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Slot: alternative_identifiers

A list of alternative identifiers for the entity.

URI: nmdc:alternative_identifiers

Inheritance

Applicable Classes

Name Description Modifies Slot
Pooling physical combination of several instances of like material no
Biosample Biological source material which can be characterized by an experiment yes
OrthologyGroup A set of genes or gene products in which all members are orthologous no
FunctionalAnnotationTerm Abstract grouping class for any term/descriptor that can be applied to a func... no
MetagenomeAssembly A workflow execution activity that converts sequencing reads into an assemble... no
FieldResearchSite A site, outside of a laboratory, from which biosamples may be collected no
MagsAnalysis A workflow execution activity that uses computational binning tools to group ... no
FiltrationProcess The process of segregation of phases; e no
ChemicalEntity An atom or molecule that can be represented with a chemical formula no
MetatranscriptomeAssembly no
MetaboliteIdentification This is used to link a metabolomics analysis workflow to a specific metabolit... no
Site no
SubSamplingProcess Separating a sample aliquot from the starting material for downstream activit... no
DataGeneration The methods and processes used to generate omics data from a biosample or org... no
Configuration A set of parameters that define the actions of a process and is shared among ... no
MetagenomeAnnotation A workflow execution activity that provides functional and structural annotat... no
MetatranscriptomeExpressionAnalysis A workflow process that provides expression values and read counts for gene f... no
ReadBasedTaxonomyAnalysis A workflow execution activity that performs taxonomy classification using seq... no
Sample A sample is a material entity that can be characterized by an experiment no
DissolvingProcess A mixing step where a soluble component is mixed with a liquid component no
ProtocolExecution A PlannedProces that has PlannedProcess parts no
LibraryPreparation no
ChromatographyConfiguration A set of parameters that define and control the actions of a chromatography p... no
MixingProcess The combining of components, particles or layers into a more homogeneous stat... no
Instrument A material entity that is designed to perform a function in a scientific inve... no
Study A study summarizes the overall goal of a research initiative and outlines the... yes
EnvironmentalMaterialTerm no
ChromatographicSeparationProcess The process of using a selective partitioning of the analyte or interferent b... no
Extraction A material separation in which a desired component of an input material is se... no
DataEmitterProcess A process that generates data objects as output no
MassSpectrometryConfiguration A set of parameters that define and control the actions of a mass spectrometr... no
CollectingBiosamplesFromSite no
Pathway A pathway is a sequence of steps/reactions carried out by an organism or comm... no
PlannedProcess no
DataObject An object that primarily consists of symbols that represent information no
MetabolomicsAnalysis no
Manifest A qualified collection of DataObjects that can be analyzed together in the sa... no
ReadQcAnalysis A workflow execution activity that performs quality control on raw Illumina r... no
MaterialEntity no
StorageProcess A planned process with the objective to preserve and protect material entitie... no
MaterialProcessing A process that takes one or more samples as inputs and generates one or more ... no
OntologyClass A representation of class defined in an external ontology no
GeneProduct A molecule encoded by a gene that has an evolved function no
MetatranscriptomeAnnotation no
NucleotideSequencing A DataGeneration in which the sequence of DNA or RNA molecules is generated no
AnnotatingWorkflow A WorkflowExecution whose output indicates the potential functions of genes o... no
MassSpectrometry Spectrometry where the sample is converted into gaseous ions which are charac... no
MetaproteomicsAnalysis no
ChemicalConversionProcess A process that results in the interconversion of chemical species by a reacti... no
CalibrationInformation A calibration object that is associated with a process no
WorkflowExecution Represents an instance of an execution of a particular workflow no
MetagenomeSequencing Initial sequencing activity that precedes any analysis no
ProcessedSample no
NomAnalysis no
InformationObject Any data or knowledge that reduces uncertainty or enhances understanding abou... no
NamedThing a databased entity or concept/class no

Properties

  • Range: Uriorcurie

  • Multivalued: True

  • Regex pattern: ^[a-zA-Z0-9][a-zA-Z0-9_\.]+:[a-zA-Z0-9_][a-zA-Z0-9_\-\/\.,\(\)\=\#]*$

Identifier and Mapping Information

Schema Source

Mappings

Mapping Type Mapped Value

LinkML Source

name: alternative_identifiers
description: A list of alternative identifiers for the entity.
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
alias: alternative_identifiers
domain_of:
- MetaboliteIdentification
- NamedThing
range: uriorcurie
multivalued: true
pattern: ^[a-zA-Z0-9][a-zA-Z0-9_\.]+:[a-zA-Z0-9_][a-zA-Z0-9_\-\/\.,\(\)\=\#]*$