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Slot: contam_score

The contamination score is based on the fraction of single-copy genes that are observed more than once in a query genome. The following scores are acceptable for; High Quality Draft: < 5%, Medium Quality Draft: < 10%, Low Quality Draft: < 10%. Contamination must be below 5% for a SAG or MAG to be deposited into any of the public databases

URI: MIXS:0000072

Inheritance

Properties

Aliases

  • contamination score

Examples

Value
1%

Identifier and Mapping Information

Annotations

property value
expected_value value

Schema Source

  • from schema: http://w3id.org/mixs

LinkML Source

name: contam_score
annotations:
  expected_value:
    tag: expected_value
    value: value
description: 'The contamination score is based on the fraction of single-copy genes
  that are observed more than once in a query genome. The following scores are acceptable
  for; High Quality Draft: < 5%, Medium Quality Draft: < 10%, Low Quality Draft: <
  10%. Contamination must be below 5% for a SAG or MAG to be deposited into any of
  the public databases'
title: contamination score
examples:
- value: 1%
from_schema: http://w3id.org/mixs
aliases:
- contamination score
is_a: sequencing field
string_serialization: '{float} percentage'
slot_uri: MIXS:0000072
multivalued: false
alias: contam_score
domain_of:
- core
- MISAG
- MIMAG
range: string