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Slot: DNA plate position (dna_cont_well)

URI: nmdc:dna_cont_well

Applicable Classes

Name Description Modifies Slot
Biosample Biological source material which can be characterized by an experiment no

Properties

  • Range: String

  • Recommended: True

  • Regex pattern: ^(?!A1$|A12$|H1$|H12$)(([A-H][1-9])|([A-H]1[0-2]))$

Examples

Value
B2

Comments

  • Required when 'plate' is selected for container type.
  • Leave blank if the sample will be shipped in a tube.
  • JGI will not process samples in corner wells, so A1, A12, H1 and H12 will not pass validation.
  • For partial plates, fill by columns, like B1-G1,A2-H2,A3-D3 (NOT A2-A11,B1-B8).

Identifier and Mapping Information

Schema Source

Mappings

Mapping Type Mapped Value
self nmdc:dna_cont_well
native nmdc:dna_cont_well

LinkML Source

name: dna_cont_well
title: DNA plate position
comments:
- Required when 'plate' is selected for container type.
- Leave blank if the sample will be shipped in a tube.
- JGI will not process samples in corner wells, so A1, A12, H1 and H12 will not pass
  validation.
- For partial plates, fill by columns, like B1-G1,A2-H2,A3-D3 (NOT A2-A11,B1-B8).
examples:
- value: B2
from_schema: https://w3id.org/nmdc/nmdc
rank: 11
string_serialization: '{96 well plate pos}'
alias: dna_cont_well
domain_of:
- Biosample
slot_group: JGI-Metagenomics
range: string
recommended: true
pattern: ^(?!A1$|A12$|H1$|H12$)(([A-H][1-9])|([A-H]1[0-2]))$