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Slot: protocol_link

URI: nmdc:protocol_link

Applicable Classes

Name Description Modifies Slot
DissolvingProcess A mixing step where a soluble component is mixed with a liquid component no
FiltrationProcess The process of segregation of phases; e no
DataEmitterProcess A process that generates data objects as output no
WorkflowExecution Represents an instance of an execution of a particular workflow no
MetagenomeAnnotation A workflow execution activity that provides functional and structural annotat... no
LibraryPreparation no
MetabolomicsAnalysis no
ReadQcAnalysis A workflow execution activity that performs quality control on raw Illumina r... no
MassSpectrometry Spectrometry where the sample is converted into gaseous ions which are charac... no
AnnotatingWorkflow A WorkflowExecution whose output indicates the potential functions of genes o... no
SubSamplingProcess Separating a sample aliquot from the starting material for downstream activit... no
MetatranscriptomeExpressionAnalysis A workflow process that provides expression values and read counts for gene f... no
MetagenomeSequencing Initial sequencing activity that precedes any analysis no
CollectingBiosamplesFromSite no
ReadBasedTaxonomyAnalysis A workflow execution activity that performs taxonomy classification using seq... no
ChromatographicSeparationProcess The process of using a selective partitioning of the analyte or interferent b... no
PlannedProcess no
ChemicalConversionProcess A process that results in the interconversion of chemical species by a reacti... no
MetatranscriptomeAssembly no
DataGeneration The methods and processes used to generate omics data from a biosample or org... no
ProtocolExecution A PlannedProces that has PlannedProcess parts no
MetagenomeAssembly A workflow execution activity that converts sequencing reads into an assemble... no
StorageProcess A planned process with the objective to preserve and protect material entitie... no
MetatranscriptomeAnnotation no
NucleotideSequencing A DataGeneration in which the sequence of DNA or RNA molecules is generated no
MetaproteomicsAnalysis no
Pooling physical combination of several instances of like material no
Study A study summarizes the overall goal of a research initiative and outlines the... yes
MixingProcess The combining of components, particles or layers into a more homogeneous stat... no
MagsAnalysis A workflow execution activity that uses computational binning tools to group ... no
Extraction A material separation in which a desired component of an input material is se... no
NomAnalysis no
MaterialProcessing A process that takes one or more samples as inputs and generates one or more ... no

Properties

Identifier and Mapping Information

Schema Source

Mappings

Mapping Type Mapped Value

LinkML Source

name: protocol_link
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
alias: protocol_link
domain_of:
- PlannedProcess
- Study
range: Protocol