Slot: classified_as
A formal classification for this entity, expressed directly as an ontology-backed class instance stored in ontology_class_set.
URI: nmdc:classified_as
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| Organism | A material entity that is a living or once-living individual | yes |
Properties
-
Range: OntologyClass
-
Multivalued: True
Comments
- Taxonomy-oriented uses (e.g. on Organism) should point to NcbiTaxon instances. OrganismSample reaches taxonomy indirectly via expected_organism.classified_as.
See Also
- https://github.com/microbiomedata/nmdc-schema/issues/2959
- https://github.com/microbiomedata/nmdc-schema/issues/3016
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/nmdc/nmdc
Mappings
| Mapping Type | Mapped Value |
|---|---|
| narrow | biolink:in_taxon |
LinkML Source
name: classified_as
description: A formal classification for this entity, expressed directly as an ontology-backed
class instance stored in ontology_class_set.
notes:
- The global range stays OntologyClass. Organism is currently the only class that
narrows classified_as to NcbiTaxon, via slot_usage. Extending that narrowing to
other classes is tracked in https://github.com/microbiomedata/nmdc-schema/issues/3016.
comments:
- Taxonomy-oriented uses (e.g. on Organism) should point to NcbiTaxon instances. OrganismSample
reaches taxonomy indirectly via expected_organism.classified_as.
from_schema: https://w3id.org/nmdc/nmdc
see_also:
- https://github.com/microbiomedata/nmdc-schema/issues/2959
- https://github.com/microbiomedata/nmdc-schema/issues/3016
narrow_mappings:
- biolink:in_taxon
rank: 1000
domain_of:
- Organism
range: OntologyClass
multivalued: true
inlined: true
inlined_as_list: true