Slot: organism_count

Total cell count of any organism (or group of organisms) per gram, volume or area of sample, should include name of organism followed by count. The method that was used for the enumeration (e.g. qPCR, atp, mpn, etc.) Should also be provided. (example: total prokaryotes; 3.5e7 cells per ml; qpcr)

URI: MIXS:0000103

Inheritance

• core_field
  • organism_count

Properties

• Range: OrganismCountEnum
• Multivalued: True

Aliases

• organism count

Examples

Value
total prokaryotes;3.5e7 cells per milliliter;qPCR

Identifier and Mapping Information

Annotations

property	value
expected_value	organism name;measurement value;enumeration

Schema Source

• from schema: http://w3id.org/mixs

LinkML Source

name: organism_count
annotations:
  expected_value:
    tag: expected_value
    value: organism name;measurement value;enumeration
  preferred_unit:
    tag: preferred_unit
    value: number of cells per cubic meter, number of cells per milliliter, number
      of cells per cubic centimeter
  occurrence:
    tag: occurrence
    value: m
description: 'Total cell count of any organism (or group of organisms) per gram, volume
  or area of sample, should include name of organism followed by count. The method
  that was used for the enumeration (e.g. qPCR, atp, mpn, etc.) Should also be provided.
  (example: total prokaryotes; 3.5e7 cells per ml; qpcr)'
title: organism count
examples:
- value: total prokaryotes;3.5e7 cells per milliliter;qPCR
from_schema: http://w3id.org/mixs
aliases:
- organism count
is_a: core field
slot_uri: MIXS:0000103
multivalued: true
alias: organism_count
domain_of:
- water
- wastewater_sludge
- symbiont-associated
- sediment
- plant-associated
- miscellaneous natural or artificial environment
- microbial mat_biofilm
- hydrocarbon resources-fluids_swabs
- hydrocarbon resources-cores
- human-vaginal
- human-skin
- human-oral
- human-gut
- human-associated
- host-associated
- food-human foods
- food-food production facility
- food-farm environment
- food-animal and animal feed
- built environment
- air
- agriculture
range: organism_count_enum