Slot: env_broad_scale

Report the major environmental system the sample or specimen came from. The system(s) identified should have a coarse spatial grain, to provide the general environmental context of where the sampling was done (e.g. in the desert or a rainforest). We recommend using subclasses of EnvO’s biome class: http://purl.obolibrary.org/obo/ENVO_00000428. EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS

URI: MIXS:0000012

Inheritance

environment_field
- env_broad_scale

Properties

Range: String

Aliases

broad-scale environmental context

Examples

Value
oceanic epipelagic zone biome [ENVO:01000033] for annotating a water sample from the photic zone in middle of the Atlantic Ocean

Identifier and Mapping Information

Annotations

property	value
expected_value	The major environment type(s) where the sample was collected. Recommend subclasses of biome [ENVO:00000428]. Multiple terms can be separated by one or more pipes.

Schema Source

from schema: http://w3id.org/mixs

LinkML Source

name: env_broad_scale
annotations:
  expected_value:
    tag: expected_value
    value: The major environment type(s) where the sample was collected. Recommend
      subclasses of biome [ENVO:00000428]. Multiple terms can be separated by one
      or more pipes.
description: 'Report the major environmental system the sample or specimen came from.
  The system(s) identified should have a coarse spatial grain, to provide the general
  environmental context of where the sampling was done (e.g. in the desert or a rainforest).
  We recommend using subclasses of EnvO’s biome class:  http://purl.obolibrary.org/obo/ENVO_00000428.
  EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS'
title: broad-scale environmental context
examples:
- value: oceanic epipelagic zone biome [ENVO:01000033] for annotating a water sample
    from the photic zone in middle of the Atlantic Ocean
from_schema: http://w3id.org/mixs
aliases:
- broad-scale environmental context
is_a: environment field
string_serialization: '{termLabel} {[termID]}'
slot_uri: MIXS:0000012
multivalued: false
alias: env_broad_scale
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- soil
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MIMARKS specimen
- MIMARKS survey
- MISAG
- MIMAG
- MIUVIG
- built environment
- air
- agriculture
range: string