Slot: env_local_scale

Report the entity or entities which are in the sample or specimen’s local vicinity and which you believe have significant causal influences on your sample or specimen. We recommend using EnvO terms which are of smaller spatial grain than your entry for env_broad_scale. Terms, such as anatomical sites, from other OBO Library ontologies which interoperate with EnvO (e.g. UBERON) are accepted in this field. EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS.

URI: MIXS:0000013

Inheritance

• environment_field
  • env_local_scale

Properties

• Range: String

Aliases

• local environmental context

Examples

Value
litter layer [ENVO:01000338]; Annotating a pooled sample taken from various vegetation layers in a forest consider: canopy [ENVO:00000047]

Identifier and Mapping Information

Annotations

property	value
expected_value	Environmental entities having causal influences upon the entity at time of sampling.

Schema Source

• from schema: http://w3id.org/mixs

LinkML Source

name: env_local_scale
annotations:
  expected_value:
    tag: expected_value
    value: Environmental entities having causal influences upon the entity at time
      of sampling.
description: 'Report the entity or entities which are in the sample or specimen’s
  local vicinity and which you believe have significant causal influences on your
  sample or specimen. We recommend using EnvO terms which are of smaller spatial grain
  than your entry for env_broad_scale. Terms, such as anatomical sites, from other
  OBO Library ontologies which interoperate with EnvO (e.g. UBERON) are accepted in
  this field. EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS.'
title: local environmental context
examples:
- value: 'litter layer [ENVO:01000338]; Annotating a pooled sample taken from various
    vegetation layers in a forest consider: canopy [ENVO:00000047]|herb and fern layer
    [ENVO:01000337]|litter layer [ENVO:01000338]|understory [01000335]|shrub layer
    [ENVO:01000336].'
from_schema: http://w3id.org/mixs
aliases:
- local environmental context
is_a: environment field
string_serialization: '{termLabel} {[termID]}'
slot_uri: MIXS:0000013
multivalued: false
alias: env_local_scale
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- soil
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MIMARKS specimen
- MIMARKS survey
- MISAG
- MIMAG
- MIUVIG
- built environment
- air
- agriculture
range: string