Skip to content

Slot: alternative_identifiers

A list of alternative identifiers for the entity.

URI: nmdc:alternative_identifiers

Inheritance

Applicable Classes

Name Description Modifies Slot
PlannedProcess no
Instrument A material entity that is designed to perform a function in a scientific inve... no
MaterialProcessing A process that takes one or more samples as inputs and generates one or more ... no
MetagenomeSequencing Initial sequencing activity that precedes any analysis no
MetaboliteIdentification This is used to link a metabolomics analysis workflow to a specific metabolit... no
DissolvingProcess A mixing step where a soluble component is mixed with a liquid component no
Manifest A qualified collection of DataObjects that can be analyzed together in the sa... no
ChemicalEntity An atom or molecule that can be represented with a chemical formula no
MetatranscriptomeExpressionAnalysis A workflow process that provides expression values and read counts for gene f... no
ChemicalConversionProcess A process that results in the interconversion of chemical species by a reacti... no
CalibrationInformation A calibration object that is associated with a process no
FiltrationProcess The process of segregation of phases; e no
GeneProduct A molecule encoded by a gene that has an evolved function no
OrthologyGroup A set of genes or gene products in which all members are orthologous no
Study A study summarizes the overall goal of a research initiative and outlines the... yes
NucleotideSequencing A DataGeneration in which the sequence of DNA or RNA molecules is generated no
Biosample Biological source material which can be characterized by an experiment yes
NamedThing a databased entity or concept/class no
LibraryPreparation no
WorkflowExecution Represents an instance of an execution of a particular workflow no
Site no
Configuration A set of parameters that define the actions of a process and is shared among ... no
Extraction A material separation in which a desired component of an input material is se... no
SubSamplingProcess Separating a sample aliquot from the starting material for downstream activit... no
MetagenomeAssembly A workflow execution activity that converts sequencing reads into an assemble... no
MetaproteomicsAnalysis no
FunctionalAnnotationTerm Abstract grouping class for any term/descriptor that can be applied to a func... no
EnvironmentalMaterialTerm no
DataObject An object that primarily consists of symbols that represent information no
ReadBasedTaxonomyAnalysis A workflow execution activity that performs taxonomy classification using seq... no
ProcessedSample no
ProtocolExecution A PlannedProces that has PlannedProcess parts no
NomAnalysis no
MetatranscriptomeAssembly no
ChromatographicSeparationProcess The process of using a selective partitioning of the analyte or interferent b... no
MagsAnalysis A workflow execution activity that uses computational binning tools to group ... no
MetabolomicsAnalysis no
MetagenomeAnnotation A workflow execution activity that provides functional and structural annotat... no
OntologyClass no
ChromatographyConfiguration A set of parameters that define and control the actions of a chromatography p... no
InformationObject Any data or knowledge that reduces uncertainty or enhances understanding abou... no
StorageProcess A planned process with the objective to preserve and protect material entitie... no
DataGeneration The methods and processes used to generate omics data from a biosample or org... no
MassSpectrometryConfiguration A set of parameters that define and control the actions of a mass spectrometr... no
Pooling physical combination of several instances of like material no
CollectingBiosamplesFromSite no
ReadQcAnalysis A workflow execution activity that performs quality control on raw Illumina r... no
MaterialEntity no
Pathway A pathway is a sequence of steps/reactions carried out by an organism or comm... no
FieldResearchSite A site, outside of a laboratory, from which biosamples may be collected no
MassSpectrometry Spectrometry where the sample is converted into gaseous ions which are charac... no
MixingProcess The combining of components, particles or layers into a more homogeneous stat... no
MetatranscriptomeAnnotation no

Properties

  • Range: Uriorcurie

  • Multivalued: True

  • Regex pattern: ^[a-zA-Z0-9][a-zA-Z0-9_\.]+:[a-zA-Z0-9_][a-zA-Z0-9_\-\/\.,]*$

Identifier and Mapping Information

Schema Source

LinkML Source

name: alternative_identifiers
description: A list of alternative identifiers for the entity.
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
alias: alternative_identifiers
domain_of:
- MetaboliteIdentification
- NamedThing
range: uriorcurie
multivalued: true
pattern: ^[a-zA-Z0-9][a-zA-Z0-9_\.]+:[a-zA-Z0-9_][a-zA-Z0-9_\-\/\.,]*$