Slot: protocol_link

Applicable Classes

Name	Description	Modifies Slot
ChromatographicSeparationProcess	The process of using a selective partitioning of the analyte or interferent b...	no
MixingProcess	The combining of components, particles or layers into a more homogeneous stat...	no
MetatranscriptomeAssembly		no
LibraryPreparation		no
FiltrationProcess	The process of segregation of phases; e	no
ChemicalConversionProcess	A process that results in the interconversion of chemical species by a reacti...	no
WorkflowExecution	Represents an instance of an execution of a particular workflow	no
Pooling	physical combination of several instances of like material	no
DataGeneration	The methods and processes used to generate omics data from a biosample or org...	no
MetabolomicsAnalysis		no
SubSamplingProcess	Separating a sample aliquot from the starting material for downstream activit...	no
Study	A study summarizes the overall goal of a research initiative and outlines the...	yes
MetagenomeAnnotation	A workflow execution activity that provides functional and structural annotat...	no
ReadBasedTaxonomyAnalysis	A workflow execution activity that performs taxonomy classification using seq...	no
DataEmitterProcess	A process that generates data objects as output	no
ChromatographyConfiguration	A set of parameters that define and control the actions of a chromatography p...	no
ReadQcAnalysis	A workflow execution activity that performs quality control on raw Illumina r...	no
MetagenomeSequencing	Initial sequencing activity that precedes any analysis	no
MassSpectrometry	Spectrometry where the sample is converted into gaseous ions which are charac...	no
MetatranscriptomeExpressionAnalysis	A workflow process that provides expression values and read counts for gene f...	no
NomAnalysis		no
MagsAnalysis	A workflow execution activity that uses computational binning tools to group ...	no
PlannedProcess		no
ProtocolExecution	A PlannedProces that has PlannedProcess parts	no
CollectingBiosamplesFromSite		no
Configuration	A set of parameters that define the actions of a process and is shared among ...	no
MetaproteomicsAnalysis		no
MetatranscriptomeAnnotation		no
MassSpectrometryConfiguration	A set of parameters that define and control the actions of a mass spectrometr...	no
Extraction	A material separation in which a desired component of an input material is se...	no
MaterialProcessing	A process that takes one or more samples as inputs and generates one or more ...	no
AnnotatingWorkflow	A WorkflowExecution whose output indicates the potential functions of genes o...	no
NucleotideSequencing	A DataGeneration in which the sequence of DNA or RNA molecules is generated	no
DissolvingProcess	A mixing step where a soluble component is mixed with a liquid component	no
StorageProcess	A planned process with the objective to preserve and protect material entitie...	no
MetagenomeAssembly	A workflow execution activity that converts sequencing reads into an assemble...	no

Properties

Range: Protocol

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/nmdc/nmdc

Mappings

Mapping Type	Mapped Value

LinkML Source

name: protocol_link
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
alias: protocol_link
domain_of:
- Configuration
- PlannedProcess
- Study
range: Protocol