with a consensus
error rate equivalent to Q50 or better. High Quality Draft:Multiple fragments
where gaps span repetitive regions. Presence of the 23S, 16S and 5S rRNA genes
and at least 18 tRNAs. Medium Quality Draft:Many fragments with little to no
review of assembly other than reporting of standard assembly statistics. Low
Quality Draft:Many fragments with little to no review of assembly other than
reporting of standard assembly statistics. Assembly statistics include, but
are not limited to total assembly size, number of contigs, contig N50/L50, and
maximum contig length. For MIUVIG; Finished: Single, validated, contiguous sequence
per replicon without gaps or ambiguities, with extensive manual review and editing
to annotate putative gene functions and transcriptional units. High-quality
draft genome: One or multiple fragments, totaling ≥ 90% of the expected genome
or replicon sequence or predicted complete. Genome fragment(s): One or multiple
fragments, totalling < 90% of the expected genome or replicon sequence, or for
which no genome size could be estimated'
title: assembly quality
from_schema: http://w3id.org/mixs
is_a: sequencing field
slot_uri: MIXS:0000056
multivalued: false
alias: assembly_qual
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MISAG
- MIMAG
- MIUVIG
range: assembly_qual_enum
required: false
assembly_name:
name: assembly_name
description: Name/version of the assembly provided by the submitter that is used
in the genome browsers and in the community
title: assembly name
from_schema: http://w3id.org/mixs
is_a: sequencing field
string_serialization: '{text} {text}'
slot_uri: MIXS:0000057
multivalued: false
alias: assembly_name
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MISAG
- MIMAG
- MIUVIG
range: string
recommended: true
assembly_software:
name: assembly_software
description: Tool(s) used for assembly, including version number and parameters
title: assembly software
from_schema: http://w3id.org/mixs
is_a: sequencing field
string_serialization: '{software};{version};{parameters}'
slot_uri: MIXS:0000058
multivalued: false
alias: assembly_software
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MIMARKS specimen
- MISAG
- MIMAG
- MIUVIG
range: string
required: true
annot:
name: annot
description: Tool used for annotation, or for cases where annotation was provided
by a community jamboree or model organism database rather than by a specific
submitter
title: annotation
from_schema: http://w3id.org/mixs
is_a: sequencing field
string_serialization: '{text}'
slot_uri: MIXS:0000059
multivalued: false
alias: annot
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MISAG
- MIMAG
- MIUVIG
range: string
recommended: true
number_contig:
name: number_contig
description: Total number of contigs in the cleaned/submitted assembly that makes
up a given genome, SAG, MAG, or UViG
title: number of contigs
from_schema: http://w3id.org/mixs
is_a: sequencing field
slot_uri: MIXS:0000060
multivalued: false
alias: number_contig
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MISAG
- MIMAG
- MIUVIG
range: integer
required: false
feat_pred:
name: feat_pred
description: Method used to predict UViGs features such as ORFs, integration site,
etc.
title: feature prediction
from_schema: http://w3id.org/mixs
is_a: sequencing field
string_serialization: '{software};{version};{parameters}'
slot_uri: MIXS:0000061
multivalued: false
alias: feat_pred
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MISAG
- MIMAG
- MIUVIG
range: string
required: false
ref_db:
name: ref_db
description: List of database(s) used for ORF annotation, along with version number
and reference to website or publication
title: reference database(s)
from_schema: http://w3id.org/mixs
is_a: sequencing field
string_serialization: '{database};{version};{reference}'
slot_uri: MIXS:0000062
multivalued: false
alias: ref_db
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MISAG
- MIMAG
- MIUVIG
range: string
required: false
sim_search_meth:
name: sim_search_meth
description: Tool used to compare ORFs with database, along with version and cutoffs
used
title: similarity search method
from_schema: http://w3id.org/mixs
is_a: sequencing field
string_serialization: '{software};{version};{parameters}'
slot_uri: MIXS:0000063
multivalued: false
alias: sim_search_meth
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MISAG
- MIMAG
- MIUVIG
range: string
required: false
tax_class:
name: tax_class
description: Method used for taxonomic classification, along with reference database
used, classification rank, and thresholds used to classify new genomes
title: taxonomic classification
from_schema: http://w3id.org/mixs
is_a: sequencing field
string_serialization: '{text}'
slot_uri: MIXS:0000064
multivalued: false
alias: tax_class
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MISAG
- MIMAG
- MIUVIG
range: string
required: false
compl_score:
name: compl_score
description: 'Completeness score is typically based on either the fraction of
markers found as compared to a database or the percent of a genome found as
compared to a closely related reference genome. High Quality Draft: >90%, Medium
Quality Draft: >50%, and Low Quality Draft: < 50% should have the indicated
completeness scores'
title: completeness score
from_schema: http://w3id.org/mixs
is_a: sequencing field
slot_uri: MIXS:0000069
multivalued: false
alias: compl_score
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MISAG
- MIMAG
- MIUVIG
range: string
required: false
pattern: ^(high|med|low);(0|([0-9]{1,2})|100)%$
compl_software:
name: compl_software
description: Tools used for completion estimate, i.e. checkm, anvi'o, busco
title: completeness software
from_schema: http://w3id.org/mixs
is_a: sequencing field
string_serialization: '{software};{version}'
slot_uri: MIXS:0000070
multivalued: false
alias: compl_software
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MISAG
- MIMAG
- MIUVIG
range: string
required: false
associated resource:
name: associated resource
description: A related resource that is referenced, cited, or otherwise associated
to the sequence.
title: relevant electronic resources
from_schema: http://w3id.org/mixs
is_a: sequencing field
string_serialization: '{PMID} | {DOI} | {URL}'
slot_uri: MIXS:0000091
multivalued: false
alias: associated_resource
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MIMARKS specimen
- MIMARKS survey
- MISAG
- MIMAG
- MIUVIG
range: string
recommended: true
sop:
name: sop
description: Standard operating procedures used in assembly and/or annotation
of genomes, metagenomes or environmental sequences
title: relevant standard operating procedures
from_schema: http://w3id.org/mixs
is_a: sequencing field
string_serialization: '{PMID}|{DOI}|{URL}'
slot_uri: MIXS:0000090
multivalued: false
alias: sop
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MIMARKS specimen
- MIMARKS survey
- MISAG
- MIMAG
- MIUVIG
range: string
recommended: true
depth:
name: depth
annotations:
expected_value:
tag: expected_value
value: measurement value
description: The vertical distance below local surface, e.g. for sediment or soil
samples depth is measured from sediment or soil surface, respectively. Depth
can be reported as an interval for subsurface samples.
title: depth
examples:
- value: 10 meter
from_schema: http://w3id.org/mixs
aliases:
- depth
is_a: environment field
slot_uri: MIXS:0000018
multivalued: false
alias: depth
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- soil
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- core
- built environment
- air
- agriculture
range: quantity value
alt:
name: alt
annotations:
expected_value:
tag: expected_value
value: measurement value
description: Altitude is a term used to identify heights of objects such as airplanes,
space shuttles, rockets, atmospheric balloons and heights of places such as
atmospheric layers and clouds. It is used to measure the height of an object
which is above the earth's surface. In this context, the altitude measurement
is the vertical distance between the earth's surface above sea level and the
sampled position in the air
title: altitude
examples:
- value: 100 meter
from_schema: http://w3id.org/mixs
aliases:
- altitude
is_a: environment field
slot_uri: MIXS:0000094
multivalued: false
alias: alt
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- soil
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- core
- built environment
- air
- agriculture
range: quantity value
elev:
name: elev
annotations:
expected_value:
tag: expected_value
value: measurement value
description: Elevation of the sampling site is its height above a fixed reference
point, most commonly the mean sea level. Elevation is mainly used when referring
to points on the earth's surface, while altitude is used for points above the
surface, such as an aircraft in flight or a spacecraft in orbit.
title: elevation
examples:
- value: 100 meter
from_schema: http://w3id.org/mixs
aliases:
- elevation
is_a: environment field
slot_uri: MIXS:0000093
multivalued: false
alias: elev
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- soil
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- core
- built environment
- air
- agriculture
range: quantity value
temp:
name: temp
description: Temperature of the sample at the time of sampling.
title: temperature
from_schema: http://w3id.org/mixs
is_a: environment field
slot_uri: MIXS:0000113
multivalued: false
alias: temp
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- soil
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- core
- built environment
- air
- agriculture
range: quantity value
required: true
hcr:
name: hcr
description: Main Hydrocarbon Resource type. The term "Hydrocarbon Resource" HCR
defined as a natural environmental feature containing large amounts of hydrocarbons
at high concentrations potentially suitable for commercial exploitation. This
term should not be confused with the Hydrocarbon Occurrence term which also
includes hydrocarbon-rich environments with currently limited commercial interest
such as seeps, outcrops, gas hydrates etc. If "other" is specified, please propose
entry in "additional info" field
title: hydrocarbon resource type
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000988
multivalued: false
alias: hcr
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: hcr_enum
required: true
hc_produced:
name: hc_produced
description: Main hydrocarbon type produced from resource (i.e. Oil, gas, condensate,
etc). If "other" is specified, please propose entry in "additional info" field
title: hydrocarbon type produced
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000989
multivalued: false
alias: hc_produced
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: hc_produced_enum
required: true
basin:
name: basin
description: Name of the basin (e.g. Campos)
title: basin name
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text}'
slot_uri: MIXS:0000290
multivalued: false
alias: basin
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: string
required: true
field:
name: field
description: Name of the hydrocarbon field (e.g. Albacora)
title: field name
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text}'
slot_uri: MIXS:0000291
multivalued: false
alias: field
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: string
required: false
reservoir:
name: reservoir
description: Name of the reservoir (e.g. Carapebus)
title: reservoir name
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text}'
slot_uri: MIXS:0000303
multivalued: false
alias: reservoir
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: string
required: false
hcr_temp:
name: hcr_temp
description: Original temperature of the hydrocarbon resource
title: hydrocarbon resource original temperature
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{float} - {float} {unit}'
slot_uri: MIXS:0000393
multivalued: false
alias: hcr_temp
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: string
required: false
tvdss_of_hcr_temp:
name: tvdss_of_hcr_temp
description: True vertical depth subsea (TVDSS) of the hydrocarbon resource where
the original temperature was measured (e.g. 1345 m).
title: depth (TVDSS) of hydrocarbon resource temperature
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000394
multivalued: false
alias: tvdss_of_hcr_temp
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: false
hcr_pressure:
name: hcr_pressure
description: Original pressure of the hydrocarbon resource
title: hydrocarbon resource original pressure
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{float} - {float} {unit}'
slot_uri: MIXS:0000395
multivalued: false
alias: hcr_pressure
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: string
required: false
tvdss_of_hcr_press:
name: tvdss_of_hcr_press
description: True vertical depth subsea (TVDSS) of the hydrocarbon resource where
the original pressure was measured (e.g. 1578 m).
title: depth (TVDSS) of hydrocarbon resource pressure
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000397
multivalued: false
alias: tvdss_of_hcr_press
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: false
lithology:
name: lithology
description: 'Hydrocarbon resource main lithology (Additional information: http://petrowiki.org/Lithology_and_rock_type_determination).
If "other" is specified, please propose entry in "additional info" field'
title: lithology
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000990
multivalued: false
alias: lithology
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: lithology_enum
required: false
depos_env:
name: depos_env
description: Main depositional environment (https://en.wikipedia.org/wiki/Depositional_environment).
If "other" is specified, please propose entry in "additional info" field
title: depositional environment
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000992
multivalued: false
alias: depos_env
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: depos_env_enum
required: false
hcr_geol_age:
name: hcr_geol_age
description: 'Geological age of hydrocarbon resource (Additional info: https://en.wikipedia.org/wiki/Period_(geology)).
If "other" is specified, please propose entry in "additional info" field'
title: hydrocarbon resource geological age
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000993
multivalued: false
alias: hcr_geol_age
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: hcr_geol_age_enum
required: false
hcr_fw_salinity:
name: hcr_fw_salinity
description: Original formation water salinity (prior to secondary recovery e.g.
Waterflooding) expressed as TDS
title: formation water salinity
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000406
multivalued: false
alias: hcr_fw_salinity
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: false
sulfate_fw:
name: sulfate_fw
description: Original sulfate concentration in the hydrocarbon resource
title: sulfate in formation water
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000407
multivalued: false
alias: sulfate_fw
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: false
vfa_fw:
name: vfa_fw
description: Original volatile fatty acid concentration in the hydrocarbon resource
title: vfa in formation water
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000408
multivalued: false
alias: vfa_fw
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: false
prod_start_date:
name: prod_start_date
description: Date of field's first production
title: production start date
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0001008
multivalued: false
alias: prod_start_date
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- hydrocarbon resources-fluids_swabs
range: date
required: false
prod_rate:
name: prod_rate
description: Oil and/or gas production rates per well (e.g. 524 m3 / day)
title: production rate
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000452
multivalued: false
alias: prod_rate
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- hydrocarbon resources-fluids_swabs
range: quantity value
required: false
water_prod_rate:
name: water_prod_rate
description: Water production rates per well (e.g. 987 m3 / day)
title: water production rate
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000453
multivalued: false
alias: water_prod_rate
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- hydrocarbon resources-fluids_swabs
range: quantity value
required: false
water_cut:
name: water_cut
description: Current amount of water (%) in a produced fluid stream; or the average
of the combined streams
title: water cut
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000454
multivalued: false
alias: water_cut
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- hydrocarbon resources-fluids_swabs
range: quantity value
required: true
iwf:
name: iwf
description: Proportion of the produced fluids derived from injected water at
the time of sampling. (e.g. 87%)
title: injection water fraction
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000455
multivalued: false
alias: iwf
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- hydrocarbon resources-fluids_swabs
range: quantity value
required: true
add_recov_method:
name: add_recov_method
description: Additional (i.e. Secondary, tertiary, etc.) recovery methods deployed
for increase of hydrocarbon recovery from resource and start date for each one
of them. If "other" is specified, please propose entry in "additional info"
field
title: secondary and tertiary recovery methods and start date
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0001009
multivalued: false
alias: add_recov_method
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- hydrocarbon resources-fluids_swabs
range: string
required: true
pattern: ^(Water Injection|Dump Flood|Gas Injection|Wag Immiscible Injection|Polymer
Addition|Surfactant Addition|Not Applicable|other);([\+-]?\d{4}(?!\d{2}\b))((-?)((0[1-9]|1[0-2])(\3([12]\d|0[1-9]|3[01]))?|W([0-4]\d|5[0-2])(-?[1-7])?|(00[1-9]|0[1-9]\d|[12]\d{2}|3([0-5]\d|6[1-6])))([T\s]((([01]\d|2[0-3])((:?)[0-5]\d)?|24\:?00)([\.,]\d+(?!:))?)?(\17[0-5]\d([\.,]\d+)?)?([zZ]|([\+-])([01]\d|2[0-3]):?([0-5]\d)?)?)?)?$
iw_bt_date_well:
name: iw_bt_date_well
description: Injection water breakthrough date per well following a secondary
and/or tertiary recovery
title: injection water breakthrough date of specific well
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0001010
multivalued: false
alias: iw_bt_date_well
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- hydrocarbon resources-fluids_swabs
range: date
required: false
biocide:
name: biocide
description: List of biocides (commercial name of product and supplier) and date
of administration
title: biocide administration
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text};{text};{timestamp}'
slot_uri: MIXS:0001011
multivalued: false
alias: biocide
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- hydrocarbon resources-fluids_swabs
range: string
required: false
biocide_admin_method:
name: biocide_admin_method
description: Method of biocide administration (dose, frequency, duration, time
elapsed between last biociding and sampling) (e.g. 150 mg/l; weekly; 4 hr; 3
days)
title: biocide administration method
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{float} {unit};{Rn/start_time/end_time/duration};{duration}'
slot_uri: MIXS:0000456
multivalued: false
alias: biocide_admin_method
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- hydrocarbon resources-fluids_swabs
range: string
required: false
chem_treatment:
name: chem_treatment
description: List of chemical compounds administered upstream the sampling location
where sampling occurred (e.g. Glycols, H2S scavenger, corrosion and scale inhibitors,
demulsifiers, and other production chemicals etc.). The commercial name of the
product and name of the supplier should be provided. The date of administration
should also be included
title: chemical treatment
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text};{text};{timestamp}'
slot_uri: MIXS:0001012
multivalued: false
alias: chem_treatment
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- hydrocarbon resources-fluids_swabs
range: string
required: false
chem_treat_method:
name: chem_treat_method
description: Method of chemical administration(dose, frequency, duration, time
elapsed between administration and sampling) (e.g. 50 mg/l; twice a week; 1
hr; 0 days)
title: chemical treatment method
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{float} {unit};{Rn/start_time/end_time/duration};{duration};{duration}'
slot_uri: MIXS:0000457
multivalued: false
alias: chem_treat_method
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- hydrocarbon resources-fluids_swabs
range: string
required: false
samp_loc_corr_rate:
name: samp_loc_corr_rate
description: Metal corrosion rate is the speed of metal deterioration due to environmental
conditions. As environmental conditions change corrosion rates change accordingly.
Therefore, long term corrosion rates are generally more informative than short
term rates and for that reason they are preferred during reporting. In the case
of suspected MIC, corrosion rate measurements at the time of sampling might
provide insights into the involvement of certain microbial community members
in MIC as well as potential microbial interplays
title: corrosion rate at sample location
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{float} - {float} {unit}'
slot_uri: MIXS:0000136
multivalued: false
alias: samp_loc_corr_rate
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- hydrocarbon resources-fluids_swabs
range: string
required: false
samp_well_name:
name: samp_well_name
description: Name of the well (e.g. BXA1123) where sample was taken
title: sample well name
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text}'
slot_uri: MIXS:0000296
multivalued: false
alias: samp_well_name
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: string
required: false
win:
name: win
description: 'A unique identifier of a well or wellbore. This is part of the Global
Framework for Well Identification initiative which is compiled by the Professional
Petroleum Data Management Association (PPDM) in an effort to improve well identification
systems. (Supporting information: https://ppdm.org/ and http://dl.ppdm.org/dl/690)'
title: well identification number
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text}'
slot_uri: MIXS:0000297
multivalued: false
alias: win
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: string
required: false
samp_type:
name: samp_type
description: The type of material from which the sample was obtained. For the
Hydrocarbon package, samples include types like core, rock trimmings, drill
cuttings, piping section, coupon, pigging debris, solid deposit, produced fluid,
produced water, injected water, swabs, etc. For the Food Package, samples are
usually categorized as food, body products or tissues, or environmental material.
This field accepts terms listed under environmental specimen (http://purl.obolibrary.org/obo/GENEPIO_0001246).
title: sample type
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{termLabel} {[termID]}'
slot_uri: MIXS:0000998
multivalued: false
alias: samp_type
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- food-food production facility
- food-farm environment
range: string
required: true
samp_subtype:
name: samp_subtype
description: Name of sample sub-type. For example if "sample type" is "Produced
Water" then subtype could be "Oil Phase" or "Water Phase". If "other" is specified,
please propose entry in "additional info" field
title: sample subtype
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000999
multivalued: false
alias: samp_subtype
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: samp_subtype_enum
required: false
samp_collect_point:
name: samp_collect_point
description: Sampling point on the asset were sample was collected (e.g. Wellhead,
storage tank, separator, etc). If "other" is specified, please propose entry
in "additional info" field
title: sample collection point
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0001015
multivalued: false
alias: samp_collect_point
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- hydrocarbon resources-fluids_swabs
range: samp_collect_point_enum
required: true
pressure:
name: pressure
description: Pressure to which the sample is subject to, in atmospheres
title: pressure
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000412
multivalued: false
alias: pressure
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- water
- sediment
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: false
oxy_stat_samp:
name: oxy_stat_samp
description: Oxygenation status of sample
title: oxygenation status of sample
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000753
multivalued: false
alias: oxy_stat_samp
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- air
- agriculture
range: oxy_stat_samp_enum
required: false
samp_preserv:
name: samp_preserv
description: Preservative added to the sample (e.g. Rnalater, alcohol, formaldehyde,
etc.). Where appropriate include volume added (e.g. Rnalater; 2 ml)
title: preservative added to sample
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text};{float} {unit}'
slot_uri: MIXS:0000463
multivalued: false
alias: samp_preserv
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- hydrocarbon resources-fluids_swabs
range: string
required: false
samp_transport_cond:
name: samp_transport_cond
description: Sample transport duration (in days or hrs) and temperature the sample
was exposed to (e.g. 5.5 days; 20 °C)
title: sample transport conditions
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{float} {unit};{float} {unit}'
slot_uri: MIXS:0000410
multivalued: false
alias: samp_transport_cond
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: string
required: false
samp_store_temp:
name: samp_store_temp
description: Temperature at which sample was stored, e.g. -80 degree Celsius
title: sample storage temperature
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000110
multivalued: false
alias: samp_store_temp
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- air
range: quantity value
required: false
samp_store_dur:
name: samp_store_dur
description: Duration for which the sample was stored
title: sample storage duration
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{duration}'
slot_uri: MIXS:0000116
multivalued: false
alias: samp_store_dur
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- air
- agriculture
range: string
required: false
samp_store_loc:
name: samp_store_loc
description: Location at which sample was stored, usually name of a specific freezer/room
title: sample storage location
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text}'
slot_uri: MIXS:0000755
multivalued: false
alias: samp_store_loc
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- air
- agriculture
range: string
required: false
organism_count:
name: organism_count
description: 'Total cell count of any organism (or group of organisms) per gram,
volume or area of sample, should include name of organism followed by count.
The method that was used for the enumeration (e.g. qPCR, atp, mpn, etc.) Should
also be provided. (example: total prokaryotes; 3.5e7 cells per ml; qpcr)'
title: organism count
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000103
multivalued: true
alias: organism_count
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- built environment
- air
- agriculture
range: organism_count_enum
required: false
org_count_qpcr_info:
name: org_count_qpcr_info
description: 'If qpcr was used for the cell count, the target gene name, the primer
sequence and the cycling conditions should also be provided. (Example: 16S rrna;
FWD:ACGTAGCTATGACGT REV:GTGCTAGTCGAGTAC; initial denaturation:90C_5min; denaturation:90C_2min;
annealing:52C_30 sec; elongation:72C_30 sec; 90 C for 1 min; final elongation:72C_5min;
30 cycles)'
title: organism count qPCR information
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text};FWD:{dna};REV:{dna};initial denaturation:degrees_minutes;denaturation:degrees_minutes;annealing:degrees_minutes;elongation:degrees_minutes;final
elongation:degrees_minutes; total cycles'
slot_uri: MIXS:0000099
multivalued: false
alias: org_count_qpcr_info
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: string
required: false
ph:
name: ph
description: Ph measurement of the sample, or liquid portion of sample, or aqueous
phase of the fluid
title: pH
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0001001
multivalued: false
alias: ph
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- water
- wastewater_sludge
- soil
- sediment
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- food-farm environment
range: double
required: false
salinity:
name: salinity
description: The total concentration of all dissolved salts in a liquid or solid
sample. While salinity can be measured by a complete chemical analysis, this
method is difficult and time consuming. More often, it is instead derived from
the conductivity measurement. This is known as practical salinity. These derivations
compare the specific conductance of the sample to a salinity standard such as
seawater.
title: salinity
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000183
multivalued: false
alias: salinity
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- water
- wastewater_sludge
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-farm environment
- air
range: quantity value
required: false
alkalinity:
name: alkalinity
description: Alkalinity, the ability of a solution to neutralize acids to the
equivalence point of carbonate or bicarbonate
title: alkalinity
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000421
multivalued: false
alias: alkalinity
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- water
- wastewater_sludge
- sediment
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: false
alkalinity_method:
name: alkalinity_method
description: Method used for alkalinity measurement
title: alkalinity method
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text}'
slot_uri: MIXS:0000298
multivalued: false
alias: alkalinity_method
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- water
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: string
required: false
sulfate:
name: sulfate
description: Concentration of sulfate in the sample
title: sulfate
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000423
multivalued: false
alias: sulfate
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- water
- sediment
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: true
sulfide:
name: sulfide
description: Concentration of sulfide in the sample
title: sulfide
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000424
multivalued: false
alias: sulfide
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- water
- sediment
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: true
tot_sulfur:
name: tot_sulfur
description: Concentration of total sulfur in the sample
title: total sulfur
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000419
multivalued: false
alias: tot_sulfur
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: false
nitrate:
name: nitrate
description: Concentration of nitrate in the sample
title: nitrate
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000425
multivalued: false
alias: nitrate
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- water
- wastewater_sludge
- sediment
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: true
nitrite:
name: nitrite
description: Concentration of nitrite in the sample
title: nitrite
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000426
multivalued: false
alias: nitrite
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- water
- sediment
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: false
ammonium:
name: ammonium
description: Concentration of ammonium in the sample
title: ammonium
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000427
multivalued: false
alias: ammonium
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- water
- sediment
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: false
tot_nitro:
name: tot_nitro
description: 'Total nitrogen concentration of water samples, calculated by: total
nitrogen = total dissolved nitrogen + particulate nitrogen. Can also be measured
without filtering, reported as nitrogen'
title: total nitrogen concentration
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000102
multivalued: false
alias: tot_nitro
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- water
- wastewater_sludge
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- agriculture
range: quantity value
required: false
diss_iron:
name: diss_iron
description: Concentration of dissolved iron in the sample
title: dissolved iron
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000139
multivalued: false
alias: diss_iron
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: false
sodium:
name: sodium
description: Sodium concentration in the sample
title: sodium
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000428
multivalued: false
alias: sodium
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- water
- wastewater_sludge
- sediment
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: false
chloride:
name: chloride
description: Concentration of chloride in the sample
title: chloride
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000429
multivalued: false
alias: chloride
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- water
- sediment
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: false
potassium:
name: potassium
description: Concentration of potassium in the sample
title: potassium
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000430
multivalued: false
alias: potassium
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- water
- sediment
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: false
magnesium:
name: magnesium
description: Concentration of magnesium in the sample
title: magnesium
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000431
multivalued: false
alias: magnesium
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- water
- sediment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: false
calcium:
name: calcium
description: Concentration of calcium in the sample
title: calcium
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000432
multivalued: false
alias: calcium
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- water
- sediment
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: false
tot_iron:
name: tot_iron
description: Concentration of total iron in the sample
title: total iron
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000105
multivalued: false
alias: tot_iron
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: false
diss_org_carb:
name: diss_org_carb
description: Concentration of dissolved organic carbon in the sample, liquid portion
of the sample, or aqueous phase of the fluid
title: dissolved organic carbon
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000433
multivalued: false
alias: diss_org_carb
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- water
- sediment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: false
diss_inorg_carb:
name: diss_inorg_carb
description: Dissolved inorganic carbon concentration in the sample, typically
measured after filtering the sample using a 0.45 micrometer filter
title: dissolved inorganic carbon
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000434
multivalued: false
alias: diss_inorg_carb
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- water
- sediment
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: false
diss_inorg_phosp:
name: diss_inorg_phosp
description: Concentration of dissolved inorganic phosphorus in the sample
title: dissolved inorganic phosphorus
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000106
multivalued: false
alias: diss_inorg_phosp
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- water
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: false
tot_phosp:
name: tot_phosp
description: 'Total phosphorus concentration in the sample, calculated by: total
phosphorus = total dissolved phosphorus + particulate phosphorus'
title: total phosphorus
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000117
multivalued: false
alias: tot_phosp
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- water
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: false
suspend_solids:
name: suspend_solids
description: Concentration of substances including a wide variety of material,
such as silt, decaying plant and animal matter; can include multiple substances
title: suspended solids
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text};{float} {unit}'
slot_uri: MIXS:0000150
multivalued: true
alias: suspend_solids
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- wastewater_sludge
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: string
required: false
density:
name: density
description: Density of the sample, which is its mass per unit volume (aka volumetric
mass density)
title: density
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000435
multivalued: false
alias: density
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- water
- sediment
- miscellaneous natural or artificial environment
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: false
diss_carb_dioxide:
name: diss_carb_dioxide
description: Concentration of dissolved carbon dioxide in the sample or liquid
portion of the sample
title: dissolved carbon dioxide
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000436
multivalued: false
alias: diss_carb_dioxide
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- water
- sediment
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: false
diss_oxygen_fluid:
name: diss_oxygen_fluid
description: Concentration of dissolved oxygen in the oil field produced fluids
as it contributes to oxgen-corrosion and microbial activity (e.g. Mic).
title: dissolved oxygen in fluids
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000438
multivalued: false
alias: diss_oxygen_fluid
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: false
vfa:
name: vfa
description: Concentration of Volatile Fatty Acids in the sample
title: volatile fatty acids
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000152
multivalued: false
alias: vfa
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: false
benzene:
name: benzene
description: Concentration of benzene in the sample
title: benzene
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000153
multivalued: false
alias: benzene
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: false
toluene:
name: toluene
description: Concentration of toluene in the sample
title: toluene
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000154
multivalued: false
alias: toluene
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: false
ethylbenzene:
name: ethylbenzene
description: Concentration of ethylbenzene in the sample
title: ethylbenzene
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000155
multivalued: false
alias: ethylbenzene
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: false
xylene:
name: xylene
description: Concentration of xylene in the sample
title: xylene
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000156
multivalued: false
alias: xylene
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: false
api:
name: api
description: 'API gravity is a measure of how heavy or light a petroleum liquid
is compared to water (source: https://en.wikipedia.org/wiki/API_gravity) (e.g.
31.1° API)'
title: API gravity
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000157
multivalued: false
alias: api
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: true
tan:
name: tan
description: 'Total Acid Number (TAN) is a measurement of acidity that is determined
by the amount of potassium hydroxide in milligrams that is needed to neutralize
the acids in one gram of oil. It is an important quality measurement of crude
oil. (source: https://en.wikipedia.org/wiki/Total_acid_number)'
title: total acid number
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000120
multivalued: false
alias: tan
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: false
viscosity:
name: viscosity
description: A measure of oil's resistance to gradual deformation by shear stress or tensile
stress (e.g. 3.5 cp; 100 °C)
title: viscosity
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{float} {unit};{float} {unit}'
slot_uri: MIXS:0000126
multivalued: false
alias: viscosity
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: string
required: false
pour_point:
name: pour_point
description: 'Temperature at which a liquid becomes semi solid and loses its flow
characteristics. In crude oil a high pour point is generally associated with
a high paraffin content, typically found in crude deriving from a larger proportion
of plant material. (soure: https://en.wikipedia.org/wiki/pour_point)'
title: pour point
from_schema: http://w3id.org/mixs
is_a: core field
slot_uri: MIXS:0000127
multivalued: false
alias: pour_point
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: quantity value
required: false
saturates_pc:
name: saturates_pc
description: 'Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis
method that divides crude oil components according to their polarizability
and polarity. There are three main methods to obtain SARA results. The most
popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source:
https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)'
title: saturates wt%
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text};{float} {unit}'
slot_uri: MIXS:0000131
multivalued: false
alias: saturates_pc
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: string
required: false
aromatics_pc:
name: aromatics_pc
description: 'Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis
method that divides crude oil components according to their polarizability
and polarity. There are three main methods to obtain SARA results. The most
popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source:
https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)'
title: aromatics wt%
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text};{float} {unit}'
slot_uri: MIXS:0000133
multivalued: false
alias: aromatics_pc
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: string
required: false
resins_pc:
name: resins_pc
description: 'Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis
method that divides crude oil components according to their polarizability
and polarity. There are three main methods to obtain SARA results. The most
popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source:
https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)'
title: resins wt%
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text};{float} {unit}'
slot_uri: MIXS:0000134
multivalued: false
alias: resins_pc
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: string
required: false
asphaltenes_pc:
name: asphaltenes_pc
description: 'Saturate, Aromatic, Resin and Asphaltene (SARA) is an analysis
method that divides crude oil components according to their polarizability
and polarity. There are three main methods to obtain SARA results. The most
popular one is known as the Iatroscan TLC-FID and is referred to as IP-143 (source:
https://en.wikipedia.org/wiki/Saturate,_aromatic,_resin_and_asphaltene)'
title: asphaltenes wt%
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text};{float} {unit}'
slot_uri: MIXS:0000135
multivalued: false
alias: asphaltenes_pc
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: string
required: false
misc_param:
name: misc_param
description: Any other measurement performed or parameter collected, that is not
listed here
title: miscellaneous parameter
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text};{float} {unit}'
slot_uri: MIXS:0000752
multivalued: true
alias: misc_param
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- soil
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- air
- agriculture
range: string
required: false
additional_info:
name: additional_info
description: Information that doesn't fit anywhere else. Can also be used to propose
new entries for fields with controlled vocabulary
title: additional info
from_schema: http://w3id.org/mixs
is_a: core field
string_serialization: '{text}'
slot_uri: MIXS:0000300
multivalued: false
alias: additional_info
owner: hydrocarbon resources-fluids_swabs MIGS virus
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: string
required: false