Slot: processing_institution_workflow_metadata
Information about how workflow results were generated when the processing is done by an external organziation (e.g., JGI) such as software tool name and version or pipeline name and version.
URI: nmdc:processing_institution_workflow_metadata
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| WorkflowExecution | Represents an instance of an execution of a particular workflow | no |
| MetagenomeSequencing | Initial sequencing activity that precedes any analysis | no |
| AnnotatingWorkflow | A WorkflowExecution whose output indicates the potential functions of genes o... | no |
| MetagenomeAnnotation | A workflow execution activity that provides functional and structural annotat... | no |
| MetagenomeAssembly | A workflow execution activity that converts sequencing reads into an assemble... | no |
| MetatranscriptomeAssembly | no | |
| MetatranscriptomeAnnotation | no | |
| MetatranscriptomeExpressionAnalysis | A workflow process that provides expression values and read counts for gene f... | no |
| MagsAnalysis | A workflow execution activity that uses computational binning tools to group ... | no |
| ReadQcAnalysis | A workflow execution activity that performs quality control on raw Illumina r... | no |
| ReadBasedTaxonomyAnalysis | A workflow execution activity that performs taxonomy classification using seq... | no |
| MetabolomicsAnalysis | no | |
| MetaproteomicsAnalysis | no | |
| NomAnalysis | no |
Properties
- Range: String
Examples
| Value |
|---|
| metaspades v. 3.15.2 |
| IMG Annotation Pipeline v.5.0.25 |
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/nmdc/nmdc
Mappings
| Mapping Type | Mapped Value |
|---|---|
| mappings | NCIT:C165211 |
LinkML Source
name: processing_institution_workflow_metadata
description: Information about how workflow results were generated when the processing
is done by an external organziation (e.g., JGI) such as software tool name and version
or pipeline name and version.
examples:
- value: metaspades v. 3.15.2
- value: IMG Annotation Pipeline v.5.0.25
from_schema: https://w3id.org/nmdc/nmdc
mappings:
- NCIT:C165211
rank: 1000
domain_of:
- WorkflowExecution
range: string