Slot: ctg_l50
Given a set of contigs, the L50 is defined as the sequence length of the shortest contig at 50% of the total genome length.
URI: nmdc:ctg_l50
Inheritance
- metagenome_assembly_parameter
- ctg_l50
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| MetagenomeAssembly | A workflow execution activity that converts sequencing reads into an assemble... | no |
| MetatranscriptomeAssembly | no |
Properties
- Range: Float
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/nmdc/nmdc
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | nmdc:ctg_l50 |
| native | nmdc:ctg_l50 |
LinkML Source
name: ctg_l50
description: Given a set of contigs, the L50 is defined as the sequence length of
the shortest contig at 50% of the total genome length.
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
is_a: metagenome_assembly_parameter
alias: ctg_l50
domain_of:
- MetagenomeAssembly
- MetatranscriptomeAssembly
range: float