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Slot: estimated size (estimated_size)

The estimated size of the genome prior to sequencing. Of particular importance in the sequencing of (eukaryotic) genome which could remain in draft form for a long or unspecified period

URI: MIXS:0000024

Applicable Classes

Name Description Modifies Slot
Organism A material entity that is a living or once-living individual yes

Properties

  • Range: Integer

  • Minimum Value: 1

  • Maximum Value: 100000000000

Examples

Value
None

Comments

  • JGI reports values in megabases (Mb); NMDC stores them in base pairs (bp).

Identifier and Mapping Information

Schema Source

Mappings

Mapping Type Mapped Value
self MIXS:0000024

LinkML Source

name: estimated_size
description: The estimated size of the genome prior to sequencing. Of particular importance
  in the sequencing of (eukaryotic) genome which could remain in draft form for a
  long or unspecified period
title: estimated size
notes:
- The maximum_value here (1e11 bp = 100,000 Mb) is the eukaryote ceiling from JGI
  esplims. The tighter microbe ceiling (5,000 Mb) and the category-conditional required
  rule are enforced in submission-schema via class rules on IsolateInterface, keyed
  on biosafety_mat_cat.
comments:
- JGI reports values in megabases (Mb); NMDC stores them in base pairs (bp).
examples:
- object: 300000
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
keywords:
- size
slot_uri: MIXS:0000024
domain_of:
- Organism
range: integer
minimum_value: 1
maximum_value: 100000000000