Skip to content

Slot: alternative_identifiers

A list of alternative identifiers for the entity.

URI: nmdc:alternative_identifiers

Inheritance

Applicable Classes

Name Description Modifies Slot
SubSamplingProcess Separating a sample aliquot from the starting material for downstream activit... no
Configuration A set of parameters that define the actions of a process and is shared among ... no
Site no
MetatranscriptomeExpressionAnalysis A workflow process that provides expression values and read counts for gene f... no
Pathway A pathway is a sequence of steps/reactions carried out by an organism or comm... no
MetagenomeAnnotation A workflow execution activity that provides functional and structural annotat... no
ChromatographyConfiguration A set of parameters that define and control the actions of a chromatography p... no
Manifest A qualified collection of DataObjects that can be analyzed together in the sa... no
AnnotatingWorkflow A WorkflowExecution whose output indicates the potential functions of genes o... no
MaterialEntity no
DataEmitterProcess A process that generates data objects as output no
MetaboliteIdentification This is used to link a metabolomics analysis workflow to a specific metabolit... no
OntologyClass A representation of class defined in an external ontology no
MetatranscriptomeAssembly no
DataGeneration The methods and processes used to generate omics data from a biosample or org... no
PlannedProcess no
InformationObject Any data or knowledge that reduces uncertainty or enhances understanding abou... no
DataObject An object that primarily consists of symbols that represent information no
CalibrationInformation A calibration object that is associated with a process no
WorkflowExecution Represents an instance of an execution of a particular workflow no
Biosample Biological source material which can be characterized by an experiment yes
DissolvingProcess A mixing step where a soluble component is mixed with a liquid component no
MaterialProcessing A process that takes one or more samples as inputs and generates one or more ... no
FunctionalAnnotationTerm Abstract grouping class for any term/descriptor that can be applied to a func... no
MetagenomeAssembly A workflow execution activity that converts sequencing reads into an assemble... no
FieldResearchSite A site, outside of a laboratory, from which biosamples may be collected no
MixingProcess The combining of components, particles or layers into a more homogeneous stat... no
MetatranscriptomeAnnotation no
MagsAnalysis A workflow execution activity that uses computational binning tools to group ... no
Extraction A material separation in which a desired component of an input material is se... no
ChromatographicSeparationProcess The process of using a selective partitioning of the analyte or interferent b... no
MetagenomeSequencing Initial sequencing activity that precedes any analysis no
MetabolomicsAnalysis no
Study A study summarizes the overall goal of a research initiative and outlines the... yes
Instrument A material entity that is designed to perform a function in a scientific inve... no
ChemicalEntity An atom or molecule that can be represented with a chemical formula no
ReadQcAnalysis A workflow execution activity that performs quality control on raw Illumina r... no
MassSpectrometryConfiguration A set of parameters that define and control the actions of a mass spectrometr... no
NucleotideSequencing A DataGeneration in which the sequence of DNA or RNA molecules is generated no
GeneProduct A molecule encoded by a gene that has an evolved function no
CollectingBiosamplesFromSite no
ProtocolExecution A PlannedProces that has PlannedProcess parts no
MetaproteomicsAnalysis no
StorageProcess A planned process with the objective to preserve and protect material entitie... no
LibraryPreparation no
NamedThing a databased entity or concept/class no
OrthologyGroup A set of genes or gene products in which all members are orthologous no
MassSpectrometry Spectrometry where the sample is converted into gaseous ions which are charac... no
Sample A sample is a material entity that can be characterized by an experiment no
NomAnalysis no
EnvironmentalMaterialTerm no
ProcessedSample no
FiltrationProcess The process of segregation of phases; e no
ChemicalConversionProcess A process that results in the interconversion of chemical species by a reacti... no
ReadBasedTaxonomyAnalysis A workflow execution activity that performs taxonomy classification using seq... no
Pooling physical combination of several instances of like material no

Properties

  • Range: Uriorcurie

  • Multivalued: True

  • Regex pattern: ^[a-zA-Z0-9][a-zA-Z0-9_\.]+:[a-zA-Z0-9_][a-zA-Z0-9_\-\/\.,\(\)\=\#]*$

Identifier and Mapping Information

Schema Source

Mappings

Mapping Type Mapped Value

LinkML Source

name: alternative_identifiers
description: A list of alternative identifiers for the entity.
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
alias: alternative_identifiers
domain_of:
- MetaboliteIdentification
- NamedThing
range: uriorcurie
multivalued: true
pattern: ^[a-zA-Z0-9][a-zA-Z0-9_\.]+:[a-zA-Z0-9_][a-zA-Z0-9_\-\/\.,\(\)\=\#]*$