Slot: env_medium

Report the environmental material(s) immediately surrounding the sample or specimen at the time of sampling. We recommend using subclasses of 'environmental material' (http://purl.obolibrary.org/obo/ENVO_00010483). EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS . Terms from other OBO ontologies are permissible as long as they reference mass/volume nouns (e.g. air, water, blood) and not discrete, countable entities (e.g. a tree, a leaf, a table top).

URI: MIXS:0000014

Inheritance

environment_field
- env_medium

Properties

Range: String

Aliases

environmental medium

Examples

Value
soil [ENVO:00001998]; Annotating a fish swimming in the upper 100 m of the Atlantic Ocean, consider: ocean water [ENVO:00002151]. Example: Annotating a duck on a pond consider: pond water [ENVO:00002228]

Identifier and Mapping Information

Annotations

property	value
expected_value	The material displaced by the entity at time of sampling. Recommend subclasses of environmental material [ENVO:00010483].

Schema Source

from schema: http://w3id.org/mixs

LinkML Source

name: env_medium
annotations:
  expected_value:
    tag: expected_value
    value: The material displaced by the entity at time of sampling. Recommend subclasses
      of environmental material [ENVO:00010483].
description: 'Report the environmental material(s) immediately surrounding the sample
  or specimen at the time of sampling. We recommend using subclasses of ''environmental
  material'' (http://purl.obolibrary.org/obo/ENVO_00010483). EnvO documentation about
  how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS
  . Terms from other OBO ontologies are permissible as long as they reference mass/volume
  nouns (e.g. air, water, blood) and not discrete, countable entities (e.g. a tree,
  a leaf, a table top).'
title: environmental medium
examples:
- value: 'soil [ENVO:00001998]; Annotating a fish swimming in the upper 100 m of the
    Atlantic Ocean, consider: ocean water [ENVO:00002151]. Example: Annotating a duck
    on a pond consider: pond water [ENVO:00002228]|air [ENVO_00002005]'
from_schema: http://w3id.org/mixs
aliases:
- environmental medium
is_a: environment field
string_serialization: '{termLabel} {[termID]}'
slot_uri: MIXS:0000014
multivalued: false
alias: env_medium
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- soil
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MIMARKS specimen
- MIMARKS survey
- MISAG
- MIMAG
- MIUVIG
- built environment
- air
- agriculture
range: string