Slot: org_count_qpcr_info

If qpcr was used for the cell count, the target gene name, the primer sequence and the cycling conditions should also be provided. (Example: 16S rrna; FWD:ACGTAGCTATGACGT REV:GTGCTAGTCGAGTAC; initial denaturation:90C_5min; denaturation:90C_2min; annealing:52C_30 sec; elongation:72C_30 sec; 90 C for 1 min; final elongation:72C_5min; 30 cycles)

URI: MIXS:0000099

Inheritance

• core_field
  • org_count_qpcr_info

Properties

• Range: String

Aliases

• organism count qPCR information

Examples

Value

Identifier and Mapping Information

Annotations

property	value
expected_value	gene name;FWD:forward primer sequence;REV:reverse primer sequence;initial denaturation:degrees_minutes;denaturation:degrees_minutes;annealing:degrees_minutes;elongation:degrees_minutes;final elongation:degrees_minutes; total cycles

Schema Source

• from schema: http://w3id.org/mixs

LinkML Source

name: org_count_qpcr_info
annotations:
  expected_value:
    tag: expected_value
    value: gene name;FWD:forward primer sequence;REV:reverse primer sequence;initial
      denaturation:degrees_minutes;denaturation:degrees_minutes;annealing:degrees_minutes;elongation:degrees_minutes;final
      elongation:degrees_minutes; total cycles
  preferred_unit:
    tag: preferred_unit
    value: number of cells per gram (or ml or cm^2)
  occurrence:
    tag: occurrence
    value: '1'
description: 'If qpcr was used for the cell count, the target gene name, the primer
  sequence and the cycling conditions should also be provided. (Example: 16S rrna;
  FWD:ACGTAGCTATGACGT REV:GTGCTAGTCGAGTAC; initial denaturation:90C_5min; denaturation:90C_2min;
  annealing:52C_30 sec; elongation:72C_30 sec; 90 C for 1 min; final elongation:72C_5min;
  30 cycles)'
title: organism count qPCR information
examples:
- value: ''
from_schema: http://w3id.org/mixs
aliases:
- organism count qPCR information
is_a: core field
string_serialization: '{text};FWD:{dna};REV:{dna};initial denaturation:degrees_minutes;denaturation:degrees_minutes;annealing:degrees_minutes;elongation:degrees_minutes;final
  elongation:degrees_minutes; total cycles'
slot_uri: MIXS:0000099
multivalued: false
alias: org_count_qpcr_info
domain_of:
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
range: string