Class: MetaboliteQuantification

This is used to link a metabolomics analysis workflow to a specific metabolite

classDiagram class MetaboliteQuantification click MetaboliteQuantification href "../MetaboliteQuantification" MetaboliteQuantification : alternative_identifiers MetaboliteQuantification : highest_similarity_score MetaboliteQuantification : metabolite_quantified MetaboliteQuantification --> "1" ChemicalEntity : metabolite_quantified click ChemicalEntity href "../ChemicalEntity"

Slots

Name	Cardinality and Range	Description	Inheritance
alternative_identifiers	0..* Uriorcurie	A list of alternative identifiers for the entity	direct
highest_similarity_score	0..1 Float		direct
metabolite_quantified	0..1 ChemicalEntity	the specific metabolite identifier	direct

Usages

used by	used in	type	used
MetaboliteQuantification	metabolite_quantified	domain	MetaboliteQuantification
MetabolomicsAnalysisActivity	has_metabolite_quantifications	range	MetaboliteQuantification

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/nmdc/nmdc

Mappings

Mapping Type	Mapped Value
self	nmdc:MetaboliteQuantification
native	nmdc:MetaboliteQuantification

LinkML Source

Direct

name: MetaboliteQuantification
description: This is used to link a metabolomics analysis workflow to a specific metabolite
from_schema: https://w3id.org/nmdc/nmdc
slots:
- alternative_identifiers
- highest_similarity_score
- metabolite_quantified

Induced

name: MetaboliteQuantification
description: This is used to link a metabolomics analysis workflow to a specific metabolite
from_schema: https://w3id.org/nmdc/nmdc
attributes:
  alternative_identifiers:
    name: alternative_identifiers
    description: A list of alternative identifiers for the entity.
    from_schema: https://w3id.org/nmdc/nmdc
    rank: 1000
    multivalued: true
    alias: alternative_identifiers
    owner: MetaboliteQuantification
    domain_of:
    - Biosample
    - Study
    - NamedThing
    - MetaboliteQuantification
    range: uriorcurie
    pattern: ^[a-zA-Z0-9][a-zA-Z0-9_\.]+:[a-zA-Z0-9_][a-zA-Z0-9_\-\/\.,]*$
  highest_similarity_score:
    name: highest_similarity_score
    todos:
    - Yuri to fill in description
    from_schema: https://w3id.org/nmdc/nmdc
    rank: 1000
    alias: highest_similarity_score
    owner: MetaboliteQuantification
    domain_of:
    - MetaboliteQuantification
    range: float
  metabolite_quantified:
    name: metabolite_quantified
    description: the specific metabolite identifier
    from_schema: https://w3id.org/nmdc/nmdc
    rank: 1000
    domain: MetaboliteQuantification
    alias: metabolite_quantified
    owner: MetaboliteQuantification
    domain_of:
    - MetaboliteQuantification
    range: ChemicalEntity