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Slot: alternative_identifiers

A list of alternative identifiers for the entity.

URI: nmdc:alternative_identifiers

Inheritance

Applicable Classes

Name Description Modifies Slot
ProtocolExecution A PlannedProces that has PlannedProcess parts no
PlannedProcess no
OrthologyGroup A set of genes or gene products in which all members are orthologous no
DataEmitterProcess A process that generates data objects as output no
Sample A sample is a material entity that can be characterized by an experiment no
MetaproteomicsAnalysis no
MassSpectrometryConfiguration A set of parameters that define and control the actions of a mass spectrometr... no
OntologyClass A representation of class defined in an external ontology no
SubSamplingProcess Separating a sample aliquot from the starting material for downstream activit... no
GeneProduct A molecule encoded by a gene that has an evolved function no
MaterialProcessing A process that takes one or more samples as inputs and generates one or more ... no
FunctionalAnnotationTerm Abstract grouping class for any term/descriptor that can be applied to a func... no
MagsAnalysis A workflow execution activity that uses computational binning tools to group ... no
EnvironmentalMaterialTerm no
MetatranscriptomeExpressionAnalysis A workflow process that provides expression values and read counts for gene f... no
NomAnalysis no
DissolvingProcess A mixing step where a soluble component is mixed with a liquid component no
MetaboliteIdentification This is used to link a metabolomics analysis workflow to a specific metabolit... no
Site no
MetatranscriptomeAnnotation no
MetabolomicsAnalysis no
NamedThing a databased entity or concept/class no
InformationObject Any data or knowledge that reduces uncertainty or enhances understanding abou... no
NucleotideSequencing A DataGeneration in which the sequence of DNA or RNA molecules is generated no
Manifest A qualified collection of DataObjects that can be analyzed together in the sa... no
MaterialEntity no
Study A study summarizes the overall goal of a research initiative and outlines the... yes
FieldResearchSite A site, outside of a laboratory, from which biosamples may be collected no
MixingProcess The combining of components, particles or layers into a more homogeneous stat... no
ChemicalConversionProcess A process that results in the interconversion of chemical species by a reacti... no
LibraryPreparation no
Instrument A material entity that is designed to perform a function in a scientific inve... no
MassSpectrometry Spectrometry where the sample is converted into gaseous ions which are charac... no
CalibrationInformation A calibration object that is associated with a process no
AnnotatingWorkflow A WorkflowExecution whose output indicates the potential functions of genes o... no
Extraction A material separation in which a desired component of an input material is se... no
MetagenomeAnnotation A workflow execution activity that provides functional and structural annotat... no
MetatranscriptomeAssembly no
MetagenomeAssembly A workflow execution activity that converts sequencing reads into an assemble... no
Pathway A pathway is a sequence of steps/reactions carried out by an organism or comm... no
WorkflowExecution Represents an instance of an execution of a particular workflow no
ReadQcAnalysis A workflow execution activity that performs quality control on raw Illumina r... no
ReadBasedTaxonomyAnalysis A workflow execution activity that performs taxonomy classification using seq... no
Biosample Biological source material which can be characterized by an experiment yes
Configuration A set of parameters that define the actions of a process and is shared among ... no
CollectingBiosamplesFromSite no
ChromatographicSeparationProcess The process of using a selective partitioning of the analyte or interferent b... no
ProcessedSample no
DataObject An object that primarily consists of symbols that represent information no
DataGeneration The methods and processes used to generate omics data from a biosample or org... no
StorageProcess A planned process with the objective to preserve and protect material entitie... no
FiltrationProcess The process of segregation of phases; e no
ChemicalEntity An atom or molecule that can be represented with a chemical formula no
ChromatographyConfiguration A set of parameters that define and control the actions of a chromatography p... no
Pooling physical combination of several instances of like material no
MetagenomeSequencing Initial sequencing activity that precedes any analysis no

Properties

  • Range: Uriorcurie

  • Multivalued: True

  • Regex pattern: ^[a-zA-Z0-9][a-zA-Z0-9_\.]+:[a-zA-Z0-9_][a-zA-Z0-9_\-\/\.,\(\)\=\#]*$

Identifier and Mapping Information

Schema Source

Mappings

Mapping Type Mapped Value

LinkML Source

name: alternative_identifiers
description: A list of alternative identifiers for the entity.
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
alias: alternative_identifiers
domain_of:
- MetaboliteIdentification
- NamedThing
range: uriorcurie
multivalued: true
pattern: ^[a-zA-Z0-9][a-zA-Z0-9_\.]+:[a-zA-Z0-9_][a-zA-Z0-9_\-\/\.,\(\)\=\#]*$