Slot: tax_class

Method used for taxonomic classification, along with reference database used, classification rank, and thresholds used to classify new genomes

URI: MIXS:0000064

Inheritance

• sequencing_field
  • tax_class

Properties

• Range: String

Aliases

• taxonomic classification

Examples

Value
vConTACT vContact2 (references from NCBI RefSeq v83, genus rank classification, default parameters)

Identifier and Mapping Information

Annotations

property	value
expected_value	classification method, database name, and other parameters

Schema Source

• from schema: http://w3id.org/mixs

LinkML Source

name: tax_class
annotations:
  expected_value:
    tag: expected_value
    value: classification method, database name, and other parameters
description: Method used for taxonomic classification, along with reference database
  used, classification rank, and thresholds used to classify new genomes
title: taxonomic classification
examples:
- value: vConTACT vContact2 (references from NCBI RefSeq v83, genus rank classification,
    default parameters)
from_schema: http://w3id.org/mixs
aliases:
- taxonomic classification
is_a: sequencing field
string_serialization: '{text}'
slot_uri: MIXS:0000064
multivalued: false
alias: tax_class
domain_of:
- core
- MIGS eukaryote
- MIGS bacteria
- MIGS plant
- MIGS virus
- MIGS org
- MIMS
- MISAG
- MIMAG
- MIUVIG
range: string