Slot: alternative_identifiers

A list of alternative identifiers for the entity.

Inheritance

alternative_identifiers
- external_database_identifiers

Applicable Classes

Name	Description	Modifies Slot
SubSamplingProcess	Separating a sample aliquot from the starting material for downstream activit...	no
FunctionalAnnotationTerm	Abstract grouping class for any term/descriptor that can be applied to a func...	no
ChemicalConversionProcess	A process that results in the interconversion of chemical species by a reacti...	no
DataGeneration	The methods and processes used to generate omics data from a biosample or org...	no
InformationObject	Any data or knowledge that reduces uncertainty or enhances understanding abou...	no
FieldResearchSite	A site, outside of a laboratory, from which biosamples may be collected	no
DataObject	An object that primarily consists of symbols that represent information	no
Instrument	A material entity that is designed to perform a function in a scientific inve...	no
MixingProcess	The combining of components, particles or layers into a more homogeneous stat...	no
WorkflowExecution	Represents an instance of an execution of a particular workflow	no
DataEmitterProcess	A process that generates data objects as output	no
MetagenomeSequencing	Initial sequencing activity that precedes any analysis	no
CalibrationInformation	A calibration object that is associated with a process	no
MetagenomeAnnotation	A workflow execution activity that provides functional and structural annotat...	no
MetabolomicsAnalysis		no
OntologyClass	A representation of class defined in an external ontology	no
MagsAnalysis	A workflow execution activity that uses computational binning tools to group ...	no
NamedThing	a databased entity or concept/class	no
ChromatographicSeparationProcess	The process of using a selective partitioning of the analyte or interferent b...	no
Site		no
CollectingBiosamplesFromSite		no
ProtocolExecution	A PlannedProces that has PlannedProcess parts	no
AnnotatingWorkflow	A WorkflowExecution whose output indicates the potential functions of genes o...	no
Biosample	Biological source material which can be characterized by an experiment	yes
ChemicalEntity	An atom or molecule that can be represented with a chemical formula	no
DissolvingProcess	A mixing step where a soluble component is mixed with a liquid component	no
ProcessedSample		no
MetatranscriptomeAssembly		no
Pooling	physical combination of several instances of like material	no
ReadBasedTaxonomyAnalysis	A workflow execution activity that performs taxonomy classification using seq...	no
Sample	A sample is a material entity that can be characterized by an experiment	no
Manifest	A qualified collection of DataObjects that can be analyzed together in the sa...	no
EnvironmentalMaterialTerm		no
GeneProduct	A molecule encoded by a gene that has an evolved function	no
MassSpectrometryConfiguration	A set of parameters that define and control the actions of a mass spectrometr...	no
MetaboliteIdentification	This is used to link a metabolomics analysis workflow to a specific metabolit...	no
MetaproteomicsAnalysis		no
NucleotideSequencing	A DataGeneration in which the sequence of DNA or RNA molecules is generated	no
MetatranscriptomeExpressionAnalysis	A workflow process that provides expression values and read counts for gene f...	no
NomAnalysis		no
MetatranscriptomeAnnotation		no
Pathway	A pathway is a sequence of steps/reactions carried out by an organism or comm...	no
Configuration	A set of parameters that define the actions of a process and is shared among ...	no
OrthologyGroup	A set of genes or gene products in which all members are orthologous	no
PlannedProcess		no
Study	A study summarizes the overall goal of a research initiative and outlines the...	yes
ReadQcAnalysis	A workflow execution activity that performs quality control on raw Illumina r...	no
ChromatographyConfiguration	A set of parameters that define and control the actions of a chromatography p...	no
MaterialProcessing	A process that takes one or more samples as inputs and generates one or more ...	no
LibraryPreparation		no
MaterialEntity		no
MassSpectrometry	Spectrometry where the sample is converted into gaseous ions which are charac...	no
FiltrationProcess	The process of segregation of phases; e	no
Extraction	A material separation in which a desired component of an input material is se...	no
StorageProcess	A planned process with the objective to preserve and protect material entitie...	no
MetagenomeAssembly	A workflow execution activity that converts sequencing reads into an assemble...	no

Properties

Range: Uriorcurie
Multivalued: True
Regex pattern: ^[a-zA-Z0-9][a-zA-Z0-9_\.]+:[a-zA-Z0-9_][a-zA-Z0-9_\-\/\.,\=\#]*$

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/nmdc/nmdc

Mappings

Mapping Type	Mapped Value

LinkML Source

name: alternative_identifiers
description: A list of alternative identifiers for the entity.
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
alias: alternative_identifiers
domain_of:
- MetaboliteIdentification
- NamedThing
range: uriorcurie
multivalued: true
pattern: ^[a-zA-Z0-9][a-zA-Z0-9_\.]+:[a-zA-Z0-9_][a-zA-Z0-9_\-\/\.,\(\)\=\#]*$