Slot: id

A unique identifier for a thing. Must be either a CURIE shorthand for a URI or a complete URI

Applicable Classes

Name	Description	Modifies Slot
MetagenomeAnnotation	A workflow execution activity that provides functional and structural annotat...	yes
Site		no
NucleotideSequencing	A DataGeneration in which the sequence of DNA or RNA molecules is generated	yes
Extraction	A material separation in which a desired component of an input material is se...	yes
SubSamplingProcess	Separating a sample aliquot from the starting material for downstream activit...	yes
FiltrationProcess	The process of segregation of phases; e	yes
InformationObject	Any data or knowledge that reduces uncertainty or enhances understanding abou...	no
ReadBasedTaxonomyAnalysis	A workflow execution activity that performs taxonomy classification using seq...	yes
DataObject	An object that primarily consists of symbols that represent information	yes
MassSpectrometry	Spectrometry where the sample is converted into gaseous ions which are charac...	yes
StorageProcess	A planned process with the objective to preserve and protect material entitie...	yes
OrthologyGroup	A set of genes or gene products in which all members are orthologous	no
Study	A study summarizes the overall goal of a research initiative and outlines the...	yes
OntologyClass	A representation of class defined in an external ontology	yes
Manifest	A qualified collection of DataObjects that can be analyzed together in the sa...	yes
GeneProduct	A molecule encoded by a gene that has an evolved function	no
ChromatographicSeparationProcess	The process of using a selective partitioning of the analyte or interferent b...	yes
DissolvingProcess	A mixing step where a soluble component is mixed with a liquid component	yes
EnvironmentalMaterialTerm		no
NamedThing	a databased entity or concept/class	no
MaterialProcessing	A process that takes one or more samples as inputs and generates one or more ...	no
Configuration	A set of parameters that define the actions of a process and is shared among ...	no
ChromatographyConfiguration	A set of parameters that define and control the actions of a chromatography p...	yes
MassSpectrometryConfiguration	A set of parameters that define and control the actions of a mass spectrometr...	yes
CollectingBiosamplesFromSite		yes
ChemicalConversionProcess	A process that results in the interconversion of chemical species by a reacti...	yes
PlannedProcess		no
MetabolomicsAnalysis		yes
WorkflowExecution	Represents an instance of an execution of a particular workflow	no
Instrument	A material entity that is designed to perform a function in a scientific inve...	yes
MetatranscriptomeAnnotation		yes
NomAnalysis		yes
MetaproteomicsAnalysis		yes
ProcessedSample		yes
FieldResearchSite	A site, outside of a laboratory, from which biosamples may be collected	yes
LibraryPreparation		yes
ChemicalEntity	An atom or molecule that can be represented with a chemical formula	no
MaterialEntity		no
FunctionalAnnotationTerm	Abstract grouping class for any term/descriptor that can be applied to a func...	no
MetatranscriptomeAssembly		yes
MagsAnalysis	A workflow execution activity that uses computational binning tools to group ...	yes
Pooling	physical combination of several instances of like material	yes
DataGeneration	The methods and processes used to generate omics data from a biosample or org...	no
MetagenomeAssembly	A workflow execution activity that converts sequencing reads into an assemble...	yes
MixingProcess	The combining of components, particles or layers into a more homogeneous stat...	yes
ProtocolExecution	A PlannedProces that has PlannedProcess parts	yes
CalibrationInformation	A calibration object that is associated with a process	yes
Biosample	Biological source material which can be characterized by an experiment	yes
Sample	A sample is a material entity that can be characterized by an experiment	no
Pathway	A pathway is a sequence of steps/reactions carried out by an organism or comm...	no
ReadQcAnalysis	A workflow execution activity that performs quality control on raw Illumina r...	yes
MetatranscriptomeExpressionAnalysis	A workflow process that provides expression values and read counts for gene f...	yes
MetagenomeSequencing	Initial sequencing activity that precedes any analysis	yes

Properties

Range: Uriorcurie
Required: True
Regex pattern: ^[a-zA-Z0-9][a-zA-Z0-9_\.]+:[a-zA-Z0-9_][a-zA-Z0-9_\-\/\.,]*$

Examples

Value
nmdc:mgmag-00-x012.1_7_c1

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/nmdc/nmdc

Mappings

Mapping Type	Mapped Value

LinkML Source

name: id
description: A unique identifier for a thing. Must be either a CURIE shorthand for
  a URI or a complete URI
notes:
- 'abstracted pattern: prefix:typecode-authshoulder-blade(.version)?(_seqsuffix)?'
- a minimum length of 3 characters is suggested for typecodes, but 1 or 2 characters
  will be accepted
- typecodes must correspond 1:1 to a class in the NMDC schema. this will be checked
  via per-class id slot usage assertions
- minting authority shoulders should probably be enumerated and checked in the pattern
examples:
- value: nmdc:mgmag-00-x012.1_7_c1
  description: https://github.com/microbiomedata/nmdc-schema/pull/499#discussion_r1018499248
from_schema: https://w3id.org/nmdc/nmdc
structured_aliases:
  workflow_execution_id:
    literal_form: workflow_execution_id
    predicate: NARROW_SYNONYM
    contexts:
    - https://bitbucket.org/berkeleylab/jgi-jat/macros/nmdc_metadata.yaml
  data_object_id:
    literal_form: data_object_id
    predicate: NARROW_SYNONYM
    contexts:
    - https://bitbucket.org/berkeleylab/jgi-jat/macros/nmdc_metadata.yaml
rank: 1000
identifier: true
alias: id
domain_of:
- NamedThing
range: uriorcurie
required: true
pattern: ^[a-zA-Z0-9][a-zA-Z0-9_\.]+:[a-zA-Z0-9_][a-zA-Z0-9_\-\/\.,]*$