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Slot: name

A human readable label for an entity

URI: nmdc:name

Applicable Classes

Name Description Modifies Slot
CollectingBiosamplesFromSite no
MassSpectrometry Spectrometry where the sample is converted into gaseous ions which are charac... no
InformationObject Any data or knowledge that reduces uncertainty or enhances understanding abou... no
PersonValue An attribute value representing a person yes
CalibrationInformation A calibration object that is associated with a process no
SubSamplingProcess Separating a sample aliquot from the starting material for downstream activit... no
Manifest A qualified collection of DataObjects that can be analyzed together in the sa... no
DataEmitterProcess A process that generates data objects as output no
MetatranscriptomeAssembly no
MetaproteomicsAnalysis no
MetagenomeSequencing Initial sequencing activity that precedes any analysis no
ProcessedSample no
NomAnalysis no
MetabolomicsAnalysis no
AnnotatingWorkflow A WorkflowExecution whose output indicates the potential functions of genes o... no
ChemicalEntity An atom or molecule that can be represented with a chemical formula no
FiltrationProcess The process of segregation of phases; e no
MixingProcess The combining of components, particles or layers into a more homogeneous stat... no
MetatranscriptomeAnnotation no
MetatranscriptomeExpressionAnalysis A workflow process that provides expression values and read counts for gene f... no
ChromatographyConfiguration A set of parameters that define and control the actions of a chromatography p... yes
LibraryPreparation no
DissolvingProcess A mixing step where a soluble component is mixed with a liquid component no
FunctionalAnnotationTerm Abstract grouping class for any term/descriptor that can be applied to a func... no
ReadBasedTaxonomyAnalysis A workflow execution activity that performs taxonomy classification using seq... no
Biosample Biological source material which can be characterized by an experiment no
ChemicalConversionProcess A process that results in the interconversion of chemical species by a reacti... no
Pathway A pathway is a sequence of steps/reactions carried out by an organism or comm... no
Protocol no
MagsAnalysis A workflow execution activity that uses computational binning tools to group ... no
Extraction A material separation in which a desired component of an input material is se... no
MassSpectrometryConfiguration A set of parameters that define and control the actions of a mass spectrometr... yes
MetagenomeAnnotation A workflow execution activity that provides functional and structural annotat... no
ReadQcAnalysis A workflow execution activity that performs quality control on raw Illumina r... no
ChromatographicSeparationProcess The process of using a selective partitioning of the analyte or interferent b... no
Pooling physical combination of several instances of like material no
Study A study summarizes the overall goal of a research initiative and outlines the... yes
MaterialProcessing A process that takes one or more samples as inputs and generates one or more ... no
OrthologyGroup A set of genes or gene products in which all members are orthologous no
NamedThing a databased entity or concept/class no
MaterialEntity no
StorageProcess A planned process with the objective to preserve and protect material entitie... no
WorkflowExecution Represents an instance of an execution of a particular workflow no
ProtocolExecution A PlannedProces that has PlannedProcess parts no
Configuration A set of parameters that define the actions of a process and is shared among ... no
GeneProduct A molecule encoded by a gene that has an evolved function no
OntologyClass A representation of class defined in an external ontology no
Sample A sample is a material entity that can be characterized by an experiment no
DataGeneration The methods and processes used to generate omics data from a biosample or org... no
PlannedProcess no
Instrument A material entity that is designed to perform a function in a scientific inve... no
FieldResearchSite A site, outside of a laboratory, from which biosamples may be collected no
MetagenomeAssembly A workflow execution activity that converts sequencing reads into an assemble... no
DataObject An object that primarily consists of symbols that represent information yes
EnvironmentalMaterialTerm no
Site no
NucleotideSequencing A DataGeneration in which the sequence of DNA or RNA molecules is generated no

Properties

Identifier and Mapping Information

Schema Source

Mappings

Mapping Type Mapped Value

LinkML Source

name: name
description: A human readable label for an entity
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
alias: name
domain_of:
- PersonValue
- NamedThing
- Protocol
range: string