Class: Plant-associated

plant-associated

Inheritance

Plant-associated

Slots

Name	Cardinality and Range	Description	Inheritance
lat_lon	0..1 String	The geographical origin of the sample as defined by latitude and longitude	direct
depth	0..1 QuantityValue	The vertical distance below local surface, e	direct
alt	0..1 QuantityValue	Altitude is a term used to identify heights of objects such as airplanes, spa...	direct
elev	0..1 QuantityValue	Elevation of the sampling site is its height above a fixed reference point, m...	direct
temp	0..1 QuantityValue	Temperature of the sample at the time of sampling	direct
geo_loc_name	0..1 String	The geographical origin of the sample as defined by the country or sea name f...	direct
collection_date	0..1 Date	The time of sampling, either as an instance (single point in time) or interva...	direct
env_broad_scale	0..1 String	Report the major environmental system the sample or specimen came from	direct
env_local_scale	0..1 String	Report the entity or entities which are in the sample or specimen’s local vic...	direct
env_medium	0..1 String	Report the environmental material(s) immediately surrounding the sample or sp...	direct
air_temp_regm	0..* String	Information about treatment involving an exposure to varying temperatures; sh...	direct
ances_data	0..1 String	Information about either pedigree or other ancestral information description ...	direct
antibiotic_regm	0..* String	Information about treatment involving antibiotic administration; should inclu...	direct
biol_stat	0..1 BiolStatEnum	The level of genome modification	direct
biotic_regm	0..1 String	Information about treatment(s) involving use of biotic factors, such as bacte...	direct
chem_administration	0..* String	List of chemical compounds administered to the host or site where sampling oc...	direct
chem_mutagen	0..* String	Treatment involving use of mutagens; should include the name of mutagen, amou...	direct
climate_environment	0..* String	Treatment involving an exposure to a particular climate; treatment regimen in...	direct
cult_root_med	0..1 String	Name or reference for the hydroponic or in vitro culture rooting medium; can ...	direct
fertilizer_regm	0..* String	Information about treatment involving the use of fertilizers; should include ...	direct
fungicide_regm	0..* String	Information about treatment involving use of fungicides; should include the n...	direct
gaseous_environment	0..* String	Use of conditions with differing gaseous environments; should include the nam...	direct
genetic_mod	0..1 String	Genetic modifications of the genome of an organism, which may occur naturally...	direct
gravity	0..* String	Information about treatment involving use of gravity factor to study various ...	direct
growth_facil	0..1 String	Type of facility where the sampled plant was grown; controlled vocabulary: gr...	direct
growth_habit	0..1 GrowthHabitEnum	Characteristic shape, appearance or growth form of a plant species	direct
growth_hormone_regm	0..* String	Information about treatment involving use of growth hormones; should include ...	direct
herbicide_regm	0..* String	Information about treatment involving use of herbicides; information about tr...	direct
host_age	0..1 QuantityValue	Age of host at the time of sampling; relevant scale depends on species and st...	direct
host_common_name	0..1 String	Common name of the host	direct
host_dry_mass	0..1 QuantityValue	Measurement of dry mass	direct
host_genotype	0..1 String	Observed genotype	direct
host_height	0..1 QuantityValue	The height of subject	direct
host_subspecf_genlin	0..* String	Information about the genetic distinctness of the host organism below the sub...	direct
host_length	0..1 QuantityValue	The length of subject	direct
host_life_stage	0..1 String	Description of life stage of host	direct
host_phenotype	0..1 String	Phenotype of human or other host	direct
host_taxid	0..1 String	NCBI taxon id of the host, e	direct
host_tot_mass	0..1 QuantityValue	Total mass of the host at collection, the unit depends on host	direct
host_wet_mass	0..1 QuantityValue	Measurement of wet mass	direct
humidity_regm	0..* String	Information about treatment involving an exposure to varying degree of humidi...	direct
light_regm	0..1 String	Information about treatment(s) involving exposure to light, including both li...	direct
mechanical_damage	0..* String	Information about any mechanical damage exerted on the plant; can include mul...	direct
mineral_nutr_regm	0..* String	Information about treatment involving the use of mineral supplements; should ...	direct
misc_param	0..* String	Any other measurement performed or parameter collected, that is not listed he...	direct
non_min_nutr_regm	0..* String	Information about treatment involving the exposure of plant to non-mineral nu...	direct
organism_count	0..* OrganismCountEnum	Total cell count of any organism (or group of organisms) per gram, volume or ...	direct
oxy_stat_samp	0..1 OxyStatSampEnum	Oxygenation status of sample	direct
ph_regm	0..* String	Information about treatment involving exposure of plants to varying levels of...	direct
perturbation	0..* String	Type of perturbation, e	direct
pesticide_regm	0..* String	Information about treatment involving use of insecticides; should include the...	direct
plant_growth_med	0..1 PlantGrowthMedEnum	Specification of the media for growing the plants or tissue cultured samples,...	direct
plant_product	0..1 String	Substance produced by the plant, where the sample was obtained from	direct
plant_sex	0..1 PlantSexEnum	Sex of the reproductive parts on the whole plant, e	direct
plant_struc	0..1 String	Name of plant structure the sample was obtained from; for Plant Ontology (PO)...	direct
radiation_regm	0..* String	Information about treatment involving exposure of plant or a plant part to a ...	direct
rainfall_regm	0..* String	Information about treatment involving an exposure to a given amount of rainfa...	direct
root_cond	0..1 String	Relevant rooting conditions such as field plot size, sowing density, containe...	direct
root_med_carbon	0..1 String	Source of organic carbon in the culture rooting medium; e	direct
root_med_macronutr	0..1 String	Measurement of the culture rooting medium macronutrients (N,P, K, Ca, Mg, S);...	direct
root_med_micronutr	0..1 String	Measurement of the culture rooting medium micronutrients (Fe, Mn, Zn, B, Cu, ...	direct
root_med_suppl	0..1 String	Organic supplements of the culture rooting medium, such as vitamins, amino ac...	direct
root_med_ph	0..1 Double	pH measurement of the culture rooting medium; e	direct
root_med_regl	0..1 String	Growth regulators in the culture rooting medium such as cytokinins, auxins, g...	direct
root_med_solid	0..1 String	Specification of the solidifying agent in the culture rooting medium; e	direct
salt_regm	0..* String	Information about treatment involving use of salts as supplement to liquid an...	direct
samp_capt_status	0..1 SampCaptStatusEnum	Reason for the sample	direct
samp_dis_stage	0..1 SampDisStageEnum	Stage of the disease at the time of sample collection, e	direct
salinity	0..1 QuantityValue	The total concentration of all dissolved salts in a liquid or solid sample	direct
samp_store_dur	0..1 String	Duration for which the sample was stored	direct
samp_store_loc	0..1 String	Location at which sample was stored, usually name of a specific freezer/room	direct
samp_store_temp	0..1 QuantityValue	Temperature at which sample was stored, e	direct
season_environment	0..* String	Treatment involving an exposure to a particular season (e	direct
standing_water_regm	0..* String	Treatment involving an exposure to standing water during a plant's life span,...	direct
tiss_cult_growth_med	0..1 String	Description of plant tissue culture growth media used	direct
water_temp_regm	0..* String	Information about treatment involving an exposure to water with varying degre...	direct
watering_regm	0..* String	Information about treatment involving an exposure to watering frequencies, tr...	direct
host_symbiont	0..* String	The taxonomic name of the organism(s) found living in mutualistic, commensali...	direct
misc_param	0..* String	Any other measurement performed or parameter collected, that is not listed he...	direct

Identifier and Mapping Information

Schema Source

from schema: http://w3id.org/mixs

Mappings

Mapping Type	Mapped Value
self	MIXS:Plant-associated
native	MIXS:Plant-associated

LinkML Source

Direct

name: plant-associated
description: plant-associated
from_schema: http://w3id.org/mixs
slots:
- lat_lon
- depth
- alt
- elev
- temp
- geo_loc_name
- collection_date
- env_broad_scale
- env_local_scale
- env_medium
- air_temp_regm
- ances_data
- antibiotic_regm
- biol_stat
- biotic_regm
- chem_administration
- chem_mutagen
- climate_environment
- cult_root_med
- fertilizer_regm
- fungicide_regm
- gaseous_environment
- genetic_mod
- gravity
- growth_facil
- growth_habit
- growth_hormone_regm
- herbicide_regm
- host_age
- host_common_name
- host_dry_mass
- host_genotype
- host_height
- host_subspecf_genlin
- host_length
- host_life_stage
- host_phenotype
- host_taxid
- host_tot_mass
- host_wet_mass
- humidity_regm
- light_regm
- mechanical_damage
- mineral_nutr_regm
- misc_param
- non_min_nutr_regm
- organism_count
- oxy_stat_samp
- ph_regm
- perturbation
- pesticide_regm
- plant_growth_med
- plant_product
- plant_sex
- plant_struc
- radiation_regm
- rainfall_regm
- root_cond
- root_med_carbon
- root_med_macronutr
- root_med_micronutr
- root_med_suppl
- root_med_ph
- root_med_regl
- root_med_solid
- salt_regm
- samp_capt_status
- samp_dis_stage
- salinity
- samp_store_dur
- samp_store_loc
- samp_store_temp
- season_environment
- standing_water_regm
- tiss_cult_growth_med
- water_temp_regm
- watering_regm
- host_symbiont
- misc_param
slot_usage:
  samp_name:
    name: samp_name
    required: true
  project_name:
    name: project_name
    required: true
  depth:
    name: depth
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - built environment
    - air
    - agriculture
    required: false
  elev:
    name: elev
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - built environment
    - air
    - agriculture
    required: false
  air_temp_regm:
    name: air_temp_regm
    domain_of:
    - plant-associated
    required: false
  ances_data:
    name: ances_data
    domain_of:
    - plant-associated
    - host-associated
    - food-farm environment
    - agriculture
    required: false
  antibiotic_regm:
    name: antibiotic_regm
    domain_of:
    - plant-associated
    required: false
  biol_stat:
    name: biol_stat
    domain_of:
    - plant-associated
    - host-associated
    required: false
  biotic_regm:
    name: biotic_regm
    domain_of:
    - plant-associated
    - food-farm environment
    required: false
  chem_administration:
    name: chem_administration
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-farm environment
    - air
    - agriculture
    required: false
  chem_mutagen:
    name: chem_mutagen
    domain_of:
    - plant-associated
    required: false
  climate_environment:
    name: climate_environment
    domain_of:
    - plant-associated
    - agriculture
    required: false
  cult_root_med:
    name: cult_root_med
    domain_of:
    - plant-associated
    required: false
  fertilizer_regm:
    name: fertilizer_regm
    domain_of:
    - plant-associated
    required: false
  fungicide_regm:
    name: fungicide_regm
    domain_of:
    - plant-associated
    - agriculture
    required: false
  gaseous_environment:
    name: gaseous_environment
    domain_of:
    - plant-associated
    - agriculture
    required: false
  genetic_mod:
    name: genetic_mod
    domain_of:
    - plant-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - agriculture
    required: false
  gravity:
    name: gravity
    domain_of:
    - plant-associated
    required: false
  growth_facil:
    name: growth_facil
    domain_of:
    - plant-associated
    required: false
  growth_habit:
    name: growth_habit
    domain_of:
    - plant-associated
    - food-farm environment
    required: false
  growth_hormone_regm:
    name: growth_hormone_regm
    domain_of:
    - plant-associated
    required: false
  herbicide_regm:
    name: herbicide_regm
    domain_of:
    - plant-associated
    - agriculture
    required: false
  host_age:
    name: host_age
    domain_of:
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-farm environment
    - agriculture
    required: false
  host_common_name:
    name: host_common_name
    domain_of:
    - symbiont-associated
    - plant-associated
    - host-associated
    - agriculture
    required: false
  host_disease_stat:
    name: host_disease_stat
    required: false
  host_dry_mass:
    name: host_dry_mass
    domain_of:
    - symbiont-associated
    - plant-associated
    - host-associated
    - food-farm environment
    - agriculture
    required: false
  host_genotype:
    name: host_genotype
    domain_of:
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-farm environment
    - agriculture
    required: false
  host_height:
    name: host_height
    domain_of:
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-farm environment
    - agriculture
    required: false
  host_subspecf_genlin:
    name: host_subspecf_genlin
    domain_of:
    - plant-associated
    - host-associated
    - food-farm environment
    - agriculture
    required: false
  host_length:
    name: host_length
    domain_of:
    - symbiont-associated
    - plant-associated
    - host-associated
    - food-farm environment
    - agriculture
    required: false
  host_life_stage:
    name: host_life_stage
    domain_of:
    - symbiont-associated
    - plant-associated
    - host-associated
    - agriculture
    required: false
  host_phenotype:
    name: host_phenotype
    domain_of:
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-farm environment
    - agriculture
    required: false
  host_taxid:
    name: host_taxid
    domain_of:
    - symbiont-associated
    - plant-associated
    - host-associated
    - food-farm environment
    - agriculture
    required: false
  host_tot_mass:
    name: host_tot_mass
    domain_of:
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-farm environment
    - agriculture
    required: false
  host_wet_mass:
    name: host_wet_mass
    domain_of:
    - plant-associated
    required: false
  humidity_regm:
    name: humidity_regm
    domain_of:
    - plant-associated
    required: false
  light_regm:
    name: light_regm
    domain_of:
    - plant-associated
    required: false
  mechanical_damage:
    name: mechanical_damage
    domain_of:
    - plant-associated
    - food-farm environment
    required: false
  mineral_nutr_regm:
    name: mineral_nutr_regm
    domain_of:
    - plant-associated
    required: false
  misc_param:
    name: misc_param
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - air
    - agriculture
    required: false
  non_min_nutr_regm:
    name: non_min_nutr_regm
    domain_of:
    - plant-associated
    required: false
  organism_count:
    name: organism_count
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - built environment
    - air
    - agriculture
    required: false
  oxy_stat_samp:
    name: oxy_stat_samp
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    - agriculture
    required: false
  ph_regm:
    name: ph_regm
    domain_of:
    - plant-associated
    - agriculture
    required: false
  perturbation:
    name: perturbation
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-farm environment
    - food-animal and animal feed
    - air
    - agriculture
    required: false
  pesticide_regm:
    name: pesticide_regm
    domain_of:
    - plant-associated
    - agriculture
    required: false
  plant_growth_med:
    name: plant_growth_med
    domain_of:
    - plant-associated
    - food-farm environment
    - agriculture
    required: false
  plant_product:
    name: plant_product
    domain_of:
    - plant-associated
    - agriculture
    required: false
  plant_sex:
    name: plant_sex
    domain_of:
    - plant-associated
    required: false
  plant_struc:
    name: plant_struc
    domain_of:
    - plant-associated
    - agriculture
    required: false
  radiation_regm:
    name: radiation_regm
    domain_of:
    - plant-associated
    required: false
  rainfall_regm:
    name: rainfall_regm
    domain_of:
    - plant-associated
    required: false
  root_cond:
    name: root_cond
    domain_of:
    - plant-associated
    - food-farm environment
    required: false
  root_med_carbon:
    name: root_med_carbon
    domain_of:
    - plant-associated
    - food-farm environment
    - agriculture
    required: false
  root_med_macronutr:
    name: root_med_macronutr
    domain_of:
    - plant-associated
    - food-farm environment
    - agriculture
    required: false
  root_med_micronutr:
    name: root_med_micronutr
    domain_of:
    - plant-associated
    - food-farm environment
    required: false
  root_med_suppl:
    name: root_med_suppl
    domain_of:
    - plant-associated
    required: false
  root_med_ph:
    name: root_med_ph
    domain_of:
    - plant-associated
    - food-farm environment
    - agriculture
    required: false
  root_med_regl:
    name: root_med_regl
    domain_of:
    - plant-associated
    required: false
  root_med_solid:
    name: root_med_solid
    domain_of:
    - plant-associated
    required: false
  salt_regm:
    name: salt_regm
    domain_of:
    - plant-associated
    - agriculture
    required: false
  samp_capt_status:
    name: samp_capt_status
    domain_of:
    - plant-associated
    - host-associated
    required: false
  samp_dis_stage:
    name: samp_dis_stage
    domain_of:
    - plant-associated
    - host-associated
    required: false
  salinity:
    name: salinity
    domain_of:
    - water
    - wastewater_sludge
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-farm environment
    - air
    required: false
  samp_store_dur:
    name: samp_store_dur
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    - agriculture
    required: false
  samp_store_loc:
    name: samp_store_loc
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    - agriculture
    required: false
  samp_store_temp:
    name: samp_store_temp
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    required: false
  samp_vol_we_dna_ext:
    name: samp_vol_we_dna_ext
    required: false
  season_environment:
    name: season_environment
    domain_of:
    - plant-associated
    - agriculture
    required: false
  standing_water_regm:
    name: standing_water_regm
    domain_of:
    - plant-associated
    - agriculture
    required: false
  temp:
    name: temp
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - built environment
    - air
    - agriculture
    required: false
  tiss_cult_growth_med:
    name: tiss_cult_growth_med
    domain_of:
    - plant-associated
    required: false
  water_temp_regm:
    name: water_temp_regm
    domain_of:
    - plant-associated
    - agriculture
    required: false
  watering_regm:
    name: watering_regm
    domain_of:
    - plant-associated
    - agriculture
    required: false
  host_symbiont:
    name: host_symbiont
    domain_of:
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - agriculture
    required: false

Induced

name: plant-associated
description: plant-associated
from_schema: http://w3id.org/mixs
slot_usage:
  samp_name:
    name: samp_name
    required: true
  project_name:
    name: project_name
    required: true
  depth:
    name: depth
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - built environment
    - air
    - agriculture
    required: false
  elev:
    name: elev
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - built environment
    - air
    - agriculture
    required: false
  air_temp_regm:
    name: air_temp_regm
    domain_of:
    - plant-associated
    required: false
  ances_data:
    name: ances_data
    domain_of:
    - plant-associated
    - host-associated
    - food-farm environment
    - agriculture
    required: false
  antibiotic_regm:
    name: antibiotic_regm
    domain_of:
    - plant-associated
    required: false
  biol_stat:
    name: biol_stat
    domain_of:
    - plant-associated
    - host-associated
    required: false
  biotic_regm:
    name: biotic_regm
    domain_of:
    - plant-associated
    - food-farm environment
    required: false
  chem_administration:
    name: chem_administration
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-farm environment
    - air
    - agriculture
    required: false
  chem_mutagen:
    name: chem_mutagen
    domain_of:
    - plant-associated
    required: false
  climate_environment:
    name: climate_environment
    domain_of:
    - plant-associated
    - agriculture
    required: false
  cult_root_med:
    name: cult_root_med
    domain_of:
    - plant-associated
    required: false
  fertilizer_regm:
    name: fertilizer_regm
    domain_of:
    - plant-associated
    required: false
  fungicide_regm:
    name: fungicide_regm
    domain_of:
    - plant-associated
    - agriculture
    required: false
  gaseous_environment:
    name: gaseous_environment
    domain_of:
    - plant-associated
    - agriculture
    required: false
  genetic_mod:
    name: genetic_mod
    domain_of:
    - plant-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - agriculture
    required: false
  gravity:
    name: gravity
    domain_of:
    - plant-associated
    required: false
  growth_facil:
    name: growth_facil
    domain_of:
    - plant-associated
    required: false
  growth_habit:
    name: growth_habit
    domain_of:
    - plant-associated
    - food-farm environment
    required: false
  growth_hormone_regm:
    name: growth_hormone_regm
    domain_of:
    - plant-associated
    required: false
  herbicide_regm:
    name: herbicide_regm
    domain_of:
    - plant-associated
    - agriculture
    required: false
  host_age:
    name: host_age
    domain_of:
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-farm environment
    - agriculture
    required: false
  host_common_name:
    name: host_common_name
    domain_of:
    - symbiont-associated
    - plant-associated
    - host-associated
    - agriculture
    required: false
  host_disease_stat:
    name: host_disease_stat
    required: false
  host_dry_mass:
    name: host_dry_mass
    domain_of:
    - symbiont-associated
    - plant-associated
    - host-associated
    - food-farm environment
    - agriculture
    required: false
  host_genotype:
    name: host_genotype
    domain_of:
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-farm environment
    - agriculture
    required: false
  host_height:
    name: host_height
    domain_of:
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-farm environment
    - agriculture
    required: false
  host_subspecf_genlin:
    name: host_subspecf_genlin
    domain_of:
    - plant-associated
    - host-associated
    - food-farm environment
    - agriculture
    required: false
  host_length:
    name: host_length
    domain_of:
    - symbiont-associated
    - plant-associated
    - host-associated
    - food-farm environment
    - agriculture
    required: false
  host_life_stage:
    name: host_life_stage
    domain_of:
    - symbiont-associated
    - plant-associated
    - host-associated
    - agriculture
    required: false
  host_phenotype:
    name: host_phenotype
    domain_of:
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-farm environment
    - agriculture
    required: false
  host_taxid:
    name: host_taxid
    domain_of:
    - symbiont-associated
    - plant-associated
    - host-associated
    - food-farm environment
    - agriculture
    required: false
  host_tot_mass:
    name: host_tot_mass
    domain_of:
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-farm environment
    - agriculture
    required: false
  host_wet_mass:
    name: host_wet_mass
    domain_of:
    - plant-associated
    required: false
  humidity_regm:
    name: humidity_regm
    domain_of:
    - plant-associated
    required: false
  light_regm:
    name: light_regm
    domain_of:
    - plant-associated
    required: false
  mechanical_damage:
    name: mechanical_damage
    domain_of:
    - plant-associated
    - food-farm environment
    required: false
  mineral_nutr_regm:
    name: mineral_nutr_regm
    domain_of:
    - plant-associated
    required: false
  misc_param:
    name: misc_param
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - air
    - agriculture
    required: false
  non_min_nutr_regm:
    name: non_min_nutr_regm
    domain_of:
    - plant-associated
    required: false
  organism_count:
    name: organism_count
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - built environment
    - air
    - agriculture
    required: false
  oxy_stat_samp:
    name: oxy_stat_samp
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    - agriculture
    required: false
  ph_regm:
    name: ph_regm
    domain_of:
    - plant-associated
    - agriculture
    required: false
  perturbation:
    name: perturbation
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-farm environment
    - food-animal and animal feed
    - air
    - agriculture
    required: false
  pesticide_regm:
    name: pesticide_regm
    domain_of:
    - plant-associated
    - agriculture
    required: false
  plant_growth_med:
    name: plant_growth_med
    domain_of:
    - plant-associated
    - food-farm environment
    - agriculture
    required: false
  plant_product:
    name: plant_product
    domain_of:
    - plant-associated
    - agriculture
    required: false
  plant_sex:
    name: plant_sex
    domain_of:
    - plant-associated
    required: false
  plant_struc:
    name: plant_struc
    domain_of:
    - plant-associated
    - agriculture
    required: false
  radiation_regm:
    name: radiation_regm
    domain_of:
    - plant-associated
    required: false
  rainfall_regm:
    name: rainfall_regm
    domain_of:
    - plant-associated
    required: false
  root_cond:
    name: root_cond
    domain_of:
    - plant-associated
    - food-farm environment
    required: false
  root_med_carbon:
    name: root_med_carbon
    domain_of:
    - plant-associated
    - food-farm environment
    - agriculture
    required: false
  root_med_macronutr:
    name: root_med_macronutr
    domain_of:
    - plant-associated
    - food-farm environment
    - agriculture
    required: false
  root_med_micronutr:
    name: root_med_micronutr
    domain_of:
    - plant-associated
    - food-farm environment
    required: false
  root_med_suppl:
    name: root_med_suppl
    domain_of:
    - plant-associated
    required: false
  root_med_ph:
    name: root_med_ph
    domain_of:
    - plant-associated
    - food-farm environment
    - agriculture
    required: false
  root_med_regl:
    name: root_med_regl
    domain_of:
    - plant-associated
    required: false
  root_med_solid:
    name: root_med_solid
    domain_of:
    - plant-associated
    required: false
  salt_regm:
    name: salt_regm
    domain_of:
    - plant-associated
    - agriculture
    required: false
  samp_capt_status:
    name: samp_capt_status
    domain_of:
    - plant-associated
    - host-associated
    required: false
  samp_dis_stage:
    name: samp_dis_stage
    domain_of:
    - plant-associated
    - host-associated
    required: false
  salinity:
    name: salinity
    domain_of:
    - water
    - wastewater_sludge
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-farm environment
    - air
    required: false
  samp_store_dur:
    name: samp_store_dur
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    - agriculture
    required: false
  samp_store_loc:
    name: samp_store_loc
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    - agriculture
    required: false
  samp_store_temp:
    name: samp_store_temp
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    required: false
  samp_vol_we_dna_ext:
    name: samp_vol_we_dna_ext
    required: false
  season_environment:
    name: season_environment
    domain_of:
    - plant-associated
    - agriculture
    required: false
  standing_water_regm:
    name: standing_water_regm
    domain_of:
    - plant-associated
    - agriculture
    required: false
  temp:
    name: temp
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - built environment
    - air
    - agriculture
    required: false
  tiss_cult_growth_med:
    name: tiss_cult_growth_med
    domain_of:
    - plant-associated
    required: false
  water_temp_regm:
    name: water_temp_regm
    domain_of:
    - plant-associated
    - agriculture
    required: false
  watering_regm:
    name: watering_regm
    domain_of:
    - plant-associated
    - agriculture
    required: false
  host_symbiont:
    name: host_symbiont
    domain_of:
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - agriculture
    required: false
attributes:
  lat_lon:
    name: lat_lon
    annotations:
      expected_value:
        tag: expected_value
        value: decimal degrees,  limit to 8 decimal points
    description: The geographical origin of the sample as defined by latitude and
      longitude. The values should be reported in decimal degrees and in WGS84 system
    title: geographic location (latitude and longitude)
    examples:
    - value: 50.586825 6.408977
    from_schema: http://w3id.org/mixs
    aliases:
    - geographic location (latitude and longitude)
    is_a: environment field
    string_serialization: '{float} {float}'
    slot_uri: MIXS:0000009
    multivalued: false
    alias: lat_lon
    owner: plant-associated
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    - built environment
    - air
    - agriculture
    range: string
  depth:
    name: depth
    description: The vertical distance below local surface, e.g. for sediment or soil
      samples depth is measured from sediment or soil surface, respectively. Depth
      can be reported as an interval for subsurface samples.
    title: depth
    from_schema: http://w3id.org/mixs
    is_a: environment field
    slot_uri: MIXS:0000018
    multivalued: false
    alias: depth
    owner: plant-associated
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - built environment
    - air
    - agriculture
    range: quantity value
    required: false
  alt:
    name: alt
    annotations:
      expected_value:
        tag: expected_value
        value: measurement value
    description: Altitude is a term used to identify heights of objects such as airplanes,
      space shuttles, rockets, atmospheric balloons and heights of places such as
      atmospheric layers and clouds. It is used to measure the height of an object
      which is above the earth's surface. In this context, the altitude measurement
      is the vertical distance between the earth's surface above sea level and the
      sampled position in the air
    title: altitude
    examples:
    - value: 100 meter
    from_schema: http://w3id.org/mixs
    aliases:
    - altitude
    is_a: environment field
    slot_uri: MIXS:0000094
    multivalued: false
    alias: alt
    owner: plant-associated
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - built environment
    - air
    - agriculture
    range: quantity value
  elev:
    name: elev
    description: Elevation of the sampling site is its height above a fixed reference
      point, most commonly the mean sea level. Elevation is mainly used when referring
      to points on the earth's surface, while altitude is used for points above the
      surface, such as an aircraft in flight or a spacecraft in orbit.
    title: elevation
    from_schema: http://w3id.org/mixs
    is_a: environment field
    slot_uri: MIXS:0000093
    multivalued: false
    alias: elev
    owner: plant-associated
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - built environment
    - air
    - agriculture
    range: quantity value
    required: false
  temp:
    name: temp
    description: Temperature of the sample at the time of sampling.
    title: temperature
    from_schema: http://w3id.org/mixs
    is_a: environment field
    slot_uri: MIXS:0000113
    multivalued: false
    alias: temp
    owner: plant-associated
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - built environment
    - air
    - agriculture
    range: quantity value
    required: false
  geo_loc_name:
    name: geo_loc_name
    annotations:
      expected_value:
        tag: expected_value
        value: 'country or sea name (INSDC or GAZ): region(GAZ), specific location
          name'
    description: The geographical origin of the sample as defined by the country or
      sea name followed by specific region name. Country or sea names should be chosen
      from the INSDC country list (http://insdc.org/country.html), or the GAZ ontology
      (http://purl.bioontology.org/ontology/GAZ)
    title: geographic location (country and/or sea,region)
    examples:
    - value: 'USA: Maryland, Bethesda'
    from_schema: http://w3id.org/mixs
    aliases:
    - geographic location (country and/or sea,region)
    is_a: environment field
    string_serialization: '{term}: {term}, {text}'
    slot_uri: MIXS:0000010
    multivalued: false
    alias: geo_loc_name
    owner: plant-associated
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    - built environment
    - air
    - agriculture
    range: string
  collection_date:
    name: collection_date
    annotations:
      expected_value:
        tag: expected_value
        value: date and time
    description: 'The time of sampling, either as an instance (single point in time)
      or interval. In case no exact time is available, the date/time can be right
      truncated i.e. all of these are valid times: 2008-01-23T19:23:10+00:00; 2008-01-23T19:23:10;
      2008-01-23; 2008-01; 2008; Except: 2008-01; 2008 all are ISO8601 compliant'
    title: collection date
    examples:
    - value: 2018-05-11T10:00:00+01:00; 2018-05-11
    from_schema: http://w3id.org/mixs
    aliases:
    - collection date
    is_a: environment field
    slot_uri: MIXS:0000011
    multivalued: false
    alias: collection_date
    owner: plant-associated
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    - built environment
    - air
    - agriculture
    range: date
  env_broad_scale:
    name: env_broad_scale
    annotations:
      expected_value:
        tag: expected_value
        value: The major environment type(s) where the sample was collected. Recommend
          subclasses of biome [ENVO:00000428]. Multiple terms can be separated by
          one or more pipes.
    description: 'Report the major environmental system the sample or specimen came
      from. The system(s) identified should have a coarse spatial grain, to provide
      the general environmental context of where the sampling was done (e.g. in the
      desert or a rainforest). We recommend using subclasses of EnvO’s biome class:  http://purl.obolibrary.org/obo/ENVO_00000428.
      EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS'
    title: broad-scale environmental context
    examples:
    - value: oceanic epipelagic zone biome [ENVO:01000033] for annotating a water
        sample from the photic zone in middle of the Atlantic Ocean
    from_schema: http://w3id.org/mixs
    aliases:
    - broad-scale environmental context
    is_a: environment field
    string_serialization: '{termLabel} {[termID]}'
    slot_uri: MIXS:0000012
    multivalued: false
    alias: env_broad_scale
    owner: plant-associated
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    - built environment
    - air
    - agriculture
    range: string
  env_local_scale:
    name: env_local_scale
    annotations:
      expected_value:
        tag: expected_value
        value: Environmental entities having causal influences upon the entity at
          time of sampling.
    description: 'Report the entity or entities which are in the sample or specimen’s
      local vicinity and which you believe have significant causal influences on your
      sample or specimen. We recommend using EnvO terms which are of smaller spatial
      grain than your entry for env_broad_scale. Terms, such as anatomical sites,
      from other OBO Library ontologies which interoperate with EnvO (e.g. UBERON)
      are accepted in this field. EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS.'
    title: local environmental context
    examples:
    - value: 'litter layer [ENVO:01000338]; Annotating a pooled sample taken from
        various vegetation layers in a forest consider: canopy [ENVO:00000047]|herb
        and fern layer [ENVO:01000337]|litter layer [ENVO:01000338]|understory [01000335]|shrub
        layer [ENVO:01000336].'
    from_schema: http://w3id.org/mixs
    aliases:
    - local environmental context
    is_a: environment field
    string_serialization: '{termLabel} {[termID]}'
    slot_uri: MIXS:0000013
    multivalued: false
    alias: env_local_scale
    owner: plant-associated
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    - built environment
    - air
    - agriculture
    range: string
  env_medium:
    name: env_medium
    annotations:
      expected_value:
        tag: expected_value
        value: The material displaced by the entity at time of sampling. Recommend
          subclasses of environmental material [ENVO:00010483].
    description: 'Report the environmental material(s) immediately surrounding the
      sample or specimen at the time of sampling. We recommend using subclasses of
      ''environmental material'' (http://purl.obolibrary.org/obo/ENVO_00010483). EnvO
      documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS
      . Terms from other OBO ontologies are permissible as long as they reference
      mass/volume nouns (e.g. air, water, blood) and not discrete, countable entities
      (e.g. a tree, a leaf, a table top).'
    title: environmental medium
    examples:
    - value: 'soil [ENVO:00001998]; Annotating a fish swimming in the upper 100 m
        of the Atlantic Ocean, consider: ocean water [ENVO:00002151]. Example: Annotating
        a duck on a pond consider: pond water [ENVO:00002228]|air [ENVO_00002005]'
    from_schema: http://w3id.org/mixs
    aliases:
    - environmental medium
    is_a: environment field
    string_serialization: '{termLabel} {[termID]}'
    slot_uri: MIXS:0000014
    multivalued: false
    alias: env_medium
    owner: plant-associated
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    - built environment
    - air
    - agriculture
    range: string
  air_temp_regm:
    name: air_temp_regm
    description: Information about treatment involving an exposure to varying temperatures;
      should include the temperature, treatment regimen including how many times the
      treatment was repeated, how long each treatment lasted, and the start and end
      time of the entire treatment; can include different temperature regimens
    title: air temperature regimen
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{float} {unit};{Rn/start_time/end_time/duration}'
    slot_uri: MIXS:0000551
    multivalued: true
    alias: air_temp_regm
    owner: plant-associated
    domain_of:
    - plant-associated
    range: string
    required: false
  ances_data:
    name: ances_data
    description: Information about either pedigree or other ancestral information
      description (e.g. parental variety in case of mutant or selection), e.g. A/3*B
      (meaning [(A x B) x B] x B)
    title: ancestral data
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0000247
    multivalued: false
    alias: ances_data
    owner: plant-associated
    domain_of:
    - plant-associated
    - host-associated
    - food-farm environment
    - agriculture
    range: string
    required: false
  antibiotic_regm:
    name: antibiotic_regm
    description: Information about treatment involving antibiotic administration;
      should include the name of antibiotic, amount administered, treatment regimen
      including how many times the treatment was repeated, how long each treatment
      lasted, and the start and end time of the entire treatment; can include multiple
      antibiotic regimens
    title: antibiotic regimen
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}'
    slot_uri: MIXS:0000553
    multivalued: true
    alias: antibiotic_regm
    owner: plant-associated
    domain_of:
    - plant-associated
    range: string
    required: false
  biol_stat:
    name: biol_stat
    description: The level of genome modification.
    title: biological status
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000858
    multivalued: false
    alias: biol_stat
    owner: plant-associated
    domain_of:
    - plant-associated
    - host-associated
    range: biol_stat_enum
    required: false
  biotic_regm:
    name: biotic_regm
    description: Information about treatment(s) involving use of biotic factors, such
      as bacteria, viruses or fungi.
    title: biotic regimen
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0001038
    multivalued: false
    alias: biotic_regm
    owner: plant-associated
    domain_of:
    - plant-associated
    - food-farm environment
    range: string
    required: false
  chem_administration:
    name: chem_administration
    description: List of chemical compounds administered to the host or site where
      sampling occurred, and when (e.g. Antibiotics, n fertilizer, air filter); can
      include multiple compounds. For chemical entities of biological interest ontology
      (chebi) (v 163), http://purl.bioontology.org/ontology/chebi
    title: chemical administration
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{termLabel} {[termID]};{timestamp}'
    slot_uri: MIXS:0000751
    multivalued: true
    alias: chem_administration
    owner: plant-associated
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-farm environment
    - air
    - agriculture
    range: string
    required: false
  chem_mutagen:
    name: chem_mutagen
    description: Treatment involving use of mutagens; should include the name of mutagen,
      amount administered, treatment regimen including how many times the treatment
      was repeated, how long each treatment lasted, and the start and end time of
      the entire treatment; can include multiple mutagen regimens
    title: chemical mutagen
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}'
    slot_uri: MIXS:0000555
    multivalued: true
    alias: chem_mutagen
    owner: plant-associated
    domain_of:
    - plant-associated
    range: string
    required: false
  climate_environment:
    name: climate_environment
    description: Treatment involving an exposure to a particular climate; treatment
      regimen including how many times the treatment was repeated, how long each treatment
      lasted, and the start and end time of the entire treatment; can include multiple
      climates
    title: climate environment
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{Rn/start_time/end_time/duration}'
    slot_uri: MIXS:0001040
    multivalued: true
    alias: climate_environment
    owner: plant-associated
    domain_of:
    - plant-associated
    - agriculture
    range: string
    required: false
  cult_root_med:
    name: cult_root_med
    description: Name or reference for the hydroponic or in vitro culture rooting
      medium; can be the name of a commonly used medium or reference to a specific
      medium, e.g. Murashige and Skoog medium. If the medium has not been formally
      published, use the rooting medium descriptors.
    title: culture rooting medium
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}|{PMID}|{DOI}|{URL}'
    slot_uri: MIXS:0001041
    multivalued: false
    alias: cult_root_med
    owner: plant-associated
    domain_of:
    - plant-associated
    range: string
    required: false
  fertilizer_regm:
    name: fertilizer_regm
    description: Information about treatment involving the use of fertilizers; should
      include the name of fertilizer, amount administered, treatment regimen including
      how many times the treatment was repeated, how long each treatment lasted, and
      the start and end time of the entire treatment; can include multiple fertilizer
      regimens
    title: fertilizer regimen
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}'
    slot_uri: MIXS:0000556
    multivalued: true
    alias: fertilizer_regm
    owner: plant-associated
    domain_of:
    - plant-associated
    range: string
    required: false
  fungicide_regm:
    name: fungicide_regm
    description: Information about treatment involving use of fungicides; should include
      the name of fungicide, amount administered, treatment regimen including how
      many times the treatment was repeated, how long each treatment lasted, and the
      start and end time of the entire treatment; can include multiple fungicide regimens
    title: fungicide regimen
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}'
    slot_uri: MIXS:0000557
    multivalued: true
    alias: fungicide_regm
    owner: plant-associated
    domain_of:
    - plant-associated
    - agriculture
    range: string
    required: false
  gaseous_environment:
    name: gaseous_environment
    description: Use of conditions with differing gaseous environments; should include
      the name of gaseous compound, amount administered, treatment duration, interval
      and total experimental duration; can include multiple gaseous environment regimens
    title: gaseous environment
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}'
    slot_uri: MIXS:0000558
    multivalued: true
    alias: gaseous_environment
    owner: plant-associated
    domain_of:
    - plant-associated
    - agriculture
    range: string
    required: false
  genetic_mod:
    name: genetic_mod
    description: Genetic modifications of the genome of an organism, which may occur
      naturally by spontaneous mutation, or be introduced by some experimental means,
      e.g. specification of a transgene or the gene knocked-out or details of transient
      transfection
    title: genetic modification
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{PMID}|{DOI}|{URL}|{text}'
    slot_uri: MIXS:0000859
    multivalued: false
    alias: genetic_mod
    owner: plant-associated
    domain_of:
    - plant-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - agriculture
    range: string
    required: false
  gravity:
    name: gravity
    description: Information about treatment involving use of gravity factor to study
      various types of responses in presence, absence or modified levels of gravity;
      treatment regimen including how many times the treatment was repeated, how long
      each treatment lasted, and the start and end time of the entire treatment; can
      include multiple treatments
    title: gravity
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{float} {unit};{Rn/start_time/end_time/duration}'
    slot_uri: MIXS:0000559
    multivalued: true
    alias: gravity
    owner: plant-associated
    domain_of:
    - plant-associated
    range: string
    required: false
  growth_facil:
    name: growth_facil
    description: 'Type of facility where the sampled plant was grown; controlled vocabulary:
      growth chamber, open top chamber, glasshouse, experimental garden, field. Alternatively
      use Crop Ontology (CO) terms, see http://www.cropontology.org/ontology/CO_715/Crop%20Research'
    title: growth facility
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}|{termLabel} {[termID]}'
    slot_uri: MIXS:0001043
    multivalued: false
    alias: growth_facil
    owner: plant-associated
    domain_of:
    - plant-associated
    range: string
    required: false
  growth_habit:
    name: growth_habit
    description: Characteristic shape, appearance or growth form of a plant species
    title: growth habit
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0001044
    multivalued: false
    alias: growth_habit
    owner: plant-associated
    domain_of:
    - plant-associated
    - food-farm environment
    range: growth_habit_enum
    required: false
  growth_hormone_regm:
    name: growth_hormone_regm
    description: Information about treatment involving use of growth hormones; should
      include the name of growth hormone, amount administered, treatment regimen including
      how many times the treatment was repeated, how long each treatment lasted, and
      the start and end time of the entire treatment; can include multiple growth
      hormone regimens
    title: growth hormone regimen
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}'
    slot_uri: MIXS:0000560
    multivalued: true
    alias: growth_hormone_regm
    owner: plant-associated
    domain_of:
    - plant-associated
    range: string
    required: false
  herbicide_regm:
    name: herbicide_regm
    description: Information about treatment involving use of herbicides; information
      about treatment involving use of growth hormones; should include the name of
      herbicide, amount administered, treatment regimen including how many times the
      treatment was repeated, how long each treatment lasted, and the start and end
      time of the entire treatment; can include multiple regimens
    title: herbicide regimen
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}'
    slot_uri: MIXS:0000561
    multivalued: true
    alias: herbicide_regm
    owner: plant-associated
    domain_of:
    - plant-associated
    - agriculture
    range: string
    required: false
  host_age:
    name: host_age
    description: Age of host at the time of sampling; relevant scale depends on species
      and study, e.g. Could be seconds for amoebae or centuries for trees
    title: host age
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000255
    multivalued: false
    alias: host_age
    owner: plant-associated
    domain_of:
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-farm environment
    - agriculture
    range: quantity value
    required: false
  host_common_name:
    name: host_common_name
    description: Common name of the host.
    title: host common name
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0000248
    multivalued: false
    alias: host_common_name
    owner: plant-associated
    domain_of:
    - symbiont-associated
    - plant-associated
    - host-associated
    - agriculture
    range: string
    required: false
  host_dry_mass:
    name: host_dry_mass
    description: Measurement of dry mass
    title: host dry mass
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000257
    multivalued: false
    alias: host_dry_mass
    owner: plant-associated
    domain_of:
    - symbiont-associated
    - plant-associated
    - host-associated
    - food-farm environment
    - agriculture
    range: quantity value
    required: false
  host_genotype:
    name: host_genotype
    description: Observed genotype
    title: host genotype
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0000365
    multivalued: false
    alias: host_genotype
    owner: plant-associated
    domain_of:
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-farm environment
    - agriculture
    range: string
    required: false
  host_height:
    name: host_height
    description: The height of subject
    title: host height
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000264
    multivalued: false
    alias: host_height
    owner: plant-associated
    domain_of:
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-farm environment
    - agriculture
    range: quantity value
    required: false
  host_subspecf_genlin:
    name: host_subspecf_genlin
    description: Information about the genetic distinctness of the host organism below
      the subspecies level e.g., serovar, serotype, biotype, ecotype, variety, cultivar,
      or any relevant genetic typing schemes like Group I plasmid. Subspecies should
      not be recorded in this term, but in the NCBI taxonomy. Supply both the lineage
      name and the lineage rank separated by a colon, e.g., biovar:abc123.
    title: host subspecific genetic lineage
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{rank name}:{text}'
    slot_uri: MIXS:0001318
    multivalued: true
    alias: host_subspecf_genlin
    owner: plant-associated
    domain_of:
    - plant-associated
    - host-associated
    - food-farm environment
    - agriculture
    range: string
    required: false
  host_length:
    name: host_length
    description: The length of subject
    title: host length
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000256
    multivalued: false
    alias: host_length
    owner: plant-associated
    domain_of:
    - symbiont-associated
    - plant-associated
    - host-associated
    - food-farm environment
    - agriculture
    range: quantity value
    required: false
  host_life_stage:
    name: host_life_stage
    description: Description of life stage of host
    title: host life stage
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0000251
    multivalued: false
    alias: host_life_stage
    owner: plant-associated
    domain_of:
    - symbiont-associated
    - plant-associated
    - host-associated
    - agriculture
    range: string
    required: false
  host_phenotype:
    name: host_phenotype
    description: Phenotype of human or other host. For phenotypic quality ontology
      (pato) (v 2018-03-27) terms, please see http://purl.bioontology.org/ontology/pato.
      For Human Phenotype Ontology (HP) (v 2018-06-13) please see http://purl.bioontology.org/ontology/HP
    title: host phenotype
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{termLabel} {[termID]}'
    slot_uri: MIXS:0000874
    multivalued: false
    alias: host_phenotype
    owner: plant-associated
    domain_of:
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-farm environment
    - agriculture
    range: string
    required: false
  host_taxid:
    name: host_taxid
    description: NCBI taxon id of the host, e.g. 9606
    title: host taxid
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{NCBI taxid}'
    slot_uri: MIXS:0000250
    multivalued: false
    alias: host_taxid
    owner: plant-associated
    domain_of:
    - symbiont-associated
    - plant-associated
    - host-associated
    - food-farm environment
    - agriculture
    range: string
    required: false
  host_tot_mass:
    name: host_tot_mass
    description: Total mass of the host at collection, the unit depends on host
    title: host total mass
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000263
    multivalued: false
    alias: host_tot_mass
    owner: plant-associated
    domain_of:
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-farm environment
    - agriculture
    range: quantity value
    required: false
  host_wet_mass:
    name: host_wet_mass
    description: Measurement of wet mass
    title: host wet mass
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000567
    multivalued: false
    alias: host_wet_mass
    owner: plant-associated
    domain_of:
    - plant-associated
    range: quantity value
    required: false
  humidity_regm:
    name: humidity_regm
    description: Information about treatment involving an exposure to varying degree
      of humidity; information about treatment involving use of growth hormones; should
      include amount of humidity administered, treatment regimen including how many
      times the treatment was repeated, how long each treatment lasted, and the start
      and end time of the entire treatment; can include multiple regimens
    title: humidity regimen
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{float} {unit};{Rn/start_time/end_time/duration}'
    slot_uri: MIXS:0000568
    multivalued: true
    alias: humidity_regm
    owner: plant-associated
    domain_of:
    - plant-associated
    range: string
    required: false
  light_regm:
    name: light_regm
    description: Information about treatment(s) involving exposure to light, including
      both light intensity and quality.
    title: light regimen
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{float} {unit};{float} {unit}'
    slot_uri: MIXS:0000569
    multivalued: false
    alias: light_regm
    owner: plant-associated
    domain_of:
    - plant-associated
    range: string
    required: false
  mechanical_damage:
    name: mechanical_damage
    description: Information about any mechanical damage exerted on the plant; can
      include multiple damages and sites
    title: mechanical damage
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{text}'
    slot_uri: MIXS:0001052
    multivalued: true
    alias: mechanical_damage
    owner: plant-associated
    domain_of:
    - plant-associated
    - food-farm environment
    range: string
    required: false
  mineral_nutr_regm:
    name: mineral_nutr_regm
    description: Information about treatment involving the use of mineral supplements;
      should include the name of mineral nutrient, amount administered, treatment
      regimen including how many times the treatment was repeated, how long each treatment
      lasted, and the start and end time of the entire treatment; can include multiple
      mineral nutrient regimens
    title: mineral nutrient regimen
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}'
    slot_uri: MIXS:0000570
    multivalued: true
    alias: mineral_nutr_regm
    owner: plant-associated
    domain_of:
    - plant-associated
    range: string
    required: false
  misc_param:
    name: misc_param
    description: Any other measurement performed or parameter collected, that is not
      listed here
    title: miscellaneous parameter
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{float} {unit}'
    slot_uri: MIXS:0000752
    multivalued: true
    alias: misc_param
    owner: plant-associated
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - air
    - agriculture
    range: string
    required: false
  non_min_nutr_regm:
    name: non_min_nutr_regm
    description: Information about treatment involving the exposure of plant to non-mineral
      nutrient such as oxygen, hydrogen or carbon; should include the name of non-mineral
      nutrient, amount administered, treatment regimen including how many times the
      treatment was repeated, how long each treatment lasted, and the start and end
      time of the entire treatment; can include multiple non-mineral nutrient regimens
    title: non-mineral nutrient regimen
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}'
    slot_uri: MIXS:0000571
    multivalued: true
    alias: non_min_nutr_regm
    owner: plant-associated
    domain_of:
    - plant-associated
    range: string
    required: false
  organism_count:
    name: organism_count
    description: 'Total cell count of any organism (or group of organisms) per gram,
      volume or area of sample, should include name of organism followed by count.
      The method that was used for the enumeration (e.g. qPCR, atp, mpn, etc.) Should
      also be provided. (example: total prokaryotes; 3.5e7 cells per ml; qpcr)'
    title: organism count
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000103
    multivalued: true
    alias: organism_count
    owner: plant-associated
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - built environment
    - air
    - agriculture
    range: organism_count_enum
    required: false
  oxy_stat_samp:
    name: oxy_stat_samp
    description: Oxygenation status of sample
    title: oxygenation status of sample
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000753
    multivalued: false
    alias: oxy_stat_samp
    owner: plant-associated
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    - agriculture
    range: oxy_stat_samp_enum
    required: false
  ph_regm:
    name: ph_regm
    description: Information about treatment involving exposure of plants to varying
      levels of ph of the growth media, treatment regimen including how many times
      the treatment was repeated, how long each treatment lasted, and the start and
      end time of the entire treatment; can include multiple regimen
    title: pH regimen
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{float};{Rn/start_time/end_time/duration}'
    slot_uri: MIXS:0001056
    multivalued: true
    alias: ph_regm
    owner: plant-associated
    domain_of:
    - plant-associated
    - agriculture
    range: string
    required: false
  perturbation:
    name: perturbation
    description: Type of perturbation, e.g. chemical administration, physical disturbance,
      etc., coupled with perturbation regimen including how many times the perturbation
      was repeated, how long each perturbation lasted, and the start and end time
      of the entire perturbation period; can include multiple perturbation types
    title: perturbation
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{Rn/start_time/end_time/duration}'
    slot_uri: MIXS:0000754
    multivalued: true
    alias: perturbation
    owner: plant-associated
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-farm environment
    - food-animal and animal feed
    - air
    - agriculture
    range: string
    required: false
  pesticide_regm:
    name: pesticide_regm
    description: Information about treatment involving use of insecticides; should
      include the name of pesticide, amount administered, treatment regimen including
      how many times the treatment was repeated, how long each treatment lasted, and
      the start and end time of the entire treatment; can include multiple pesticide
      regimens
    title: pesticide regimen
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}'
    slot_uri: MIXS:0000573
    multivalued: true
    alias: pesticide_regm
    owner: plant-associated
    domain_of:
    - plant-associated
    - agriculture
    range: string
    required: false
  plant_growth_med:
    name: plant_growth_med
    description: Specification of the media for growing the plants or tissue cultured
      samples, e.g. soil, aeroponic, hydroponic, in vitro solid culture medium, in
      vitro liquid culture medium. Recommended value is a specific value from EO:plant
      growth medium (follow this link for terms http://purl.obolibrary.org/obo/EO_0007147)
      or other controlled vocabulary
    title: plant growth medium
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0001057
    multivalued: false
    alias: plant_growth_med
    owner: plant-associated
    domain_of:
    - plant-associated
    - food-farm environment
    - agriculture
    range: plant_growth_med_enum
    required: false
  plant_product:
    name: plant_product
    description: Substance produced by the plant, where the sample was obtained from
    title: plant product
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0001058
    multivalued: false
    alias: plant_product
    owner: plant-associated
    domain_of:
    - plant-associated
    - agriculture
    range: string
    required: false
  plant_sex:
    name: plant_sex
    description: Sex of the reproductive parts on the whole plant, e.g. pistillate,
      staminate, monoecieous, hermaphrodite.
    title: plant sex
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0001059
    multivalued: false
    alias: plant_sex
    owner: plant-associated
    domain_of:
    - plant-associated
    range: plant_sex_enum
    required: false
  plant_struc:
    name: plant_struc
    description: Name of plant structure the sample was obtained from; for Plant Ontology
      (PO) (v releases/2017-12-14) terms, see http://purl.bioontology.org/ontology/PO,
      e.g. petiole epidermis (PO_0000051). If an individual flower is sampled, the
      sex of it can be recorded here.
    title: plant structure
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{termLabel} {[termID]}'
    slot_uri: MIXS:0001060
    multivalued: false
    alias: plant_struc
    owner: plant-associated
    domain_of:
    - plant-associated
    - agriculture
    range: string
    required: false
  radiation_regm:
    name: radiation_regm
    description: Information about treatment involving exposure of plant or a plant
      part to a particular radiation regimen; should include the radiation type, amount
      or intensity administered, treatment regimen including how many times the treatment
      was repeated, how long each treatment lasted, and the start and end time of
      the entire treatment; can include multiple radiation regimens
    title: radiation regimen
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}'
    slot_uri: MIXS:0000575
    multivalued: true
    alias: radiation_regm
    owner: plant-associated
    domain_of:
    - plant-associated
    range: string
    required: false
  rainfall_regm:
    name: rainfall_regm
    description: Information about treatment involving an exposure to a given amount
      of rainfall, treatment regimen including how many times the treatment was repeated,
      how long each treatment lasted, and the start and end time of the entire treatment;
      can include multiple regimens
    title: rainfall regimen
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{float} {unit};{Rn/start_time/end_time/duration}'
    slot_uri: MIXS:0000576
    multivalued: true
    alias: rainfall_regm
    owner: plant-associated
    domain_of:
    - plant-associated
    range: string
    required: false
  root_cond:
    name: root_cond
    description: Relevant rooting conditions such as field plot size, sowing density,
      container dimensions, number of plants per container.
    title: rooting conditions
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{PMID}|{DOI}|{URL}|{text}'
    slot_uri: MIXS:0001061
    multivalued: false
    alias: root_cond
    owner: plant-associated
    domain_of:
    - plant-associated
    - food-farm environment
    range: string
    required: false
  root_med_carbon:
    name: root_med_carbon
    description: Source of organic carbon in the culture rooting medium; e.g. sucrose.
    title: rooting medium carbon
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{float} {unit}'
    slot_uri: MIXS:0000577
    multivalued: false
    alias: root_med_carbon
    owner: plant-associated
    domain_of:
    - plant-associated
    - food-farm environment
    - agriculture
    range: string
    required: false
  root_med_macronutr:
    name: root_med_macronutr
    description: Measurement of the culture rooting medium macronutrients (N,P, K,
      Ca, Mg, S); e.g. KH2PO4 (170¬†mg/L).
    title: rooting medium macronutrients
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{float} {unit}'
    slot_uri: MIXS:0000578
    multivalued: false
    alias: root_med_macronutr
    owner: plant-associated
    domain_of:
    - plant-associated
    - food-farm environment
    - agriculture
    range: string
    required: false
  root_med_micronutr:
    name: root_med_micronutr
    description: Measurement of the culture rooting medium micronutrients (Fe, Mn,
      Zn, B, Cu, Mo); e.g. H3BO3 (6.2¬†mg/L).
    title: rooting medium micronutrients
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{float} {unit}'
    slot_uri: MIXS:0000579
    multivalued: false
    alias: root_med_micronutr
    owner: plant-associated
    domain_of:
    - plant-associated
    - food-farm environment
    range: string
    required: false
  root_med_suppl:
    name: root_med_suppl
    description: Organic supplements of the culture rooting medium, such as vitamins,
      amino acids, organic acids, antibiotics activated charcoal; e.g. nicotinic acid
      (0.5¬†mg/L).
    title: rooting medium organic supplements
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{float} {unit}'
    slot_uri: MIXS:0000580
    multivalued: false
    alias: root_med_suppl
    owner: plant-associated
    domain_of:
    - plant-associated
    range: string
    required: false
  root_med_ph:
    name: root_med_ph
    description: pH measurement of the culture rooting medium; e.g. 5.5.
    title: rooting medium pH
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0001062
    multivalued: false
    alias: root_med_ph
    owner: plant-associated
    domain_of:
    - plant-associated
    - food-farm environment
    - agriculture
    range: double
    required: false
  root_med_regl:
    name: root_med_regl
    description: Growth regulators in the culture rooting medium such as cytokinins,
      auxins, gybberellins, abscisic acid; e.g. 0.5¬†mg/L NAA.
    title: rooting medium regulators
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{float} {unit}'
    slot_uri: MIXS:0000581
    multivalued: false
    alias: root_med_regl
    owner: plant-associated
    domain_of:
    - plant-associated
    range: string
    required: false
  root_med_solid:
    name: root_med_solid
    description: Specification of the solidifying agent in the culture rooting medium;
      e.g. agar.
    title: rooting medium solidifier
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0001063
    multivalued: false
    alias: root_med_solid
    owner: plant-associated
    domain_of:
    - plant-associated
    range: string
    required: false
  salt_regm:
    name: salt_regm
    description: Information about treatment involving use of salts as supplement
      to liquid and soil growth media; should include the name of salt, amount administered,
      treatment regimen including how many times the treatment was repeated, how long
      each treatment lasted, and the start and end time of the entire treatment; can
      include multiple salt regimens
    title: salt regimen
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{float} {unit};{Rn/start_time/end_time/duration}'
    slot_uri: MIXS:0000582
    multivalued: true
    alias: salt_regm
    owner: plant-associated
    domain_of:
    - plant-associated
    - agriculture
    range: string
    required: false
  samp_capt_status:
    name: samp_capt_status
    description: Reason for the sample
    title: sample capture status
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000860
    multivalued: false
    alias: samp_capt_status
    owner: plant-associated
    domain_of:
    - plant-associated
    - host-associated
    range: samp_capt_status_enum
    required: false
  samp_dis_stage:
    name: samp_dis_stage
    description: Stage of the disease at the time of sample collection, e.g. inoculation,
      penetration, infection, growth and reproduction, dissemination of pathogen.
    title: sample disease stage
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000249
    multivalued: false
    alias: samp_dis_stage
    owner: plant-associated
    domain_of:
    - plant-associated
    - host-associated
    range: samp_dis_stage_enum
    required: false
  salinity:
    name: salinity
    description: The total concentration of all dissolved salts in a liquid or solid
      sample. While salinity can be measured by a complete chemical analysis, this
      method is difficult and time consuming. More often, it is instead derived from
      the conductivity measurement. This is known as practical salinity. These derivations
      compare the specific conductance of the sample to a salinity standard such as
      seawater.
    title: salinity
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000183
    multivalued: false
    alias: salinity
    owner: plant-associated
    domain_of:
    - water
    - wastewater_sludge
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-farm environment
    - air
    range: quantity value
    required: false
  samp_store_dur:
    name: samp_store_dur
    description: Duration for which the sample was stored
    title: sample storage duration
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{duration}'
    slot_uri: MIXS:0000116
    multivalued: false
    alias: samp_store_dur
    owner: plant-associated
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    - agriculture
    range: string
    required: false
  samp_store_loc:
    name: samp_store_loc
    description: Location at which sample was stored, usually name of a specific freezer/room
    title: sample storage location
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0000755
    multivalued: false
    alias: samp_store_loc
    owner: plant-associated
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    - agriculture
    range: string
    required: false
  samp_store_temp:
    name: samp_store_temp
    description: Temperature at which sample was stored, e.g. -80 degree Celsius
    title: sample storage temperature
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000110
    multivalued: false
    alias: samp_store_temp
    owner: plant-associated
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    range: quantity value
    required: false
  season_environment:
    name: season_environment
    description: Treatment involving an exposure to a particular season (e.g. Winter,
      summer, rabi, rainy etc.), treatment regimen including how many times the treatment
      was repeated, how long each treatment lasted, and the start and end time of
      the entire treatment
    title: seasonal environment
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{Rn/start_time/end_time/duration}'
    slot_uri: MIXS:0001068
    multivalued: true
    alias: season_environment
    owner: plant-associated
    domain_of:
    - plant-associated
    - agriculture
    range: string
    required: false
  standing_water_regm:
    name: standing_water_regm
    description: Treatment involving an exposure to standing water during a plant's
      life span, types can be flood water or standing water, treatment regimen including
      how many times the treatment was repeated, how long each treatment lasted, and
      the start and end time of the entire treatment; can include multiple regimens
    title: standing water regimen
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{Rn/start_time/end_time/duration}'
    slot_uri: MIXS:0001069
    multivalued: true
    alias: standing_water_regm
    owner: plant-associated
    domain_of:
    - plant-associated
    - agriculture
    range: string
    required: false
  tiss_cult_growth_med:
    name: tiss_cult_growth_med
    description: Description of plant tissue culture growth media used
    title: tissue culture growth media
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{PMID}|{DOI}|{URL}|{text}'
    slot_uri: MIXS:0001070
    multivalued: false
    alias: tiss_cult_growth_med
    owner: plant-associated
    domain_of:
    - plant-associated
    range: string
    required: false
  water_temp_regm:
    name: water_temp_regm
    description: Information about treatment involving an exposure to water with varying
      degree of temperature, treatment regimen including how many times the treatment
      was repeated, how long each treatment lasted, and the start and end time of
      the entire treatment; can include multiple regimens
    title: water temperature regimen
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{float} {unit};{Rn/start_time/end_time/duration}'
    slot_uri: MIXS:0000590
    multivalued: true
    alias: water_temp_regm
    owner: plant-associated
    domain_of:
    - plant-associated
    - agriculture
    range: string
    required: false
  watering_regm:
    name: watering_regm
    description: Information about treatment involving an exposure to watering frequencies,
      treatment regimen including how many times the treatment was repeated, how long
      each treatment lasted, and the start and end time of the entire treatment; can
      include multiple regimens
    title: watering regimen
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{float} {unit};{Rn/start_time/end_time/duration}'
    slot_uri: MIXS:0000591
    multivalued: true
    alias: watering_regm
    owner: plant-associated
    domain_of:
    - plant-associated
    - agriculture
    range: string
    required: false
  host_symbiont:
    name: host_symbiont
    description: The taxonomic name of the organism(s) found living in mutualistic,
      commensalistic, or parasitic symbiosis with the specific host.
    title: observed host symbionts
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0001298
    multivalued: true
    alias: host_symbiont
    owner: plant-associated
    domain_of:
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - agriculture
    range: string
    required: false