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Class: MicrobialMatBiofilm

microbial mat/biofilm

URI: MIXS:MicrobialMatBiofilm

Inheritance

Slots

Name Cardinality and Range Description Inheritance
lat_lon 0..1
String		 The geographical origin of the sample as defined by latitude and longitude direct
depth 0..1
QuantityValue		 The vertical distance below local surface, e direct
alt 0..1
QuantityValue		 Altitude is a term used to identify heights of objects such as airplanes, spa... direct
elev 0..1
QuantityValue		 Elevation of the sampling site is its height above a fixed reference point, m... direct
temp 0..1
QuantityValue		 Temperature of the sample at the time of sampling direct
geo_loc_name 0..1
String		 The geographical origin of the sample as defined by the country or sea name f... direct
collection_date 0..1
Date		 The time of sampling, either as an instance (single point in time) or interva... direct
env_broad_scale 0..1
String		 Report the major environmental system the sample or specimen came from direct
env_local_scale 0..1
String		 Report the entity or entities which are in the sample or specimen’s local vic... direct
env_medium 0..1
String		 Report the environmental material(s) immediately surrounding the sample or sp... direct
alkalinity 0..1
QuantityValue		 Alkalinity, the ability of a solution to neutralize acids to the equivalence ... direct
alkyl_diethers 0..1
QuantityValue		 Concentration of alkyl diethers direct
aminopept_act 0..1
QuantityValue		 Measurement of aminopeptidase activity direct
ammonium 0..1
QuantityValue		 Concentration of ammonium in the sample direct
bacteria_carb_prod 0..1
QuantityValue		 Measurement of bacterial carbon production direct
biomass 0..*
String		 Amount of biomass; should include the name for the part of biomass measured, ... direct
bishomohopanol 0..1
QuantityValue		 Concentration of bishomohopanol direct
bromide 0..1
QuantityValue		 Concentration of bromide direct
calcium 0..1
QuantityValue		 Concentration of calcium in the sample direct
carb_nitro_ratio 0..1
QuantityValue		 Ratio of amount or concentrations of carbon to nitrogen direct
chem_administration 0..*
String		 List of chemical compounds administered to the host or site where sampling oc... direct
chloride 0..1
QuantityValue		 Concentration of chloride in the sample direct
chlorophyll 0..1
QuantityValue		 Concentration of chlorophyll direct
diether_lipids 0..*
String		 Concentration of diether lipids; can include multiple types of diether lipids direct
diss_carb_dioxide 0..1
QuantityValue		 Concentration of dissolved carbon dioxide in the sample or liquid portion of ... direct
diss_hydrogen 0..1
QuantityValue		 Concentration of dissolved hydrogen direct
diss_inorg_carb 0..1
QuantityValue		 Dissolved inorganic carbon concentration in the sample, typically measured af... direct
diss_org_carb 0..1
QuantityValue		 Concentration of dissolved organic carbon in the sample, liquid portion of th... direct
diss_org_nitro 0..1
QuantityValue		 Dissolved organic nitrogen concentration measured as; total dissolved nitroge... direct
diss_oxygen 0..1
QuantityValue		 Concentration of dissolved oxygen direct
glucosidase_act 0..1
QuantityValue		 Measurement of glucosidase activity direct
magnesium 0..1
QuantityValue		 Concentration of magnesium in the sample direct
mean_frict_vel 0..1
QuantityValue		 Measurement of mean friction velocity direct
mean_peak_frict_vel 0..1
QuantityValue		 Measurement of mean peak friction velocity direct
methane 0..1
QuantityValue		 Methane (gas) amount or concentration at the time of sampling direct
misc_param 0..*
String		 Any other measurement performed or parameter collected, that is not listed he... direct
n_alkanes 0..*
String		 Concentration of n-alkanes; can include multiple n-alkanes direct
nitrate 0..1
QuantityValue		 Concentration of nitrate in the sample direct
nitrite 0..1
QuantityValue		 Concentration of nitrite in the sample direct
nitro 0..1
QuantityValue		 Concentration of nitrogen (total) direct
org_carb 0..1
QuantityValue		 Concentration of organic carbon direct
org_matter 0..1
QuantityValue		 Concentration of organic matter direct
org_nitro 0..1
QuantityValue		 Concentration of organic nitrogen direct
organism_count 0..*
OrganismCountEnum		 Total cell count of any organism (or group of organisms) per gram, volume or ... direct
oxy_stat_samp 0..1
OxyStatSampEnum		 Oxygenation status of sample direct
ph 0..1
Double		 Ph measurement of the sample, or liquid portion of sample, or aqueous phase o... direct
part_org_carb 0..1
QuantityValue		 Concentration of particulate organic carbon direct
perturbation 0..*
String		 Type of perturbation, e direct
petroleum_hydrocarb 0..1
QuantityValue		 Concentration of petroleum hydrocarbon direct
phaeopigments 0..*
String		 Concentration of phaeopigments; can include multiple phaeopigments direct
phosphate 0..1
QuantityValue		 Concentration of phosphate direct
phosplipid_fatt_acid 0..*
String		 Concentration of phospholipid fatty acids; can include multiple values direct
potassium 0..1
QuantityValue		 Concentration of potassium in the sample direct
pressure 0..1
QuantityValue		 Pressure to which the sample is subject to, in atmospheres direct
redox_potential 0..1
QuantityValue		 Redox potential, measured relative to a hydrogen cell, indicating oxidation o... direct
salinity 0..1
QuantityValue		 The total concentration of all dissolved salts in a liquid or solid sample direct
samp_store_dur 0..1
String		 Duration for which the sample was stored direct
samp_store_loc 0..1
String		 Location at which sample was stored, usually name of a specific freezer/room direct
samp_store_temp 0..1
QuantityValue		 Temperature at which sample was stored, e direct
silicate 0..1
QuantityValue		 Concentration of silicate direct
sodium 0..1
QuantityValue		 Sodium concentration in the sample direct
sulfate 0..1
QuantityValue		 Concentration of sulfate in the sample direct
sulfide 0..1
QuantityValue		 Concentration of sulfide in the sample direct
tot_carb 0..1
QuantityValue		 Total carbon content direct
tot_nitro_content 0..1
QuantityValue		 Total nitrogen content of the sample direct
tot_org_carb 0..1
QuantityValue		 Definition for soil: total organic carbon content of the soil, definition oth... direct
turbidity 0..1
QuantityValue		 Measure of the amount of cloudiness or haziness in water caused by individual... direct
water_content 0..1
QuantityValue		 Water content measurement direct

Identifier and Mapping Information

Schema Source

  • from schema: http://w3id.org/mixs

Mappings

Mapping Type Mapped Value
self MIXS:MicrobialMatBiofilm
native MIXS:MicrobialMatBiofilm

LinkML Source

Direct

name: microbial mat_biofilm
description: microbial mat/biofilm
from_schema: http://w3id.org/mixs
slots:
- lat_lon
- depth
- alt
- elev
- temp
- geo_loc_name
- collection_date
- env_broad_scale
- env_local_scale
- env_medium
- alkalinity
- alkyl_diethers
- aminopept_act
- ammonium
- bacteria_carb_prod
- biomass
- bishomohopanol
- bromide
- calcium
- carb_nitro_ratio
- chem_administration
- chloride
- chlorophyll
- diether_lipids
- diss_carb_dioxide
- diss_hydrogen
- diss_inorg_carb
- diss_org_carb
- diss_org_nitro
- diss_oxygen
- glucosidase_act
- magnesium
- mean_frict_vel
- mean_peak_frict_vel
- methane
- misc_param
- n_alkanes
- nitrate
- nitrite
- nitro
- org_carb
- org_matter
- org_nitro
- organism_count
- oxy_stat_samp
- ph
- part_org_carb
- perturbation
- petroleum_hydrocarb
- phaeopigments
- phosphate
- phosplipid_fatt_acid
- potassium
- pressure
- redox_potential
- salinity
- samp_store_dur
- samp_store_loc
- samp_store_temp
- silicate
- sodium
- sulfate
- sulfide
- tot_carb
- tot_nitro_content
- tot_org_carb
- turbidity
- water_content
slot_usage:
  samp_name:
    name: samp_name
    required: true
  project_name:
    name: project_name
    required: true
  depth:
    name: depth
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - built environment
    - air
    - agriculture
    required: false
  elev:
    name: elev
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - built environment
    - air
    - agriculture
    required: false
  alkalinity:
    name: alkalinity
    domain_of:
    - water
    - wastewater_sludge
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    required: false
  alkyl_diethers:
    name: alkyl_diethers
    domain_of:
    - water
    - sediment
    - microbial mat_biofilm
    required: false
  aminopept_act:
    name: aminopept_act
    domain_of:
    - water
    - sediment
    - microbial mat_biofilm
    required: false
  ammonium:
    name: ammonium
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    required: false
  bacteria_carb_prod:
    name: bacteria_carb_prod
    domain_of:
    - water
    - sediment
    - microbial mat_biofilm
    required: false
  biomass:
    name: biomass
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    required: false
  bishomohopanol:
    name: bishomohopanol
    domain_of:
    - water
    - sediment
    - microbial mat_biofilm
    required: false
  bromide:
    name: bromide
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    required: false
  calcium:
    name: calcium
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    required: false
  carb_nitro_ratio:
    name: carb_nitro_ratio
    domain_of:
    - water
    - sediment
    - microbial mat_biofilm
    required: false
  chem_administration:
    name: chem_administration
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-farm environment
    - air
    - agriculture
    required: false
  chloride:
    name: chloride
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    required: false
  chlorophyll:
    name: chlorophyll
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    required: false
  diether_lipids:
    name: diether_lipids
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    required: false
  diss_carb_dioxide:
    name: diss_carb_dioxide
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    required: false
  diss_hydrogen:
    name: diss_hydrogen
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    required: false
  diss_inorg_carb:
    name: diss_inorg_carb
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    required: false
  diss_org_carb:
    name: diss_org_carb
    domain_of:
    - water
    - sediment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    required: false
  diss_org_nitro:
    name: diss_org_nitro
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    required: false
  diss_oxygen:
    name: diss_oxygen
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    required: false
  glucosidase_act:
    name: glucosidase_act
    domain_of:
    - water
    - sediment
    - microbial mat_biofilm
    required: false
  magnesium:
    name: magnesium
    domain_of:
    - water
    - sediment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    required: false
  mean_frict_vel:
    name: mean_frict_vel
    domain_of:
    - water
    - sediment
    - microbial mat_biofilm
    required: false
  mean_peak_frict_vel:
    name: mean_peak_frict_vel
    domain_of:
    - water
    - sediment
    - microbial mat_biofilm
    required: false
  methane:
    name: methane
    domain_of:
    - sediment
    - microbial mat_biofilm
    - air
    required: false
  misc_param:
    name: misc_param
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - air
    - agriculture
    required: false
  n_alkanes:
    name: n_alkanes
    domain_of:
    - water
    - sediment
    - microbial mat_biofilm
    required: false
  nitrate:
    name: nitrate
    domain_of:
    - water
    - wastewater_sludge
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    required: false
  nitrite:
    name: nitrite
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    required: false
  nitro:
    name: nitro
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    required: false
  org_carb:
    name: org_carb
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    required: false
  org_matter:
    name: org_matter
    domain_of:
    - water
    - soil
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    required: false
  org_nitro:
    name: org_nitro
    domain_of:
    - water
    - soil
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    required: false
  organism_count:
    name: organism_count
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - built environment
    - air
    - agriculture
    required: false
  oxy_stat_samp:
    name: oxy_stat_samp
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    - agriculture
    required: false
  ph:
    name: ph
    domain_of:
    - water
    - wastewater_sludge
    - soil
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - food-farm environment
    required: false
  part_org_carb:
    name: part_org_carb
    domain_of:
    - water
    - sediment
    - microbial mat_biofilm
    required: false
  perturbation:
    name: perturbation
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-farm environment
    - food-animal and animal feed
    - air
    - agriculture
    required: false
  petroleum_hydrocarb:
    name: petroleum_hydrocarb
    domain_of:
    - water
    - sediment
    - microbial mat_biofilm
    required: false
  phaeopigments:
    name: phaeopigments
    domain_of:
    - water
    - sediment
    - microbial mat_biofilm
    required: false
  phosphate:
    name: phosphate
    domain_of:
    - water
    - wastewater_sludge
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    required: false
  phosplipid_fatt_acid:
    name: phosplipid_fatt_acid
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    required: false
  potassium:
    name: potassium
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    required: false
  pressure:
    name: pressure
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    required: false
  redox_potential:
    name: redox_potential
    domain_of:
    - water
    - sediment
    - microbial mat_biofilm
    required: false
  salinity:
    name: salinity
    domain_of:
    - water
    - wastewater_sludge
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-farm environment
    - air
    required: false
  samp_store_dur:
    name: samp_store_dur
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    - agriculture
    required: false
  samp_store_loc:
    name: samp_store_loc
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    - agriculture
    required: false
  samp_store_temp:
    name: samp_store_temp
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    required: false
  samp_vol_we_dna_ext:
    name: samp_vol_we_dna_ext
    required: false
  silicate:
    name: silicate
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    required: false
  sodium:
    name: sodium
    domain_of:
    - water
    - wastewater_sludge
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    required: false
  sulfate:
    name: sulfate
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    required: false
  sulfide:
    name: sulfide
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    required: false
  temp:
    name: temp
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - built environment
    - air
    - agriculture
    required: false
  tot_carb:
    name: tot_carb
    domain_of:
    - sediment
    - microbial mat_biofilm
    required: false
  tot_nitro_content:
    name: tot_nitro_content
    domain_of:
    - soil
    - sediment
    - microbial mat_biofilm
    - food-farm environment
    required: false
  tot_org_carb:
    name: tot_org_carb
    domain_of:
    - soil
    - sediment
    - microbial mat_biofilm
    - food-farm environment
    - agriculture
    required: false
  turbidity:
    name: turbidity
    domain_of:
    - water
    - sediment
    - microbial mat_biofilm
    - food-farm environment
    required: false
  water_content:
    name: water_content
    domain_of:
    - soil
    - sediment
    - microbial mat_biofilm
    required: false

Induced

name: microbial mat_biofilm
description: microbial mat/biofilm
from_schema: http://w3id.org/mixs
slot_usage:
  samp_name:
    name: samp_name
    required: true
  project_name:
    name: project_name
    required: true
  depth:
    name: depth
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - built environment
    - air
    - agriculture
    required: false
  elev:
    name: elev
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - built environment
    - air
    - agriculture
    required: false
  alkalinity:
    name: alkalinity
    domain_of:
    - water
    - wastewater_sludge
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    required: false
  alkyl_diethers:
    name: alkyl_diethers
    domain_of:
    - water
    - sediment
    - microbial mat_biofilm
    required: false
  aminopept_act:
    name: aminopept_act
    domain_of:
    - water
    - sediment
    - microbial mat_biofilm
    required: false
  ammonium:
    name: ammonium
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    required: false
  bacteria_carb_prod:
    name: bacteria_carb_prod
    domain_of:
    - water
    - sediment
    - microbial mat_biofilm
    required: false
  biomass:
    name: biomass
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    required: false
  bishomohopanol:
    name: bishomohopanol
    domain_of:
    - water
    - sediment
    - microbial mat_biofilm
    required: false
  bromide:
    name: bromide
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    required: false
  calcium:
    name: calcium
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    required: false
  carb_nitro_ratio:
    name: carb_nitro_ratio
    domain_of:
    - water
    - sediment
    - microbial mat_biofilm
    required: false
  chem_administration:
    name: chem_administration
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-farm environment
    - air
    - agriculture
    required: false
  chloride:
    name: chloride
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    required: false
  chlorophyll:
    name: chlorophyll
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    required: false
  diether_lipids:
    name: diether_lipids
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    required: false
  diss_carb_dioxide:
    name: diss_carb_dioxide
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    required: false
  diss_hydrogen:
    name: diss_hydrogen
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    required: false
  diss_inorg_carb:
    name: diss_inorg_carb
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    required: false
  diss_org_carb:
    name: diss_org_carb
    domain_of:
    - water
    - sediment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    required: false
  diss_org_nitro:
    name: diss_org_nitro
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    required: false
  diss_oxygen:
    name: diss_oxygen
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    required: false
  glucosidase_act:
    name: glucosidase_act
    domain_of:
    - water
    - sediment
    - microbial mat_biofilm
    required: false
  magnesium:
    name: magnesium
    domain_of:
    - water
    - sediment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    required: false
  mean_frict_vel:
    name: mean_frict_vel
    domain_of:
    - water
    - sediment
    - microbial mat_biofilm
    required: false
  mean_peak_frict_vel:
    name: mean_peak_frict_vel
    domain_of:
    - water
    - sediment
    - microbial mat_biofilm
    required: false
  methane:
    name: methane
    domain_of:
    - sediment
    - microbial mat_biofilm
    - air
    required: false
  misc_param:
    name: misc_param
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - air
    - agriculture
    required: false
  n_alkanes:
    name: n_alkanes
    domain_of:
    - water
    - sediment
    - microbial mat_biofilm
    required: false
  nitrate:
    name: nitrate
    domain_of:
    - water
    - wastewater_sludge
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    required: false
  nitrite:
    name: nitrite
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    required: false
  nitro:
    name: nitro
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    required: false
  org_carb:
    name: org_carb
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    required: false
  org_matter:
    name: org_matter
    domain_of:
    - water
    - soil
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    required: false
  org_nitro:
    name: org_nitro
    domain_of:
    - water
    - soil
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    required: false
  organism_count:
    name: organism_count
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - built environment
    - air
    - agriculture
    required: false
  oxy_stat_samp:
    name: oxy_stat_samp
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    - agriculture
    required: false
  ph:
    name: ph
    domain_of:
    - water
    - wastewater_sludge
    - soil
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - food-farm environment
    required: false
  part_org_carb:
    name: part_org_carb
    domain_of:
    - water
    - sediment
    - microbial mat_biofilm
    required: false
  perturbation:
    name: perturbation
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-farm environment
    - food-animal and animal feed
    - air
    - agriculture
    required: false
  petroleum_hydrocarb:
    name: petroleum_hydrocarb
    domain_of:
    - water
    - sediment
    - microbial mat_biofilm
    required: false
  phaeopigments:
    name: phaeopigments
    domain_of:
    - water
    - sediment
    - microbial mat_biofilm
    required: false
  phosphate:
    name: phosphate
    domain_of:
    - water
    - wastewater_sludge
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    required: false
  phosplipid_fatt_acid:
    name: phosplipid_fatt_acid
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    required: false
  potassium:
    name: potassium
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    required: false
  pressure:
    name: pressure
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    required: false
  redox_potential:
    name: redox_potential
    domain_of:
    - water
    - sediment
    - microbial mat_biofilm
    required: false
  salinity:
    name: salinity
    domain_of:
    - water
    - wastewater_sludge
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-farm environment
    - air
    required: false
  samp_store_dur:
    name: samp_store_dur
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    - agriculture
    required: false
  samp_store_loc:
    name: samp_store_loc
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    - agriculture
    required: false
  samp_store_temp:
    name: samp_store_temp
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    required: false
  samp_vol_we_dna_ext:
    name: samp_vol_we_dna_ext
    required: false
  silicate:
    name: silicate
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    required: false
  sodium:
    name: sodium
    domain_of:
    - water
    - wastewater_sludge
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    required: false
  sulfate:
    name: sulfate
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    required: false
  sulfide:
    name: sulfide
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    required: false
  temp:
    name: temp
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - built environment
    - air
    - agriculture
    required: false
  tot_carb:
    name: tot_carb
    domain_of:
    - sediment
    - microbial mat_biofilm
    required: false
  tot_nitro_content:
    name: tot_nitro_content
    domain_of:
    - soil
    - sediment
    - microbial mat_biofilm
    - food-farm environment
    required: false
  tot_org_carb:
    name: tot_org_carb
    domain_of:
    - soil
    - sediment
    - microbial mat_biofilm
    - food-farm environment
    - agriculture
    required: false
  turbidity:
    name: turbidity
    domain_of:
    - water
    - sediment
    - microbial mat_biofilm
    - food-farm environment
    required: false
  water_content:
    name: water_content
    domain_of:
    - soil
    - sediment
    - microbial mat_biofilm
    required: false
attributes:
  lat_lon:
    name: lat_lon
    annotations:
      expected_value:
        tag: expected_value
        value: decimal degrees,  limit to 8 decimal points
    description: The geographical origin of the sample as defined by latitude and
      longitude. The values should be reported in decimal degrees and in WGS84 system
    title: geographic location (latitude and longitude)
    examples:
    - value: 50.586825 6.408977
    from_schema: http://w3id.org/mixs
    aliases:
    - geographic location (latitude and longitude)
    is_a: environment field
    string_serialization: '{float} {float}'
    slot_uri: MIXS:0000009
    multivalued: false
    alias: lat_lon
    owner: microbial mat_biofilm
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    - built environment
    - air
    - agriculture
    range: string
  depth:
    name: depth
    description: The vertical distance below local surface, e.g. for sediment or soil
      samples depth is measured from sediment or soil surface, respectively. Depth
      can be reported as an interval for subsurface samples.
    title: depth
    from_schema: http://w3id.org/mixs
    is_a: environment field
    slot_uri: MIXS:0000018
    multivalued: false
    alias: depth
    owner: microbial mat_biofilm
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - built environment
    - air
    - agriculture
    range: quantity value
    required: false
  alt:
    name: alt
    annotations:
      expected_value:
        tag: expected_value
        value: measurement value
    description: Altitude is a term used to identify heights of objects such as airplanes,
      space shuttles, rockets, atmospheric balloons and heights of places such as
      atmospheric layers and clouds. It is used to measure the height of an object
      which is above the earth's surface. In this context, the altitude measurement
      is the vertical distance between the earth's surface above sea level and the
      sampled position in the air
    title: altitude
    examples:
    - value: 100 meter
    from_schema: http://w3id.org/mixs
    aliases:
    - altitude
    is_a: environment field
    slot_uri: MIXS:0000094
    multivalued: false
    alias: alt
    owner: microbial mat_biofilm
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - built environment
    - air
    - agriculture
    range: quantity value
  elev:
    name: elev
    description: Elevation of the sampling site is its height above a fixed reference
      point, most commonly the mean sea level. Elevation is mainly used when referring
      to points on the earth's surface, while altitude is used for points above the
      surface, such as an aircraft in flight or a spacecraft in orbit.
    title: elevation
    from_schema: http://w3id.org/mixs
    is_a: environment field
    slot_uri: MIXS:0000093
    multivalued: false
    alias: elev
    owner: microbial mat_biofilm
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - built environment
    - air
    - agriculture
    range: quantity value
    required: false
  temp:
    name: temp
    description: Temperature of the sample at the time of sampling.
    title: temperature
    from_schema: http://w3id.org/mixs
    is_a: environment field
    slot_uri: MIXS:0000113
    multivalued: false
    alias: temp
    owner: microbial mat_biofilm
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - built environment
    - air
    - agriculture
    range: quantity value
    required: false
  geo_loc_name:
    name: geo_loc_name
    annotations:
      expected_value:
        tag: expected_value
        value: 'country or sea name (INSDC or GAZ): region(GAZ), specific location
          name'
    description: The geographical origin of the sample as defined by the country or
      sea name followed by specific region name. Country or sea names should be chosen
      from the INSDC country list (http://insdc.org/country.html), or the GAZ ontology
      (http://purl.bioontology.org/ontology/GAZ)
    title: geographic location (country and/or sea,region)
    examples:
    - value: 'USA: Maryland, Bethesda'
    from_schema: http://w3id.org/mixs
    aliases:
    - geographic location (country and/or sea,region)
    is_a: environment field
    string_serialization: '{term}: {term}, {text}'
    slot_uri: MIXS:0000010
    multivalued: false
    alias: geo_loc_name
    owner: microbial mat_biofilm
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    - built environment
    - air
    - agriculture
    range: string
  collection_date:
    name: collection_date
    annotations:
      expected_value:
        tag: expected_value
        value: date and time
    description: 'The time of sampling, either as an instance (single point in time)
      or interval. In case no exact time is available, the date/time can be right
      truncated i.e. all of these are valid times: 2008-01-23T19:23:10+00:00; 2008-01-23T19:23:10;
      2008-01-23; 2008-01; 2008; Except: 2008-01; 2008 all are ISO8601 compliant'
    title: collection date
    examples:
    - value: 2018-05-11T10:00:00+01:00; 2018-05-11
    from_schema: http://w3id.org/mixs
    aliases:
    - collection date
    is_a: environment field
    slot_uri: MIXS:0000011
    multivalued: false
    alias: collection_date
    owner: microbial mat_biofilm
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    - built environment
    - air
    - agriculture
    range: date
  env_broad_scale:
    name: env_broad_scale
    annotations:
      expected_value:
        tag: expected_value
        value: The major environment type(s) where the sample was collected. Recommend
          subclasses of biome [ENVO:00000428]. Multiple terms can be separated by
          one or more pipes.
    description: 'Report the major environmental system the sample or specimen came
      from. The system(s) identified should have a coarse spatial grain, to provide
      the general environmental context of where the sampling was done (e.g. in the
      desert or a rainforest). We recommend using subclasses of EnvO’s biome class:  http://purl.obolibrary.org/obo/ENVO_00000428.
      EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS'
    title: broad-scale environmental context
    examples:
    - value: oceanic epipelagic zone biome [ENVO:01000033] for annotating a water
        sample from the photic zone in middle of the Atlantic Ocean
    from_schema: http://w3id.org/mixs
    aliases:
    - broad-scale environmental context
    is_a: environment field
    string_serialization: '{termLabel} {[termID]}'
    slot_uri: MIXS:0000012
    multivalued: false
    alias: env_broad_scale
    owner: microbial mat_biofilm
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    - built environment
    - air
    - agriculture
    range: string
  env_local_scale:
    name: env_local_scale
    annotations:
      expected_value:
        tag: expected_value
        value: Environmental entities having causal influences upon the entity at
          time of sampling.
    description: 'Report the entity or entities which are in the sample or specimen’s
      local vicinity and which you believe have significant causal influences on your
      sample or specimen. We recommend using EnvO terms which are of smaller spatial
      grain than your entry for env_broad_scale. Terms, such as anatomical sites,
      from other OBO Library ontologies which interoperate with EnvO (e.g. UBERON)
      are accepted in this field. EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS.'
    title: local environmental context
    examples:
    - value: 'litter layer [ENVO:01000338]; Annotating a pooled sample taken from
        various vegetation layers in a forest consider: canopy [ENVO:00000047]|herb
        and fern layer [ENVO:01000337]|litter layer [ENVO:01000338]|understory [01000335]|shrub
        layer [ENVO:01000336].'
    from_schema: http://w3id.org/mixs
    aliases:
    - local environmental context
    is_a: environment field
    string_serialization: '{termLabel} {[termID]}'
    slot_uri: MIXS:0000013
    multivalued: false
    alias: env_local_scale
    owner: microbial mat_biofilm
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    - built environment
    - air
    - agriculture
    range: string
  env_medium:
    name: env_medium
    annotations:
      expected_value:
        tag: expected_value
        value: The material displaced by the entity at time of sampling. Recommend
          subclasses of environmental material [ENVO:00010483].
    description: 'Report the environmental material(s) immediately surrounding the
      sample or specimen at the time of sampling. We recommend using subclasses of
      ''environmental material'' (http://purl.obolibrary.org/obo/ENVO_00010483). EnvO
      documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS
      . Terms from other OBO ontologies are permissible as long as they reference
      mass/volume nouns (e.g. air, water, blood) and not discrete, countable entities
      (e.g. a tree, a leaf, a table top).'
    title: environmental medium
    examples:
    - value: 'soil [ENVO:00001998]; Annotating a fish swimming in the upper 100 m
        of the Atlantic Ocean, consider: ocean water [ENVO:00002151]. Example: Annotating
        a duck on a pond consider: pond water [ENVO:00002228]|air [ENVO_00002005]'
    from_schema: http://w3id.org/mixs
    aliases:
    - environmental medium
    is_a: environment field
    string_serialization: '{termLabel} {[termID]}'
    slot_uri: MIXS:0000014
    multivalued: false
    alias: env_medium
    owner: microbial mat_biofilm
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    - built environment
    - air
    - agriculture
    range: string
  alkalinity:
    name: alkalinity
    description: Alkalinity, the ability of a solution to neutralize acids to the
      equivalence point of carbonate or bicarbonate
    title: alkalinity
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000421
    multivalued: false
    alias: alkalinity
    owner: microbial mat_biofilm
    domain_of:
    - water
    - wastewater_sludge
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: quantity value
    required: false
  alkyl_diethers:
    name: alkyl_diethers
    description: Concentration of alkyl diethers
    title: alkyl diethers
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000490
    multivalued: false
    alias: alkyl_diethers
    owner: microbial mat_biofilm
    domain_of:
    - water
    - sediment
    - microbial mat_biofilm
    range: quantity value
    required: false
  aminopept_act:
    name: aminopept_act
    description: Measurement of aminopeptidase activity
    title: aminopeptidase activity
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000172
    multivalued: false
    alias: aminopept_act
    owner: microbial mat_biofilm
    domain_of:
    - water
    - sediment
    - microbial mat_biofilm
    range: quantity value
    required: false
  ammonium:
    name: ammonium
    description: Concentration of ammonium in the sample
    title: ammonium
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000427
    multivalued: false
    alias: ammonium
    owner: microbial mat_biofilm
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: quantity value
    required: false
  bacteria_carb_prod:
    name: bacteria_carb_prod
    description: Measurement of bacterial carbon production
    title: bacterial carbon production
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000173
    multivalued: false
    alias: bacteria_carb_prod
    owner: microbial mat_biofilm
    domain_of:
    - water
    - sediment
    - microbial mat_biofilm
    range: quantity value
    required: false
  biomass:
    name: biomass
    description: Amount of biomass; should include the name for the part of biomass
      measured, e.g. Microbial, total. Can include multiple measurements
    title: biomass
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{float} {unit}'
    slot_uri: MIXS:0000174
    multivalued: true
    alias: biomass
    owner: microbial mat_biofilm
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    range: string
    required: false
  bishomohopanol:
    name: bishomohopanol
    description: Concentration of bishomohopanol
    title: bishomohopanol
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000175
    multivalued: false
    alias: bishomohopanol
    owner: microbial mat_biofilm
    domain_of:
    - water
    - sediment
    - microbial mat_biofilm
    range: quantity value
    required: false
  bromide:
    name: bromide
    description: Concentration of bromide
    title: bromide
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000176
    multivalued: false
    alias: bromide
    owner: microbial mat_biofilm
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    range: quantity value
    required: false
  calcium:
    name: calcium
    description: Concentration of calcium in the sample
    title: calcium
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000432
    multivalued: false
    alias: calcium
    owner: microbial mat_biofilm
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: quantity value
    required: false
  carb_nitro_ratio:
    name: carb_nitro_ratio
    description: Ratio of amount or concentrations of carbon to nitrogen
    title: carbon/nitrogen ratio
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000310
    multivalued: false
    alias: carb_nitro_ratio
    owner: microbial mat_biofilm
    domain_of:
    - water
    - sediment
    - microbial mat_biofilm
    range: quantity value
    required: false
  chem_administration:
    name: chem_administration
    description: List of chemical compounds administered to the host or site where
      sampling occurred, and when (e.g. Antibiotics, n fertilizer, air filter); can
      include multiple compounds. For chemical entities of biological interest ontology
      (chebi) (v 163), http://purl.bioontology.org/ontology/chebi
    title: chemical administration
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{termLabel} {[termID]};{timestamp}'
    slot_uri: MIXS:0000751
    multivalued: true
    alias: chem_administration
    owner: microbial mat_biofilm
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-farm environment
    - air
    - agriculture
    range: string
    required: false
  chloride:
    name: chloride
    description: Concentration of chloride in the sample
    title: chloride
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000429
    multivalued: false
    alias: chloride
    owner: microbial mat_biofilm
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: quantity value
    required: false
  chlorophyll:
    name: chlorophyll
    description: Concentration of chlorophyll
    title: chlorophyll
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000177
    multivalued: false
    alias: chlorophyll
    owner: microbial mat_biofilm
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    range: quantity value
    required: false
  diether_lipids:
    name: diether_lipids
    description: Concentration of diether lipids; can include multiple types of diether
      lipids
    title: diether lipids
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{float} {unit}'
    slot_uri: MIXS:0000178
    multivalued: true
    alias: diether_lipids
    owner: microbial mat_biofilm
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    range: string
    required: false
  diss_carb_dioxide:
    name: diss_carb_dioxide
    description: Concentration of dissolved carbon dioxide in the sample or liquid
      portion of the sample
    title: dissolved carbon dioxide
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000436
    multivalued: false
    alias: diss_carb_dioxide
    owner: microbial mat_biofilm
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: quantity value
    required: false
  diss_hydrogen:
    name: diss_hydrogen
    description: Concentration of dissolved hydrogen
    title: dissolved hydrogen
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000179
    multivalued: false
    alias: diss_hydrogen
    owner: microbial mat_biofilm
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    range: quantity value
    required: false
  diss_inorg_carb:
    name: diss_inorg_carb
    description: Dissolved inorganic carbon concentration in the sample, typically
      measured after filtering the sample using a 0.45 micrometer filter
    title: dissolved inorganic carbon
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000434
    multivalued: false
    alias: diss_inorg_carb
    owner: microbial mat_biofilm
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: quantity value
    required: false
  diss_org_carb:
    name: diss_org_carb
    description: Concentration of dissolved organic carbon in the sample, liquid portion
      of the sample, or aqueous phase of the fluid
    title: dissolved organic carbon
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000433
    multivalued: false
    alias: diss_org_carb
    owner: microbial mat_biofilm
    domain_of:
    - water
    - sediment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: quantity value
    required: false
  diss_org_nitro:
    name: diss_org_nitro
    description: Dissolved organic nitrogen concentration measured as; total dissolved
      nitrogen - NH4 - NO3 - NO2
    title: dissolved organic nitrogen
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000162
    multivalued: false
    alias: diss_org_nitro
    owner: microbial mat_biofilm
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    range: quantity value
    required: false
  diss_oxygen:
    name: diss_oxygen
    description: Concentration of dissolved oxygen
    title: dissolved oxygen
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000119
    multivalued: false
    alias: diss_oxygen
    owner: microbial mat_biofilm
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    range: quantity value
    required: false
  glucosidase_act:
    name: glucosidase_act
    description: Measurement of glucosidase activity
    title: glucosidase activity
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000137
    multivalued: false
    alias: glucosidase_act
    owner: microbial mat_biofilm
    domain_of:
    - water
    - sediment
    - microbial mat_biofilm
    range: quantity value
    required: false
  magnesium:
    name: magnesium
    description: Concentration of magnesium in the sample
    title: magnesium
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000431
    multivalued: false
    alias: magnesium
    owner: microbial mat_biofilm
    domain_of:
    - water
    - sediment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: quantity value
    required: false
  mean_frict_vel:
    name: mean_frict_vel
    description: Measurement of mean friction velocity
    title: mean friction velocity
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000498
    multivalued: false
    alias: mean_frict_vel
    owner: microbial mat_biofilm
    domain_of:
    - water
    - sediment
    - microbial mat_biofilm
    range: quantity value
    required: false
  mean_peak_frict_vel:
    name: mean_peak_frict_vel
    description: Measurement of mean peak friction velocity
    title: mean peak friction velocity
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000502
    multivalued: false
    alias: mean_peak_frict_vel
    owner: microbial mat_biofilm
    domain_of:
    - water
    - sediment
    - microbial mat_biofilm
    range: quantity value
    required: false
  methane:
    name: methane
    description: Methane (gas) amount or concentration at the time of sampling
    title: methane
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000101
    multivalued: false
    alias: methane
    owner: microbial mat_biofilm
    domain_of:
    - sediment
    - microbial mat_biofilm
    - air
    range: quantity value
    required: false
  misc_param:
    name: misc_param
    description: Any other measurement performed or parameter collected, that is not
      listed here
    title: miscellaneous parameter
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{float} {unit}'
    slot_uri: MIXS:0000752
    multivalued: true
    alias: misc_param
    owner: microbial mat_biofilm
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - air
    - agriculture
    range: string
    required: false
  n_alkanes:
    name: n_alkanes
    description: Concentration of n-alkanes; can include multiple n-alkanes
    title: n-alkanes
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{float} {unit}'
    slot_uri: MIXS:0000503
    multivalued: true
    alias: n_alkanes
    owner: microbial mat_biofilm
    domain_of:
    - water
    - sediment
    - microbial mat_biofilm
    range: string
    required: false
  nitrate:
    name: nitrate
    description: Concentration of nitrate in the sample
    title: nitrate
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000425
    multivalued: false
    alias: nitrate
    owner: microbial mat_biofilm
    domain_of:
    - water
    - wastewater_sludge
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: quantity value
    required: false
  nitrite:
    name: nitrite
    description: Concentration of nitrite in the sample
    title: nitrite
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000426
    multivalued: false
    alias: nitrite
    owner: microbial mat_biofilm
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: quantity value
    required: false
  nitro:
    name: nitro
    description: Concentration of nitrogen (total)
    title: nitrogen
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000504
    multivalued: false
    alias: nitro
    owner: microbial mat_biofilm
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    range: quantity value
    required: false
  org_carb:
    name: org_carb
    description: Concentration of organic carbon
    title: organic carbon
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000508
    multivalued: false
    alias: org_carb
    owner: microbial mat_biofilm
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    range: quantity value
    required: false
  org_matter:
    name: org_matter
    description: Concentration of organic matter
    title: organic matter
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000204
    multivalued: false
    alias: org_matter
    owner: microbial mat_biofilm
    domain_of:
    - water
    - soil
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    range: quantity value
    required: false
  org_nitro:
    name: org_nitro
    description: Concentration of organic nitrogen
    title: organic nitrogen
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000205
    multivalued: false
    alias: org_nitro
    owner: microbial mat_biofilm
    domain_of:
    - water
    - soil
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    range: quantity value
    required: false
  organism_count:
    name: organism_count
    description: 'Total cell count of any organism (or group of organisms) per gram,
      volume or area of sample, should include name of organism followed by count.
      The method that was used for the enumeration (e.g. qPCR, atp, mpn, etc.) Should
      also be provided. (example: total prokaryotes; 3.5e7 cells per ml; qpcr)'
    title: organism count
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000103
    multivalued: true
    alias: organism_count
    owner: microbial mat_biofilm
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - built environment
    - air
    - agriculture
    range: organism_count_enum
    required: false
  oxy_stat_samp:
    name: oxy_stat_samp
    description: Oxygenation status of sample
    title: oxygenation status of sample
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000753
    multivalued: false
    alias: oxy_stat_samp
    owner: microbial mat_biofilm
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    - agriculture
    range: oxy_stat_samp_enum
    required: false
  ph:
    name: ph
    description: Ph measurement of the sample, or liquid portion of sample, or aqueous
      phase of the fluid
    title: pH
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0001001
    multivalued: false
    alias: ph
    owner: microbial mat_biofilm
    domain_of:
    - water
    - wastewater_sludge
    - soil
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - food-farm environment
    range: double
    required: false
  part_org_carb:
    name: part_org_carb
    description: Concentration of particulate organic carbon
    title: particulate organic carbon
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000515
    multivalued: false
    alias: part_org_carb
    owner: microbial mat_biofilm
    domain_of:
    - water
    - sediment
    - microbial mat_biofilm
    range: quantity value
    required: false
  perturbation:
    name: perturbation
    description: Type of perturbation, e.g. chemical administration, physical disturbance,
      etc., coupled with perturbation regimen including how many times the perturbation
      was repeated, how long each perturbation lasted, and the start and end time
      of the entire perturbation period; can include multiple perturbation types
    title: perturbation
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{Rn/start_time/end_time/duration}'
    slot_uri: MIXS:0000754
    multivalued: true
    alias: perturbation
    owner: microbial mat_biofilm
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-farm environment
    - food-animal and animal feed
    - air
    - agriculture
    range: string
    required: false
  petroleum_hydrocarb:
    name: petroleum_hydrocarb
    description: Concentration of petroleum hydrocarbon
    title: petroleum hydrocarbon
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000516
    multivalued: false
    alias: petroleum_hydrocarb
    owner: microbial mat_biofilm
    domain_of:
    - water
    - sediment
    - microbial mat_biofilm
    range: quantity value
    required: false
  phaeopigments:
    name: phaeopigments
    description: Concentration of phaeopigments; can include multiple phaeopigments
    title: phaeopigments
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{float} {unit}'
    slot_uri: MIXS:0000180
    multivalued: true
    alias: phaeopigments
    owner: microbial mat_biofilm
    domain_of:
    - water
    - sediment
    - microbial mat_biofilm
    range: string
    required: false
  phosphate:
    name: phosphate
    description: Concentration of phosphate
    title: phosphate
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000505
    multivalued: false
    alias: phosphate
    owner: microbial mat_biofilm
    domain_of:
    - water
    - wastewater_sludge
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    range: quantity value
    required: false
  phosplipid_fatt_acid:
    name: phosplipid_fatt_acid
    description: Concentration of phospholipid fatty acids; can include multiple values
    title: phospholipid fatty acid
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{float} {unit}'
    slot_uri: MIXS:0000181
    multivalued: true
    alias: phosplipid_fatt_acid
    owner: microbial mat_biofilm
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    range: string
    required: false
  potassium:
    name: potassium
    description: Concentration of potassium in the sample
    title: potassium
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000430
    multivalued: false
    alias: potassium
    owner: microbial mat_biofilm
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: quantity value
    required: false
  pressure:
    name: pressure
    description: Pressure to which the sample is subject to, in atmospheres
    title: pressure
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000412
    multivalued: false
    alias: pressure
    owner: microbial mat_biofilm
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: quantity value
    required: false
  redox_potential:
    name: redox_potential
    description: Redox potential, measured relative to a hydrogen cell, indicating
      oxidation or reduction potential
    title: redox potential
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000182
    multivalued: false
    alias: redox_potential
    owner: microbial mat_biofilm
    domain_of:
    - water
    - sediment
    - microbial mat_biofilm
    range: quantity value
    required: false
  salinity:
    name: salinity
    description: The total concentration of all dissolved salts in a liquid or solid
      sample. While salinity can be measured by a complete chemical analysis, this
      method is difficult and time consuming. More often, it is instead derived from
      the conductivity measurement. This is known as practical salinity. These derivations
      compare the specific conductance of the sample to a salinity standard such as
      seawater.
    title: salinity
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000183
    multivalued: false
    alias: salinity
    owner: microbial mat_biofilm
    domain_of:
    - water
    - wastewater_sludge
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-farm environment
    - air
    range: quantity value
    required: false
  samp_store_dur:
    name: samp_store_dur
    description: Duration for which the sample was stored
    title: sample storage duration
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{duration}'
    slot_uri: MIXS:0000116
    multivalued: false
    alias: samp_store_dur
    owner: microbial mat_biofilm
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    - agriculture
    range: string
    required: false
  samp_store_loc:
    name: samp_store_loc
    description: Location at which sample was stored, usually name of a specific freezer/room
    title: sample storage location
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0000755
    multivalued: false
    alias: samp_store_loc
    owner: microbial mat_biofilm
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    - agriculture
    range: string
    required: false
  samp_store_temp:
    name: samp_store_temp
    description: Temperature at which sample was stored, e.g. -80 degree Celsius
    title: sample storage temperature
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000110
    multivalued: false
    alias: samp_store_temp
    owner: microbial mat_biofilm
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    range: quantity value
    required: false
  silicate:
    name: silicate
    description: Concentration of silicate
    title: silicate
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000184
    multivalued: false
    alias: silicate
    owner: microbial mat_biofilm
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    range: quantity value
    required: false
  sodium:
    name: sodium
    description: Sodium concentration in the sample
    title: sodium
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000428
    multivalued: false
    alias: sodium
    owner: microbial mat_biofilm
    domain_of:
    - water
    - wastewater_sludge
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: quantity value
    required: false
  sulfate:
    name: sulfate
    description: Concentration of sulfate in the sample
    title: sulfate
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000423
    multivalued: false
    alias: sulfate
    owner: microbial mat_biofilm
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: quantity value
    required: false
  sulfide:
    name: sulfide
    description: Concentration of sulfide in the sample
    title: sulfide
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000424
    multivalued: false
    alias: sulfide
    owner: microbial mat_biofilm
    domain_of:
    - water
    - sediment
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    range: quantity value
    required: false
  tot_carb:
    name: tot_carb
    description: Total carbon content
    title: total carbon
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000525
    multivalued: false
    alias: tot_carb
    owner: microbial mat_biofilm
    domain_of:
    - sediment
    - microbial mat_biofilm
    range: quantity value
    required: false
  tot_nitro_content:
    name: tot_nitro_content
    description: Total nitrogen content of the sample
    title: total nitrogen content
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000530
    multivalued: false
    alias: tot_nitro_content
    owner: microbial mat_biofilm
    domain_of:
    - soil
    - sediment
    - microbial mat_biofilm
    - food-farm environment
    range: quantity value
    required: false
  tot_org_carb:
    name: tot_org_carb
    description: 'Definition for soil: total organic carbon content of the soil, definition
      otherwise: total organic carbon content'
    title: total organic carbon
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000533
    multivalued: false
    alias: tot_org_carb
    owner: microbial mat_biofilm
    domain_of:
    - soil
    - sediment
    - microbial mat_biofilm
    - food-farm environment
    - agriculture
    range: quantity value
    required: false
  turbidity:
    name: turbidity
    description: Measure of the amount of cloudiness or haziness in water caused by
      individual particles
    title: turbidity
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000191
    multivalued: false
    alias: turbidity
    owner: microbial mat_biofilm
    domain_of:
    - water
    - sediment
    - microbial mat_biofilm
    - food-farm environment
    range: quantity value
    required: false
  water_content:
    name: water_content
    description: Water content measurement
    title: water content
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000185
    multivalued: false
    alias: water_content
    owner: microbial mat_biofilm
    domain_of:
    - soil
    - sediment
    - microbial mat_biofilm
    range: quantity value
    required: false