Slot: sim_search_meth

Tool used to compare ORFs with database, along with version and cutoffs used

URI: MIXS:0000063

Inheritance

• sequencing_field
  • sim_search_meth

Properties

• Range: String

Aliases

• similarity search method

Examples

Value
HMMER3;3.1b2;hmmsearch, cutoff of 50 on score

Identifier and Mapping Information

Annotations

property	value
expected_value	names and versions of software(s), parameters used

Schema Source

• from schema: http://w3id.org/mixs

LinkML Source

name: sim_search_meth
annotations:
  expected_value:
    tag: expected_value
    value: names and versions of software(s), parameters used
description: Tool used to compare ORFs with database, along with version and cutoffs
  used
title: similarity search method
examples:
- value: HMMER3;3.1b2;hmmsearch, cutoff of 50 on score
from_schema: http://w3id.org/mixs
aliases:
- similarity search method
is_a: sequencing field
string_serialization: '{software};{version};{parameters}'
slot_uri: MIXS:0000063
multivalued: false
alias: sim_search_meth
domain_of:
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MISAG
- MIMAG
- MIUVIG
range: string