Slot: otu_class_appr
Cutoffs and approach used when clustering “species-level” OTUs. Note that results from standard 95% ANI / 85% AF clustering should be provided alongside OTUS defined from another set of thresholds, even if the latter are the ones primarily used during the analysis
URI: MIXS:0000085
Inheritance
- sequencing_field
- otu_class_appr
Properties
- Range: String
Aliases
- OTU classification approach
Examples
| Value |
|---|
| 95% ANI;85% AF; greedy incremental clustering |
Identifier and Mapping Information
Annotations
| property | value |
|---|---|
| expected_value | cutoffs and method used |
Schema Source
- from schema: http://w3id.org/mixs
LinkML Source
name: otu_class_appr
annotations:
expected_value:
tag: expected_value
value: cutoffs and method used
description: Cutoffs and approach used when clustering “species-level” OTUs. Note
that results from standard 95% ANI / 85% AF clustering should be provided alongside
OTUS defined from another set of thresholds, even if the latter are the ones primarily
used during the analysis
title: OTU classification approach
examples:
- value: 95% ANI;85% AF; greedy incremental clustering
from_schema: http://w3id.org/mixs
aliases:
- OTU classification approach
is_a: sequencing field
string_serialization: '{ANI cutoff};{AF cutoff};{clustering method}'
slot_uri: MIXS:0000085
multivalued: false
alias: otu_class_appr
domain_of:
- core
- MIUVIG
range: string