Slot: contam_screen_param

Specific parameters used in the decontamination sofware, such as reference database, coverage, and kmers. Combinations of these parameters may also be used, i.e. kmer and coverage, or reference database and kmer

URI: MIXS:0000073

Inheritance

• sequencing_field
  • contam_screen_param

Properties

• Range: String

Aliases

• contamination screening parameters

Examples

Value
kmer

Identifier and Mapping Information

Annotations

property	value
expected_value	enumeration;value or name

Schema Source

• from schema: http://w3id.org/mixs

LinkML Source

name: contam_screen_param
annotations:
  expected_value:
    tag: expected_value
    value: enumeration;value or name
description: Specific parameters used in the decontamination sofware, such as reference
  database, coverage, and kmers. Combinations of these parameters may also be used,
  i.e. kmer and coverage, or reference database and kmer
title: contamination screening parameters
examples:
- value: kmer
from_schema: http://w3id.org/mixs
aliases:
- contamination screening parameters
is_a: sequencing field
slot_uri: MIXS:0000073
multivalued: false
alias: contam_screen_param
domain_of:
- core
- MISAG
- MIMAG
range: string
pattern: ^(ref db|kmer|coverage|combination);.+