Class: Symbiont-associated

symbiont-associated

Inheritance

Symbiont-associated

Slots

Name	Cardinality and Range	Description	Inheritance
lat_lon	0..1 String	The geographical origin of the sample as defined by latitude and longitude	direct
depth	0..1 QuantityValue	The vertical distance below local surface, e	direct
alt	0..1 QuantityValue	Altitude is a term used to identify heights of objects such as airplanes, spa...	direct
elev	0..1 QuantityValue	Elevation of the sampling site is its height above a fixed reference point, m...	direct
temp	0..1 QuantityValue	Temperature of the sample at the time of sampling	direct
geo_loc_name	0..1 String	The geographical origin of the sample as defined by the country or sea name f...	direct
collection_date	0..1 Date	The time of sampling, either as an instance (single point in time) or interva...	direct
env_broad_scale	0..1 String	Report the major environmental system the sample or specimen came from	direct
env_local_scale	0..1 String	Report the entity or entities which are in the sample or specimen’s local vic...	direct
env_medium	0..1 String	Report the environmental material(s) immediately surrounding the sample or sp...	direct
sample_name	0..1 String	Sample Name is a name that you choose for the sample	direct
host_subject_id	0..1 String	A unique identifier by which each subject can be referred to, de-identified	direct
host_common_name	0..1 String	Common name of the host	direct
host_taxid	0..1 String	NCBI taxon id of the host, e	direct
host_dependence	0..1 String	Type of host dependence for the symbiotic host organism to its host	direct
type_of_symbiosis	0..1 TypeOfSymbiosisEnum	Type of biological interaction established between the symbiotic host organis...	direct
sym_life_cycle_type	0..1 String	Type of life cycle of the symbiotic host species (the thing being sampled)	direct
host_life_stage	0..1 String	Description of life stage of host	direct
host_age	0..1 QuantityValue	Age of host at the time of sampling; relevant scale depends on species and st...	direct
host_sex	0..1 HostSexEnum	Gender or physical sex of the host	direct
mode_transmission	0..1 ModeTransmissionEnum	The process through which the symbiotic host organism entered the host from w...	direct
route_transmission	0..1 RouteTransmissionEnum	Description of path taken by the symbiotic host organism being sampled in ord...	direct
host_body_habitat	0..1 String	Original body habitat where the sample was obtained from	direct
host_body_site	0..1 String	Name of body site where the sample was obtained from, such as a specific orga...	direct
host_body_product	0..1 String	Substance produced by the body, e	direct
host_tot_mass	0..1 QuantityValue	Total mass of the host at collection, the unit depends on host	direct
host_height	0..1 QuantityValue	The height of subject	direct
host_length	0..1 QuantityValue	The length of subject	direct
host_growth_cond	0..1 String	Literature reference giving growth conditions of the host	direct
host_substrate	0..1 String	The growth substrate of the host	direct
host_family_relationship	0..1 String	Relationships to other hosts in the same study; can include multiple relation...	direct
host_infra_specific_name	0..1 String	Taxonomic information about the host below subspecies level	direct
host_infra_specific_rank	0..1 String	Taxonomic rank information about the host below subspecies level, such as var...	direct
host_genotype	0..1 String	Observed genotype	direct
host_phenotype	0..1 String	Phenotype of human or other host	direct
host_dry_mass	0..1 QuantityValue	Measurement of dry mass	direct
host_color	0..1 String	The color of host	direct
host_shape	0..1 String	Morphological shape of host	direct
gravidity	0..1 String	Whether or not subject is gravid, and if yes date due or date post-conception...	direct
host_number	0..1 String	Number of symbiotic host individuals pooled at the time of collection	direct
host_symbiont	0..* String	The taxonomic name of the organism(s) found living in mutualistic, commensali...	direct
host_specificity	0..1 HostSpecificityEnum	Level of specificity of symbiont-host interaction: e	direct
symbiont_host_role	0..1 SymbiontHostRoleEnum	Role of the host in the life cycle of the symbiotic organism	direct
host_cellular_loc	0..1 HostCellularLocEnum	The localization of the symbiotic host organism within the host from which it...	direct
association_duration	0..1 QuantityValue	Time spent in host of the symbiotic organism at the time of sampling; relevan...	direct
host_of_host_coinf	0..1 String	The taxonomic name of any coinfecting organism observed in a symbiotic relati...	direct
host_of_host_name	0..1 String	Common name of the host of the symbiotic host organism	direct
host_of_host_env_loc	0..* String	For a symbiotic host organism the local anatomical environment within its hos...	direct
host_of_host_env_med	0..1 String	Report the environmental material(s) immediately surrounding the symbiotic ho...	direct
host_of_host_taxid	0..1 Integer	NCBI taxon id of the host of the symbiotic host organism	direct
host_of_host_sub_id	0..1 String	A unique identifier by which each host of the symbiotic host organism subject...	direct
host_of_host_disease	0..* String	List of diseases with which the host of the symbiotic host organism has been ...	direct
host_of_host_fam_rel	0..* String	Familial relationship of the host of the symbiotic host organisms to other ho...	direct
host_of_host_infname	0..1 String	Taxonomic name information of the host of the symbiotic host organism below s...	direct
host_of_host_infrank	0..1 String	Taxonomic rank information about the host of the symbiotic host organism belo...	direct
host_of_host_geno	0..1 String	Observed genotype of the host of the symbiotic host organism	direct
host_of_host_pheno	0..1 String	Phenotype of the host of the symbiotic host organism	direct
host_of_host_gravid	0..1 String	Whether or not the host of the symbiotic host organism is gravid, and if yes ...	direct
host_of_host_totmass	0..1 QuantityValue	Total mass of the host of the symbiotic host organism at collection, the unit...	direct
chem_administration	0..* String	List of chemical compounds administered to the host or site where sampling oc...	direct
perturbation	0..* String	Type of perturbation, e	direct
samp_salinity	0..1 QuantityValue	Salinity is the total concentration of all dissolved salts in a liquid or sol...	direct
oxy_stat_samp	0..1 OxyStatSampEnum	Oxygenation status of sample	direct
organism_count	0..* OrganismCountEnum	Total cell count of any organism (or group of organisms) per gram, volume or ...	direct
samp_store_temp	0..1 QuantityValue	Temperature at which sample was stored, e	direct
samp_store_dur	0..1 String	Duration for which the sample was stored	direct
samp_store_loc	0..1 String	Location at which sample was stored, usually name of a specific freezer/room	direct
samp_store_sol	0..1 String	Solution within which sample was stored, if any	direct
misc_param	0..* String	Any other measurement performed or parameter collected, that is not listed he...	direct

Identifier and Mapping Information

Schema Source

from schema: http://w3id.org/mixs

Mappings

Mapping Type	Mapped Value
self	MIXS:Symbiont-associated
native	MIXS:Symbiont-associated

LinkML Source

Direct

name: symbiont-associated
description: symbiont-associated
from_schema: http://w3id.org/mixs
slots:
- lat_lon
- depth
- alt
- elev
- temp
- geo_loc_name
- collection_date
- env_broad_scale
- env_local_scale
- env_medium
- sample_name
- host_subject_id
- host_common_name
- host_taxid
- host_dependence
- type_of_symbiosis
- sym_life_cycle_type
- host_life_stage
- host_age
- host_sex
- mode_transmission
- route_transmission
- host_body_habitat
- host_body_site
- host_body_product
- host_tot_mass
- host_height
- host_length
- host_growth_cond
- host_substrate
- host_family_relationship
- host_infra_specific_name
- host_infra_specific_rank
- host_genotype
- host_phenotype
- host_dry_mass
- host_color
- host_shape
- gravidity
- host_number
- host_symbiont
- host_specificity
- symbiont_host_role
- host_cellular_loc
- association_duration
- host_of_host_coinf
- host_of_host_name
- host_of_host_env_loc
- host_of_host_env_med
- host_of_host_taxid
- host_of_host_sub_id
- host_of_host_disease
- host_of_host_fam_rel
- host_of_host_infname
- host_of_host_infrank
- host_of_host_geno
- host_of_host_pheno
- host_of_host_gravid
- host_of_host_totmass
- chem_administration
- perturbation
- samp_salinity
- oxy_stat_samp
- organism_count
- samp_store_temp
- samp_store_dur
- samp_store_loc
- samp_store_sol
- misc_param
slot_usage:
  sample_name:
    name: sample_name
    domain_of:
    - symbiont-associated
    required: true
  project_name:
    name: project_name
    required: true
  lat_lon:
    name: lat_lon
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    - built environment
    - air
    - agriculture
    required: true
  geo_loc_name:
    name: geo_loc_name
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    - built environment
    - air
    - agriculture
    required: true
  collection_date:
    name: collection_date
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    - built environment
    - air
    - agriculture
    required: true
  env_broad_scale:
    name: env_broad_scale
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    - built environment
    - air
    - agriculture
    required: true
  env_local_scale:
    name: env_local_scale
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    - built environment
    - air
    - agriculture
    required: true
  env_medium:
    name: env_medium
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    - built environment
    - air
    - agriculture
    required: true
  alt:
    name: alt
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - built environment
    - air
    - agriculture
    required: false
  depth:
    name: depth
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - built environment
    - air
    - agriculture
    required: false
  elev:
    name: elev
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - built environment
    - air
    - agriculture
    required: false
  host_subject_id:
    name: host_subject_id
    domain_of:
    - symbiont-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    required: false
  host_common_name:
    name: host_common_name
    domain_of:
    - symbiont-associated
    - plant-associated
    - host-associated
    - agriculture
    required: false
  host_taxid:
    name: host_taxid
    domain_of:
    - symbiont-associated
    - plant-associated
    - host-associated
    - food-farm environment
    - agriculture
    required: false
  source_mat_id:
    name: source_mat_id
    required: false
  host_dependence:
    name: host_dependence
    domain_of:
    - symbiont-associated
    required: true
  type_of_symbiosis:
    name: type_of_symbiosis
    domain_of:
    - symbiont-associated
    required: false
  sym_life_cycle_type:
    name: sym_life_cycle_type
    domain_of:
    - symbiont-associated
    required: true
  host_life_stage:
    name: host_life_stage
    domain_of:
    - symbiont-associated
    - plant-associated
    - host-associated
    - agriculture
    required: true
  host_age:
    name: host_age
    domain_of:
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-farm environment
    - agriculture
    required: false
  host_sex:
    name: host_sex
    domain_of:
    - symbiont-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    required: false
  mode_transmission:
    name: mode_transmission
    domain_of:
    - symbiont-associated
    required: false
  route_transmission:
    name: route_transmission
    domain_of:
    - symbiont-associated
    required: false
  host_body_habitat:
    name: host_body_habitat
    domain_of:
    - symbiont-associated
    - host-associated
    required: false
  host_body_site:
    name: host_body_site
    domain_of:
    - symbiont-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    required: false
  host_body_product:
    name: host_body_product
    domain_of:
    - symbiont-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    required: false
  host_tot_mass:
    name: host_tot_mass
    domain_of:
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-farm environment
    - agriculture
    required: false
  host_height:
    name: host_height
    domain_of:
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-farm environment
    - agriculture
    required: false
  host_length:
    name: host_length
    domain_of:
    - symbiont-associated
    - plant-associated
    - host-associated
    - food-farm environment
    - agriculture
    required: false
  host_growth_cond:
    name: host_growth_cond
    domain_of:
    - symbiont-associated
    - host-associated
    required: false
  host_substrate:
    name: host_substrate
    domain_of:
    - symbiont-associated
    - host-associated
    required: false
  host_family_relationship:
    name: host_family_relationship
    domain_of:
    - symbiont-associated
    required: false
  host_infra_specific_name:
    name: host_infra_specific_name
    domain_of:
    - symbiont-associated
    required: false
  host_infra_specific_rank:
    name: host_infra_specific_rank
    domain_of:
    - symbiont-associated
    required: false
  host_genotype:
    name: host_genotype
    domain_of:
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-farm environment
    - agriculture
    required: false
  host_phenotype:
    name: host_phenotype
    domain_of:
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-farm environment
    - agriculture
    required: false
  host_dry_mass:
    name: host_dry_mass
    domain_of:
    - symbiont-associated
    - plant-associated
    - host-associated
    - food-farm environment
    - agriculture
    required: false
  host_color:
    name: host_color
    domain_of:
    - symbiont-associated
    - host-associated
    required: false
  host_shape:
    name: host_shape
    domain_of:
    - symbiont-associated
    - host-associated
    required: false
  gravidity:
    name: gravidity
    domain_of:
    - symbiont-associated
    - host-associated
    required: false
  host_number:
    name: host_number
    domain_of:
    - symbiont-associated
    required: false
  host_symbiont:
    name: host_symbiont
    domain_of:
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - agriculture
    required: false
  host_specificity:
    name: host_specificity
    domain_of:
    - symbiont-associated
    required: false
  symbiont_host_role:
    name: symbiont_host_role
    domain_of:
    - symbiont-associated
    required: false
  host_cellular_loc:
    name: host_cellular_loc
    domain_of:
    - symbiont-associated
    required: false
  association_duration:
    name: association_duration
    domain_of:
    - symbiont-associated
    required: false
  host_of_host_coinf:
    name: host_of_host_coinf
    domain_of:
    - symbiont-associated
    required: false
  host_of_host_name:
    name: host_of_host_name
    domain_of:
    - symbiont-associated
    required: false
  host_of_host_env_loc:
    name: host_of_host_env_loc
    domain_of:
    - symbiont-associated
    required: false
  host_of_host_env_med:
    name: host_of_host_env_med
    domain_of:
    - symbiont-associated
    required: false
  host_of_host_taxid:
    name: host_of_host_taxid
    domain_of:
    - symbiont-associated
    required: false
  host_of_host_sub_id:
    name: host_of_host_sub_id
    domain_of:
    - symbiont-associated
    required: false
  host_of_host_disease:
    name: host_of_host_disease
    domain_of:
    - symbiont-associated
    required: false
  host_of_host_fam_rel:
    name: host_of_host_fam_rel
    domain_of:
    - symbiont-associated
    required: false
  host_of_host_infname:
    name: host_of_host_infname
    domain_of:
    - symbiont-associated
    required: false
  host_of_host_infrank:
    name: host_of_host_infrank
    domain_of:
    - symbiont-associated
    required: false
  host_of_host_geno:
    name: host_of_host_geno
    domain_of:
    - symbiont-associated
    required: false
  host_of_host_pheno:
    name: host_of_host_pheno
    domain_of:
    - symbiont-associated
    required: false
  host_of_host_gravid:
    name: host_of_host_gravid
    domain_of:
    - symbiont-associated
    required: false
  host_of_host_totmass:
    name: host_of_host_totmass
    domain_of:
    - symbiont-associated
    required: false
  chem_administration:
    name: chem_administration
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-farm environment
    - air
    - agriculture
    required: false
  perturbation:
    name: perturbation
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-farm environment
    - food-animal and animal feed
    - air
    - agriculture
    required: false
  samp_salinity:
    name: samp_salinity
    domain_of:
    - symbiont-associated
    - human-vaginal
    required: false
  oxy_stat_samp:
    name: oxy_stat_samp
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    - agriculture
    required: false
  temp:
    name: temp
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - built environment
    - air
    - agriculture
    required: false
  organism_count:
    name: organism_count
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - built environment
    - air
    - agriculture
    required: false
  samp_vol_we_dna_ext:
    name: samp_vol_we_dna_ext
    required: false
  samp_store_temp:
    name: samp_store_temp
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    required: false
  samp_store_dur:
    name: samp_store_dur
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    - agriculture
    required: false
  samp_store_loc:
    name: samp_store_loc
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    - agriculture
    required: false
  samp_store_sol:
    name: samp_store_sol
    domain_of:
    - symbiont-associated
    required: false
  misc_param:
    name: misc_param
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - air
    - agriculture
    required: false

Induced

name: symbiont-associated
description: symbiont-associated
from_schema: http://w3id.org/mixs
slot_usage:
  sample_name:
    name: sample_name
    domain_of:
    - symbiont-associated
    required: true
  project_name:
    name: project_name
    required: true
  lat_lon:
    name: lat_lon
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    - built environment
    - air
    - agriculture
    required: true
  geo_loc_name:
    name: geo_loc_name
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    - built environment
    - air
    - agriculture
    required: true
  collection_date:
    name: collection_date
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    - built environment
    - air
    - agriculture
    required: true
  env_broad_scale:
    name: env_broad_scale
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    - built environment
    - air
    - agriculture
    required: true
  env_local_scale:
    name: env_local_scale
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    - built environment
    - air
    - agriculture
    required: true
  env_medium:
    name: env_medium
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    - built environment
    - air
    - agriculture
    required: true
  alt:
    name: alt
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - built environment
    - air
    - agriculture
    required: false
  depth:
    name: depth
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - built environment
    - air
    - agriculture
    required: false
  elev:
    name: elev
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - built environment
    - air
    - agriculture
    required: false
  host_subject_id:
    name: host_subject_id
    domain_of:
    - symbiont-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    required: false
  host_common_name:
    name: host_common_name
    domain_of:
    - symbiont-associated
    - plant-associated
    - host-associated
    - agriculture
    required: false
  host_taxid:
    name: host_taxid
    domain_of:
    - symbiont-associated
    - plant-associated
    - host-associated
    - food-farm environment
    - agriculture
    required: false
  source_mat_id:
    name: source_mat_id
    required: false
  host_dependence:
    name: host_dependence
    domain_of:
    - symbiont-associated
    required: true
  type_of_symbiosis:
    name: type_of_symbiosis
    domain_of:
    - symbiont-associated
    required: false
  sym_life_cycle_type:
    name: sym_life_cycle_type
    domain_of:
    - symbiont-associated
    required: true
  host_life_stage:
    name: host_life_stage
    domain_of:
    - symbiont-associated
    - plant-associated
    - host-associated
    - agriculture
    required: true
  host_age:
    name: host_age
    domain_of:
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-farm environment
    - agriculture
    required: false
  host_sex:
    name: host_sex
    domain_of:
    - symbiont-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    required: false
  mode_transmission:
    name: mode_transmission
    domain_of:
    - symbiont-associated
    required: false
  route_transmission:
    name: route_transmission
    domain_of:
    - symbiont-associated
    required: false
  host_body_habitat:
    name: host_body_habitat
    domain_of:
    - symbiont-associated
    - host-associated
    required: false
  host_body_site:
    name: host_body_site
    domain_of:
    - symbiont-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    required: false
  host_body_product:
    name: host_body_product
    domain_of:
    - symbiont-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    required: false
  host_tot_mass:
    name: host_tot_mass
    domain_of:
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-farm environment
    - agriculture
    required: false
  host_height:
    name: host_height
    domain_of:
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-farm environment
    - agriculture
    required: false
  host_length:
    name: host_length
    domain_of:
    - symbiont-associated
    - plant-associated
    - host-associated
    - food-farm environment
    - agriculture
    required: false
  host_growth_cond:
    name: host_growth_cond
    domain_of:
    - symbiont-associated
    - host-associated
    required: false
  host_substrate:
    name: host_substrate
    domain_of:
    - symbiont-associated
    - host-associated
    required: false
  host_family_relationship:
    name: host_family_relationship
    domain_of:
    - symbiont-associated
    required: false
  host_infra_specific_name:
    name: host_infra_specific_name
    domain_of:
    - symbiont-associated
    required: false
  host_infra_specific_rank:
    name: host_infra_specific_rank
    domain_of:
    - symbiont-associated
    required: false
  host_genotype:
    name: host_genotype
    domain_of:
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-farm environment
    - agriculture
    required: false
  host_phenotype:
    name: host_phenotype
    domain_of:
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-farm environment
    - agriculture
    required: false
  host_dry_mass:
    name: host_dry_mass
    domain_of:
    - symbiont-associated
    - plant-associated
    - host-associated
    - food-farm environment
    - agriculture
    required: false
  host_color:
    name: host_color
    domain_of:
    - symbiont-associated
    - host-associated
    required: false
  host_shape:
    name: host_shape
    domain_of:
    - symbiont-associated
    - host-associated
    required: false
  gravidity:
    name: gravidity
    domain_of:
    - symbiont-associated
    - host-associated
    required: false
  host_number:
    name: host_number
    domain_of:
    - symbiont-associated
    required: false
  host_symbiont:
    name: host_symbiont
    domain_of:
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - agriculture
    required: false
  host_specificity:
    name: host_specificity
    domain_of:
    - symbiont-associated
    required: false
  symbiont_host_role:
    name: symbiont_host_role
    domain_of:
    - symbiont-associated
    required: false
  host_cellular_loc:
    name: host_cellular_loc
    domain_of:
    - symbiont-associated
    required: false
  association_duration:
    name: association_duration
    domain_of:
    - symbiont-associated
    required: false
  host_of_host_coinf:
    name: host_of_host_coinf
    domain_of:
    - symbiont-associated
    required: false
  host_of_host_name:
    name: host_of_host_name
    domain_of:
    - symbiont-associated
    required: false
  host_of_host_env_loc:
    name: host_of_host_env_loc
    domain_of:
    - symbiont-associated
    required: false
  host_of_host_env_med:
    name: host_of_host_env_med
    domain_of:
    - symbiont-associated
    required: false
  host_of_host_taxid:
    name: host_of_host_taxid
    domain_of:
    - symbiont-associated
    required: false
  host_of_host_sub_id:
    name: host_of_host_sub_id
    domain_of:
    - symbiont-associated
    required: false
  host_of_host_disease:
    name: host_of_host_disease
    domain_of:
    - symbiont-associated
    required: false
  host_of_host_fam_rel:
    name: host_of_host_fam_rel
    domain_of:
    - symbiont-associated
    required: false
  host_of_host_infname:
    name: host_of_host_infname
    domain_of:
    - symbiont-associated
    required: false
  host_of_host_infrank:
    name: host_of_host_infrank
    domain_of:
    - symbiont-associated
    required: false
  host_of_host_geno:
    name: host_of_host_geno
    domain_of:
    - symbiont-associated
    required: false
  host_of_host_pheno:
    name: host_of_host_pheno
    domain_of:
    - symbiont-associated
    required: false
  host_of_host_gravid:
    name: host_of_host_gravid
    domain_of:
    - symbiont-associated
    required: false
  host_of_host_totmass:
    name: host_of_host_totmass
    domain_of:
    - symbiont-associated
    required: false
  chem_administration:
    name: chem_administration
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-farm environment
    - air
    - agriculture
    required: false
  perturbation:
    name: perturbation
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-farm environment
    - food-animal and animal feed
    - air
    - agriculture
    required: false
  samp_salinity:
    name: samp_salinity
    domain_of:
    - symbiont-associated
    - human-vaginal
    required: false
  oxy_stat_samp:
    name: oxy_stat_samp
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    - agriculture
    required: false
  temp:
    name: temp
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - built environment
    - air
    - agriculture
    required: false
  organism_count:
    name: organism_count
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - built environment
    - air
    - agriculture
    required: false
  samp_vol_we_dna_ext:
    name: samp_vol_we_dna_ext
    required: false
  samp_store_temp:
    name: samp_store_temp
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    required: false
  samp_store_dur:
    name: samp_store_dur
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    - agriculture
    required: false
  samp_store_loc:
    name: samp_store_loc
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    - agriculture
    required: false
  samp_store_sol:
    name: samp_store_sol
    domain_of:
    - symbiont-associated
    required: false
  misc_param:
    name: misc_param
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - air
    - agriculture
    required: false
attributes:
  lat_lon:
    name: lat_lon
    description: The geographical origin of the sample as defined by latitude and
      longitude. The values should be reported in decimal degrees and in WGS84 system
    title: geographic location (latitude and longitude)
    from_schema: http://w3id.org/mixs
    is_a: environment field
    string_serialization: '{float} {float}'
    slot_uri: MIXS:0000009
    multivalued: false
    alias: lat_lon
    owner: symbiont-associated
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    - built environment
    - air
    - agriculture
    range: string
    required: true
  depth:
    name: depth
    description: The vertical distance below local surface, e.g. for sediment or soil
      samples depth is measured from sediment or soil surface, respectively. Depth
      can be reported as an interval for subsurface samples.
    title: depth
    from_schema: http://w3id.org/mixs
    is_a: environment field
    slot_uri: MIXS:0000018
    multivalued: false
    alias: depth
    owner: symbiont-associated
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - built environment
    - air
    - agriculture
    range: quantity value
    required: false
  alt:
    name: alt
    description: Altitude is a term used to identify heights of objects such as airplanes,
      space shuttles, rockets, atmospheric balloons and heights of places such as
      atmospheric layers and clouds. It is used to measure the height of an object
      which is above the earth's surface. In this context, the altitude measurement
      is the vertical distance between the earth's surface above sea level and the
      sampled position in the air
    title: altitude
    from_schema: http://w3id.org/mixs
    is_a: environment field
    slot_uri: MIXS:0000094
    multivalued: false
    alias: alt
    owner: symbiont-associated
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - built environment
    - air
    - agriculture
    range: quantity value
    required: false
  elev:
    name: elev
    description: Elevation of the sampling site is its height above a fixed reference
      point, most commonly the mean sea level. Elevation is mainly used when referring
      to points on the earth's surface, while altitude is used for points above the
      surface, such as an aircraft in flight or a spacecraft in orbit.
    title: elevation
    from_schema: http://w3id.org/mixs
    is_a: environment field
    slot_uri: MIXS:0000093
    multivalued: false
    alias: elev
    owner: symbiont-associated
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - built environment
    - air
    - agriculture
    range: quantity value
    required: false
  temp:
    name: temp
    description: Temperature of the sample at the time of sampling.
    title: temperature
    from_schema: http://w3id.org/mixs
    is_a: environment field
    slot_uri: MIXS:0000113
    multivalued: false
    alias: temp
    owner: symbiont-associated
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - built environment
    - air
    - agriculture
    range: quantity value
    required: false
  geo_loc_name:
    name: geo_loc_name
    description: The geographical origin of the sample as defined by the country or
      sea name followed by specific region name. Country or sea names should be chosen
      from the INSDC country list (http://insdc.org/country.html), or the GAZ ontology
      (http://purl.bioontology.org/ontology/GAZ)
    title: geographic location (country and/or sea,region)
    from_schema: http://w3id.org/mixs
    is_a: environment field
    string_serialization: '{term}: {term}, {text}'
    slot_uri: MIXS:0000010
    multivalued: false
    alias: geo_loc_name
    owner: symbiont-associated
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    - built environment
    - air
    - agriculture
    range: string
    required: true
  collection_date:
    name: collection_date
    description: 'The time of sampling, either as an instance (single point in time)
      or interval. In case no exact time is available, the date/time can be right
      truncated i.e. all of these are valid times: 2008-01-23T19:23:10+00:00; 2008-01-23T19:23:10;
      2008-01-23; 2008-01; 2008; Except: 2008-01; 2008 all are ISO8601 compliant'
    title: collection date
    from_schema: http://w3id.org/mixs
    is_a: environment field
    slot_uri: MIXS:0000011
    multivalued: false
    alias: collection_date
    owner: symbiont-associated
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    - built environment
    - air
    - agriculture
    range: date
    required: true
  env_broad_scale:
    name: env_broad_scale
    description: 'Report the major environmental system the sample or specimen came
      from. The system(s) identified should have a coarse spatial grain, to provide
      the general environmental context of where the sampling was done (e.g. in the
      desert or a rainforest). We recommend using subclasses of EnvO’s biome class:  http://purl.obolibrary.org/obo/ENVO_00000428.
      EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS'
    title: broad-scale environmental context
    from_schema: http://w3id.org/mixs
    is_a: environment field
    string_serialization: '{termLabel} {[termID]}'
    slot_uri: MIXS:0000012
    multivalued: false
    alias: env_broad_scale
    owner: symbiont-associated
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    - built environment
    - air
    - agriculture
    range: string
    required: true
  env_local_scale:
    name: env_local_scale
    description: 'Report the entity or entities which are in the sample or specimen’s
      local vicinity and which you believe have significant causal influences on your
      sample or specimen. We recommend using EnvO terms which are of smaller spatial
      grain than your entry for env_broad_scale. Terms, such as anatomical sites,
      from other OBO Library ontologies which interoperate with EnvO (e.g. UBERON)
      are accepted in this field. EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS.'
    title: local environmental context
    from_schema: http://w3id.org/mixs
    is_a: environment field
    string_serialization: '{termLabel} {[termID]}'
    slot_uri: MIXS:0000013
    multivalued: false
    alias: env_local_scale
    owner: symbiont-associated
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    - built environment
    - air
    - agriculture
    range: string
    required: true
  env_medium:
    name: env_medium
    description: 'Report the environmental material(s) immediately surrounding the
      sample or specimen at the time of sampling. We recommend using subclasses of
      ''environmental material'' (http://purl.obolibrary.org/obo/ENVO_00010483). EnvO
      documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS
      . Terms from other OBO ontologies are permissible as long as they reference
      mass/volume nouns (e.g. air, water, blood) and not discrete, countable entities
      (e.g. a tree, a leaf, a table top).'
    title: environmental medium
    from_schema: http://w3id.org/mixs
    is_a: environment field
    string_serialization: '{termLabel} {[termID]}'
    slot_uri: MIXS:0000014
    multivalued: false
    alias: env_medium
    owner: symbiont-associated
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - core
    - MIGS eukaryote
    - MIGS bacteria
    - MIGS plant
    - MIGS virus
    - MIGS org
    - MIMS
    - MIMARKS specimen
    - MIMARKS survey
    - MISAG
    - MIMAG
    - MIUVIG
    - built environment
    - air
    - agriculture
    range: string
    required: true
  sample_name:
    name: sample_name
    description: Sample Name is a name that you choose for the sample. It can have
      any format, but we suggest that you make it concise, unique and consistent within
      your lab, and as informative as possible. Every Sample Name from a single Submitter
      must be unique.
    title: sample name
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0001107
    multivalued: false
    alias: sample_name
    owner: symbiont-associated
    domain_of:
    - symbiont-associated
    range: string
    required: true
  host_subject_id:
    name: host_subject_id
    description: A unique identifier by which each subject can be referred to, de-identified.
    title: host subject id
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0000861
    multivalued: false
    alias: host_subject_id
    owner: symbiont-associated
    domain_of:
    - symbiont-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    range: string
    required: false
  host_common_name:
    name: host_common_name
    description: Common name of the host.
    title: host common name
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0000248
    multivalued: false
    alias: host_common_name
    owner: symbiont-associated
    domain_of:
    - symbiont-associated
    - plant-associated
    - host-associated
    - agriculture
    range: string
    required: false
  host_taxid:
    name: host_taxid
    description: NCBI taxon id of the host, e.g. 9606
    title: host taxid
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{NCBI taxid}'
    slot_uri: MIXS:0000250
    multivalued: false
    alias: host_taxid
    owner: symbiont-associated
    domain_of:
    - symbiont-associated
    - plant-associated
    - host-associated
    - food-farm environment
    - agriculture
    range: string
    required: false
  host_dependence:
    name: host_dependence
    description: Type of host dependence for the symbiotic host organism to its host.
    title: host dependence
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '[facultative|obligate]'
    slot_uri: MIXS:0001315
    multivalued: false
    alias: host_dependence
    owner: symbiont-associated
    domain_of:
    - symbiont-associated
    range: string
    required: true
  type_of_symbiosis:
    name: type_of_symbiosis
    description: Type of biological interaction established between the symbiotic
      host organism being sampled and its respective host
    title: type of symbiosis
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0001307
    multivalued: false
    alias: type_of_symbiosis
    owner: symbiont-associated
    domain_of:
    - symbiont-associated
    range: type_of_symbiosis_enum
    required: false
  sym_life_cycle_type:
    name: sym_life_cycle_type
    description: Type of life cycle of the symbiotic host species (the thing being
      sampled). Simple life cycles occur within a single host, complex ones within
      multiple different hosts over the course of their normal life cycle.
    title: symbiotic host organism life cycle type
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '[complex life cycle | simple life cycle]'
    slot_uri: MIXS:0001300
    multivalued: false
    alias: sym_life_cycle_type
    owner: symbiont-associated
    domain_of:
    - symbiont-associated
    range: string
    required: true
  host_life_stage:
    name: host_life_stage
    description: Description of life stage of host
    title: host life stage
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0000251
    multivalued: false
    alias: host_life_stage
    owner: symbiont-associated
    domain_of:
    - symbiont-associated
    - plant-associated
    - host-associated
    - agriculture
    range: string
    required: true
  host_age:
    name: host_age
    description: Age of host at the time of sampling; relevant scale depends on species
      and study, e.g. Could be seconds for amoebae or centuries for trees
    title: host age
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000255
    multivalued: false
    alias: host_age
    owner: symbiont-associated
    domain_of:
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-farm environment
    - agriculture
    range: quantity value
    required: false
  host_sex:
    name: host_sex
    description: Gender or physical sex of the host.
    title: host sex
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000811
    multivalued: false
    alias: host_sex
    owner: symbiont-associated
    domain_of:
    - symbiont-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    range: host_sex_enum
    required: false
  mode_transmission:
    name: mode_transmission
    description: The process through which the symbiotic host organism entered the
      host from which it was sampled.
    title: mode of transmission
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0001312
    multivalued: false
    alias: mode_transmission
    owner: symbiont-associated
    domain_of:
    - symbiont-associated
    range: mode_transmission_enum
    required: false
  route_transmission:
    name: route_transmission
    description: Description of path taken by the symbiotic host organism being sampled
      in order to establish a symbiotic relationship with the host (with which it
      was observed at the time of sampling) via a mode of transmission (specified
      in mode_transmission).
    title: route of transmission
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0001316
    multivalued: false
    alias: route_transmission
    owner: symbiont-associated
    domain_of:
    - symbiont-associated
    range: route_transmission_enum
    required: false
  host_body_habitat:
    name: host_body_habitat
    description: Original body habitat where the sample was obtained from
    title: host body habitat
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0000866
    multivalued: false
    alias: host_body_habitat
    owner: symbiont-associated
    domain_of:
    - symbiont-associated
    - host-associated
    range: string
    required: false
  host_body_site:
    name: host_body_site
    description: Name of body site where the sample was obtained from, such as a specific
      organ or tissue (tongue, lung etc...). For foundational model of anatomy ontology
      (fma) (v 4.11.0) or Uber-anatomy ontology (UBERON) (v releases/2014-06-15) terms,
      please see http://purl.bioontology.org/ontology/FMA or http://purl.bioontology.org/ontology/UBERON
    title: host body site
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{termLabel} {[termID]}'
    slot_uri: MIXS:0000867
    multivalued: false
    alias: host_body_site
    owner: symbiont-associated
    domain_of:
    - symbiont-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    range: string
    required: false
  host_body_product:
    name: host_body_product
    description: Substance produced by the body, e.g. Stool, mucus, where the sample
      was obtained from. For foundational model of anatomy ontology (fma) or Uber-anatomy
      ontology (UBERON) terms, please see https://www.ebi.ac.uk/ols/ontologies/fma
      or https://www.ebi.ac.uk/ols/ontologies/uberon
    title: host body product
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{termLabel} {[termID]}'
    slot_uri: MIXS:0000888
    multivalued: false
    alias: host_body_product
    owner: symbiont-associated
    domain_of:
    - symbiont-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    range: string
    required: false
  host_tot_mass:
    name: host_tot_mass
    description: Total mass of the host at collection, the unit depends on host
    title: host total mass
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000263
    multivalued: false
    alias: host_tot_mass
    owner: symbiont-associated
    domain_of:
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-farm environment
    - agriculture
    range: quantity value
    required: false
  host_height:
    name: host_height
    description: The height of subject
    title: host height
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000264
    multivalued: false
    alias: host_height
    owner: symbiont-associated
    domain_of:
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-farm environment
    - agriculture
    range: quantity value
    required: false
  host_length:
    name: host_length
    description: The length of subject
    title: host length
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000256
    multivalued: false
    alias: host_length
    owner: symbiont-associated
    domain_of:
    - symbiont-associated
    - plant-associated
    - host-associated
    - food-farm environment
    - agriculture
    range: quantity value
    required: false
  host_growth_cond:
    name: host_growth_cond
    description: Literature reference giving growth conditions of the host
    title: host growth conditions
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{PMID}|{DOI}|{URL}|{text}'
    slot_uri: MIXS:0000871
    multivalued: false
    alias: host_growth_cond
    owner: symbiont-associated
    domain_of:
    - symbiont-associated
    - host-associated
    range: string
    required: false
  host_substrate:
    name: host_substrate
    description: The growth substrate of the host.
    title: host substrate
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0000252
    multivalued: false
    alias: host_substrate
    owner: symbiont-associated
    domain_of:
    - symbiont-associated
    - host-associated
    range: string
    required: false
  host_family_relationship:
    name: host_family_relationship
    description: Relationships to other hosts in the same study; can include multiple
      relationships.
    title: host family relationship
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{text}'
    slot_uri: MIXS:0000872
    multivalued: false
    alias: host_family_relationship
    owner: symbiont-associated
    domain_of:
    - symbiont-associated
    range: string
    required: false
  host_infra_specific_name:
    name: host_infra_specific_name
    description: Taxonomic information about the host below subspecies level.
    title: host infra-specific name
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0000253
    multivalued: false
    alias: host_infra_specific_name
    owner: symbiont-associated
    domain_of:
    - symbiont-associated
    range: string
    required: false
  host_infra_specific_rank:
    name: host_infra_specific_rank
    description: Taxonomic rank information about the host below subspecies level,
      such as variety, form, rank etc.
    title: host infra-specific rank
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0000254
    multivalued: false
    alias: host_infra_specific_rank
    owner: symbiont-associated
    domain_of:
    - symbiont-associated
    range: string
    required: false
  host_genotype:
    name: host_genotype
    description: Observed genotype
    title: host genotype
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0000365
    multivalued: false
    alias: host_genotype
    owner: symbiont-associated
    domain_of:
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-farm environment
    - agriculture
    range: string
    required: false
  host_phenotype:
    name: host_phenotype
    description: Phenotype of human or other host. For phenotypic quality ontology
      (pato) (v 2018-03-27) terms, please see http://purl.bioontology.org/ontology/pato.
      For Human Phenotype Ontology (HP) (v 2018-06-13) please see http://purl.bioontology.org/ontology/HP
    title: host phenotype
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{termLabel} {[termID]}'
    slot_uri: MIXS:0000874
    multivalued: false
    alias: host_phenotype
    owner: symbiont-associated
    domain_of:
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-farm environment
    - agriculture
    range: string
    required: false
  host_dry_mass:
    name: host_dry_mass
    description: Measurement of dry mass
    title: host dry mass
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000257
    multivalued: false
    alias: host_dry_mass
    owner: symbiont-associated
    domain_of:
    - symbiont-associated
    - plant-associated
    - host-associated
    - food-farm environment
    - agriculture
    range: quantity value
    required: false
  host_color:
    name: host_color
    description: The color of host
    title: host color
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0000260
    multivalued: false
    alias: host_color
    owner: symbiont-associated
    domain_of:
    - symbiont-associated
    - host-associated
    range: string
    required: false
  host_shape:
    name: host_shape
    description: Morphological shape of host
    title: host shape
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0000261
    multivalued: false
    alias: host_shape
    owner: symbiont-associated
    domain_of:
    - symbiont-associated
    - host-associated
    range: string
    required: false
  gravidity:
    name: gravidity
    description: Whether or not subject is gravid, and if yes date due or date post-conception,
      specifying which is used
    title: gravidity
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{boolean};{timestamp}'
    slot_uri: MIXS:0000875
    multivalued: false
    alias: gravidity
    owner: symbiont-associated
    domain_of:
    - symbiont-associated
    - host-associated
    range: string
    required: false
  host_number:
    name: host_number
    description: Number of symbiotic host individuals pooled at the time of collection.
    title: host number individual
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{float} m'
    slot_uri: MIXS:0001305
    multivalued: false
    alias: host_number
    owner: symbiont-associated
    domain_of:
    - symbiont-associated
    range: string
    required: false
  host_symbiont:
    name: host_symbiont
    description: The taxonomic name of the organism(s) found living in mutualistic,
      commensalistic, or parasitic symbiosis with the specific host.
    title: observed host symbionts
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0001298
    multivalued: true
    alias: host_symbiont
    owner: symbiont-associated
    domain_of:
    - symbiont-associated
    - plant-associated
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - agriculture
    range: string
    required: false
  host_specificity:
    name: host_specificity
    description: 'Level of specificity of symbiont-host interaction: e.g. generalist
      (symbiont able to establish associations with distantly related hosts) or species-specific.'
    title: host specificity
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0001308
    multivalued: false
    alias: host_specificity
    owner: symbiont-associated
    domain_of:
    - symbiont-associated
    range: host_specificity_enum
    required: false
  symbiont_host_role:
    name: symbiont_host_role
    description: Role of the host in the life cycle of the symbiotic organism.
    title: host of the symbiont role
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0001303
    multivalued: false
    alias: symbiont_host_role
    owner: symbiont-associated
    domain_of:
    - symbiont-associated
    range: symbiont_host_role_enum
    required: false
  host_cellular_loc:
    name: host_cellular_loc
    description: 'The localization of the symbiotic host organism within the host
      from which it was sampled: e.g. intracellular if the symbiotic host organism
      is localized within the cells or extracellular if the symbiotic host organism
      is localized outside of cells.'
    title: host cellular location
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0001313
    multivalued: false
    alias: host_cellular_loc
    owner: symbiont-associated
    domain_of:
    - symbiont-associated
    range: host_cellular_loc_enum
    required: false
  association_duration:
    name: association_duration
    description: Time spent in host of the symbiotic organism at the time of sampling;
      relevant scale depends on symbiotic organism and study.
    title: duration of association with the host
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0001299
    multivalued: false
    alias: association_duration
    owner: symbiont-associated
    domain_of:
    - symbiont-associated
    range: quantity value
    required: false
  host_of_host_coinf:
    name: host_of_host_coinf
    description: The taxonomic name of any coinfecting organism observed in a symbiotic
      relationship with the host of the sampled host organism. e.g. where a sample
      collected from a host trematode species (A) which was collected from a host_of_host
      fish (B) that was also infected with a nematode (C), the value here would be
      (C) the nematode {species name} or {common name}. Multiple co-infecting species
      may be added in a comma-separated list. For listing symbiotic organisms associated
      with the host (A) use the term Observed host symbiont.
    title: observed coinfecting organisms in host of host
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0001310
    multivalued: false
    alias: host_of_host_coinf
    owner: symbiont-associated
    domain_of:
    - symbiont-associated
    range: string
    required: false
  host_of_host_name:
    name: host_of_host_name
    description: Common name of the host of the symbiotic host organism.
    title: host of the symbiotic host common name
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0001324
    multivalued: false
    alias: host_of_host_name
    owner: symbiont-associated
    domain_of:
    - symbiont-associated
    range: string
    required: false
  host_of_host_env_loc:
    name: host_of_host_env_loc
    description: For a symbiotic host organism the local anatomical environment within
      its host may have causal influences. Report the anatomical entity(s) which are
      in the direct environment of the symbiotic host organism being sampled and which
      you believe have significant causal influences on your sample or specimen. For
      example, if the symbiotic host organism being sampled is an intestinal worm,
      its local environmental context will be the term for intestine from UBERON (http://uberon.github.io/).
    title: host of the symbiotic host local environmental context
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{termLabel} {[termID]}'
    slot_uri: MIXS:0001325
    multivalued: true
    alias: host_of_host_env_loc
    owner: symbiont-associated
    domain_of:
    - symbiont-associated
    range: string
    required: false
  host_of_host_env_med:
    name: host_of_host_env_med
    description: 'Report the environmental material(s) immediately surrounding the
      symbiotic host organism at the time of sampling. This usually will be a tissue
      or substance type from the host, but may be another material if the symbiont
      is external to the host. We recommend using classes from the UBERON ontology,
      but subclasses of ''environmental material'' (http://purl.obolibrary.org/obo/ENVO_00010483)
      may also be used. EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS
      . Terms from other OBO ontologies are permissible as long as they reference
      mass/volume nouns (e.g. air, water, blood) and not discrete, countable entities
      (e.g. intestines, heart).MIxS . Terms from other OBO ontologies are permissible
      as long as they reference mass/volume nouns (e.g. air, water, blood) and not
      discrete, countable entities (e.g. intestines, heart).'
    title: host of the symbiotic host environemental medium
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{termLabel} {[termID]}'
    slot_uri: MIXS:0001326
    multivalued: false
    alias: host_of_host_env_med
    owner: symbiont-associated
    domain_of:
    - symbiont-associated
    range: string
    required: false
  host_of_host_taxid:
    name: host_of_host_taxid
    description: NCBI taxon id of the host of the symbiotic host organism.
    title: host of the symbiotic host taxon id
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0001306
    multivalued: false
    alias: host_of_host_taxid
    owner: symbiont-associated
    domain_of:
    - symbiont-associated
    range: integer
    required: false
  host_of_host_sub_id:
    name: host_of_host_sub_id
    description: 'A unique identifier by which each host of the symbiotic host organism
      subject can be referred to, de-identified, e.g. #H14.'
    title: host of the symbiotic host subject id
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0001327
    multivalued: false
    alias: host_of_host_sub_id
    owner: symbiont-associated
    domain_of:
    - symbiont-associated
    range: string
    required: false
  host_of_host_disease:
    name: host_of_host_disease
    description: List of diseases with which the host of the symbiotic host organism
      has been diagnosed; can include multiple diagnoses. The value of the field depends
      on host; for humans the terms should be chosen from the DO (Human Disease Ontology)
      at https://www.disease-ontology.org, non-human host diseases are free text.
    title: host of the symbiotic host disease status
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{termLabel} {[termID]}|{text}'
    slot_uri: MIXS:0001319
    multivalued: true
    alias: host_of_host_disease
    owner: symbiont-associated
    domain_of:
    - symbiont-associated
    range: string
    required: false
  host_of_host_fam_rel:
    name: host_of_host_fam_rel
    description: Familial relationship of the host of the symbiotic host organisms
      to other hosts of symbiotic host organism in the same study; can include multiple
      relationships.
    title: host of the symbiotic host family relationship
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{text}'
    slot_uri: MIXS:0001328
    multivalued: true
    alias: host_of_host_fam_rel
    owner: symbiont-associated
    domain_of:
    - symbiont-associated
    range: string
    required: false
  host_of_host_infname:
    name: host_of_host_infname
    description: Taxonomic name information of the host of the symbiotic host organism
      below subspecies level.
    title: host of the symbiotic host infra-specific name
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0001329
    multivalued: false
    alias: host_of_host_infname
    owner: symbiont-associated
    domain_of:
    - symbiont-associated
    range: string
    required: false
  host_of_host_infrank:
    name: host_of_host_infrank
    description: Taxonomic rank information about the host of the symbiotic host organism
      below subspecies level, such as variety, form, rank etc.
    title: host of the symbiotic host infra-specific rank
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0001330
    multivalued: false
    alias: host_of_host_infrank
    owner: symbiont-associated
    domain_of:
    - symbiont-associated
    range: string
    required: false
  host_of_host_geno:
    name: host_of_host_geno
    description: Observed genotype of the host of the symbiotic host organism.
    title: host of the symbiotic host genotype
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0001331
    multivalued: false
    alias: host_of_host_geno
    owner: symbiont-associated
    domain_of:
    - symbiont-associated
    range: string
    required: false
  host_of_host_pheno:
    name: host_of_host_pheno
    description: Phenotype of the host of the symbiotic host organism. For phenotypic
      quality ontology (PATO) terms, see http://purl.bioontology.org/ontology/pato.
    title: host of the symbiotic host phenotype
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{term}'
    slot_uri: MIXS:0001332
    multivalued: false
    alias: host_of_host_pheno
    owner: symbiont-associated
    domain_of:
    - symbiont-associated
    range: string
    required: false
  host_of_host_gravid:
    name: host_of_host_gravid
    description: Whether or not the host of the symbiotic host organism is gravid,
      and if yes date due or date post-conception, specifying which is used.
    title: host of the symbiotic host gravidity
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{boolean};{timestamp}'
    slot_uri: MIXS:0001333
    multivalued: false
    alias: host_of_host_gravid
    owner: symbiont-associated
    domain_of:
    - symbiont-associated
    range: string
    required: false
  host_of_host_totmass:
    name: host_of_host_totmass
    description: Total mass of the host of the symbiotic host organism at collection,
      the unit depends on the host.
    title: host of the symbiotic host total mass
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0001334
    multivalued: false
    alias: host_of_host_totmass
    owner: symbiont-associated
    domain_of:
    - symbiont-associated
    range: quantity value
    required: false
  chem_administration:
    name: chem_administration
    description: List of chemical compounds administered to the host or site where
      sampling occurred, and when (e.g. Antibiotics, n fertilizer, air filter); can
      include multiple compounds. For chemical entities of biological interest ontology
      (chebi) (v 163), http://purl.bioontology.org/ontology/chebi
    title: chemical administration
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{termLabel} {[termID]};{timestamp}'
    slot_uri: MIXS:0000751
    multivalued: true
    alias: chem_administration
    owner: symbiont-associated
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-farm environment
    - air
    - agriculture
    range: string
    required: false
  perturbation:
    name: perturbation
    description: Type of perturbation, e.g. chemical administration, physical disturbance,
      etc., coupled with perturbation regimen including how many times the perturbation
      was repeated, how long each perturbation lasted, and the start and end time
      of the entire perturbation period; can include multiple perturbation types
    title: perturbation
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{Rn/start_time/end_time/duration}'
    slot_uri: MIXS:0000754
    multivalued: true
    alias: perturbation
    owner: symbiont-associated
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-farm environment
    - food-animal and animal feed
    - air
    - agriculture
    range: string
    required: false
  samp_salinity:
    name: samp_salinity
    description: Salinity is the total concentration of all dissolved salts in a liquid
      or solid (in the form of an extract obtained by centrifugation) sample. While
      salinity can be measured by a complete chemical analysis, this method is difficult
      and time consuming. More often, it is instead derived from the conductivity
      measurement. This is known as practical salinity. These derivations compare
      the specific conductance of the sample to a salinity standard such as seawater
    title: sample salinity
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000109
    multivalued: false
    alias: samp_salinity
    owner: symbiont-associated
    domain_of:
    - symbiont-associated
    - human-vaginal
    range: quantity value
    required: false
  oxy_stat_samp:
    name: oxy_stat_samp
    description: Oxygenation status of sample
    title: oxygenation status of sample
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000753
    multivalued: false
    alias: oxy_stat_samp
    owner: symbiont-associated
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    - agriculture
    range: oxy_stat_samp_enum
    required: false
  organism_count:
    name: organism_count
    description: 'Total cell count of any organism (or group of organisms) per gram,
      volume or area of sample, should include name of organism followed by count.
      The method that was used for the enumeration (e.g. qPCR, atp, mpn, etc.) Should
      also be provided. (example: total prokaryotes; 3.5e7 cells per ml; qpcr)'
    title: organism count
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000103
    multivalued: true
    alias: organism_count
    owner: symbiont-associated
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - built environment
    - air
    - agriculture
    range: organism_count_enum
    required: false
  samp_store_temp:
    name: samp_store_temp
    description: Temperature at which sample was stored, e.g. -80 degree Celsius
    title: sample storage temperature
    from_schema: http://w3id.org/mixs
    is_a: core field
    slot_uri: MIXS:0000110
    multivalued: false
    alias: samp_store_temp
    owner: symbiont-associated
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    range: quantity value
    required: false
  samp_store_dur:
    name: samp_store_dur
    description: Duration for which the sample was stored
    title: sample storage duration
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{duration}'
    slot_uri: MIXS:0000116
    multivalued: false
    alias: samp_store_dur
    owner: symbiont-associated
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    - agriculture
    range: string
    required: false
  samp_store_loc:
    name: samp_store_loc
    description: Location at which sample was stored, usually name of a specific freezer/room
    title: sample storage location
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0000755
    multivalued: false
    alias: samp_store_loc
    owner: symbiont-associated
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - air
    - agriculture
    range: string
    required: false
  samp_store_sol:
    name: samp_store_sol
    description: Solution within which sample was stored, if any.
    title: sample storage solution
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text}'
    slot_uri: MIXS:0001317
    multivalued: false
    alias: samp_store_sol
    owner: symbiont-associated
    domain_of:
    - symbiont-associated
    range: string
    required: false
  misc_param:
    name: misc_param
    description: Any other measurement performed or parameter collected, that is not
      listed here
    title: miscellaneous parameter
    from_schema: http://w3id.org/mixs
    is_a: core field
    string_serialization: '{text};{float} {unit}'
    slot_uri: MIXS:0000752
    multivalued: true
    alias: misc_param
    owner: symbiont-associated
    domain_of:
    - water
    - wastewater_sludge
    - symbiont-associated
    - soil
    - sediment
    - plant-associated
    - miscellaneous natural or artificial environment
    - microbial mat_biofilm
    - hydrocarbon resources-fluids_swabs
    - hydrocarbon resources-cores
    - human-vaginal
    - human-skin
    - human-oral
    - human-gut
    - human-associated
    - host-associated
    - food-human foods
    - food-food production facility
    - food-farm environment
    - food-animal and animal feed
    - air
    - agriculture
    range: string
    required: false