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Slot: organism count (organism_count)

Total cell count of any organism (or group of organisms) per gram, volume or area of sample, should include name of organism followed by count. The method that was used for the enumeration (e.g. qPCR, atp, mpn, etc.) Should also be provided. (example: total prokaryotes; 3.5e7 cells per ml; qpcr)

URI: MIXS:0000103

Applicable Classes

Name Description Modifies Slot
Biosample Biological source material which can be characterized by an experiment no

Properties

Identifier and Mapping Information

Annotations

property value
Expected_value organism name;measurement value;enumeration

Schema Source

Mappings

Mapping Type Mapped Value
self MIXS:0000103

LinkML Source

name: organism_count
annotations:
  Expected_value:
    tag: Expected_value
    value: organism name;measurement value;enumeration
  storage_units:
    tag: storage_units
    value: '1'
description: 'Total cell count of any organism (or group of organisms) per gram, volume
  or area of sample, should include name of organism followed by count. The method
  that was used for the enumeration (e.g. qPCR, atp, mpn, etc.) Should also be provided.
  (example: total prokaryotes; 3.5e7 cells per ml; qpcr)'
title: organism count
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
keywords:
- count
- organism
string_serialization: '{text};{float} {unit};[ATP|MPN|qPCR|other]'
slot_uri: MIXS:0000103
alias: organism_count
domain_of:
- Biosample
range: QuantityValue
multivalued: true
inlined: true
inlined_as_list: true