Slot: host subspecific genetic lineage (host_subspecf_genlin)
Information about the genetic distinctness of the host organism below the subspecies level e.g., serovar, serotype, biotype, ecotype, variety, cultivar, or any relevant genetic typing schemes like Group I plasmid. Subspecies should not be recorded in this term, but in the NCBI taxonomy. Supply both the lineage name and the lineage rank separated by a colon, e.g., biovar:abc123.
URI: MIXS:0001318
Inheritance
- core_field
- host_subspecf_genlin
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| Biosample | Biological source material which can be characterized by an experiment | no |
Properties
-
Range: String
-
Multivalued: True
Aliases
- host subspecific genetic lineage
Examples
| Value |
|---|
| serovar:Newport, variety:glabrum, cultivar: Red Delicious |
Identifier and Mapping Information
Annotations
| property | value |
|---|---|
| expected_value | Genetic lineage below lowest rank of NCBI taxonomy, which is subspecies, e.g. serovar, biotype, ecotype, variety, cultivar. |
Schema Source
- from schema: https://w3id.org/nmdc/nmdc
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | MIXS:0001318 |
| native | nmdc:host_subspecf_genlin |
LinkML Source
name: host_subspecf_genlin
annotations:
expected_value:
tag: expected_value
value: Genetic lineage below lowest rank of NCBI taxonomy, which is subspecies,
e.g. serovar, biotype, ecotype, variety, cultivar.
occurrence:
tag: occurrence
value: m
description: Information about the genetic distinctness of the host organism below
the subspecies level e.g., serovar, serotype, biotype, ecotype, variety, cultivar,
or any relevant genetic typing schemes like Group I plasmid. Subspecies should not
be recorded in this term, but in the NCBI taxonomy. Supply both the lineage name
and the lineage rank separated by a colon, e.g., biovar:abc123.
title: host subspecific genetic lineage
examples:
- value: 'serovar:Newport, variety:glabrum, cultivar: Red Delicious'
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- host subspecific genetic lineage
rank: 1000
is_a: core field
string_serialization: '{rank name}:{text}'
slot_uri: MIXS:0001318
alias: host_subspecf_genlin
domain_of:
- Biosample
range: string
multivalued: true