Slot: protein_sum_masic_abundance (DEPRECATED)
combined MS1 extracted ion chromatograms derived from MS2 spectra associated with the best protein from a given LC-MS/MS data file using the MASIC tool
URI: nmdc:protein_sum_masic_abundance
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| ProteinQuantification | This is used to link a metaproteomics analysis workflow to a specific protein | no |
Properties
- Range: Integer
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/nmdc/nmdc
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | nmdc:protein_sum_masic_abundance |
| native | nmdc:protein_sum_masic_abundance |
LinkML Source
name: protein_sum_masic_abundance
description: combined MS1 extracted ion chromatograms derived from MS2 spectra associated
with the best protein from a given LC-MS/MS data file using the MASIC tool
deprecated: not used. 2024-11 https://github.com/microbiomedata/nmdc-schema/issues/2250
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
alias: protein_sum_masic_abundance
domain_of:
- ProteinQuantification
range: integer