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Slot: host subspecific genetic lineage (host_subspecf_genlin)

Information about the genetic distinctness of the host organism below the subspecies level e.g., serovar, serotype, biotype, ecotype, variety, cultivar, or any relevant genetic typing schemes like Group I plasmid. Subspecies should not be recorded in this term, but in the NCBI taxonomy. Supply both the lineage name and the lineage rank separated by a colon, e.g., biovar:abc123.

URI: MIXS:0001318

Inheritance

Applicable Classes

Name Description Modifies Slot
Biosample Biological source material which can be characterized by an experiment no

Properties

  • Range: String

  • Multivalued: True

Aliases

  • host subspecific genetic lineage

Examples

Value
serovar:Newport, variety:glabrum, cultivar: Red Delicious

Identifier and Mapping Information

Annotations

property value
expected_value Genetic lineage below lowest rank of NCBI taxonomy, which is subspecies, e.g. serovar, biotype, ecotype, variety, cultivar.

Schema Source

LinkML Source

name: host_subspecf_genlin
annotations:
  expected_value:
    tag: expected_value
    value: Genetic lineage below lowest rank of NCBI taxonomy, which is subspecies,
      e.g. serovar, biotype, ecotype, variety, cultivar.
  occurrence:
    tag: occurrence
    value: m
description: Information about the genetic distinctness of the host organism below
  the subspecies level e.g., serovar, serotype, biotype, ecotype, variety, cultivar,
  or any relevant genetic typing schemes like Group I plasmid. Subspecies should not
  be recorded in this term, but in the NCBI taxonomy. Supply both the lineage name
  and the lineage rank separated by a colon, e.g., biovar:abc123.
title: host subspecific genetic lineage
examples:
- value: 'serovar:Newport, variety:glabrum, cultivar: Red Delicious'
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- host subspecific genetic lineage
rank: 1000
is_a: core field
string_serialization: '{rank name}:{text}'
slot_uri: MIXS:0001318
alias: host_subspecf_genlin
domain_of:
- Biosample
range: string
multivalued: true