Slot: protocol_link

Applicable Classes

Name	Description	Modifies Slot
DataGeneration	The methods and processes used to generate omics data from a biosample or org...	no
MaterialProcessing	A process that takes one or more samples as inputs and generates one or more ...	no
ChemicalConversionProcess	A process that results in the interconversion of chemical species by a reacti...	no
MetatranscriptomeAnnotation		no
StorageProcess	A planned process with the objective to preserve and protect material entitie...	no
MixingProcess	The combining of components, particles or layers into a more homogeneous stat...	no
Extraction	A material separation in which a desired component of an input material is se...	no
FiltrationProcess	The process of segregation of phases; e	no
Study	A study summarizes the overall goal of a research initiative and outlines the...	yes
NomAnalysis		no
DataEmitterProcess	A process that generates data objects as output	no
MetagenomeAnnotation	A workflow execution activity that provides functional and structural annotat...	no
MetagenomeSequencing	Initial sequencing activity that precedes any analysis	no
PlannedProcess		no
MetaproteomicsAnalysis		no
Configuration	A set of parameters that define the actions of a process and is shared among ...	no
Pooling	physical combination of several instances of like material	no
LibraryPreparation		no
MetatranscriptomeExpressionAnalysis	A workflow process that provides expression values and read counts for gene f...	no
ChromatographicSeparationProcess	The process of using a selective partitioning of the analyte or interferent b...	no
SubSamplingProcess	Separating a sample aliquot from the starting material for downstream activit...	no
DissolvingProcess	A mixing step where a soluble component is mixed with a liquid component	no
CollectingBiosamplesFromSite		no
ReadBasedTaxonomyAnalysis	A workflow execution activity that performs taxonomy classification using seq...	no
MassSpectrometryConfiguration	A set of parameters that define and control the actions of a mass spectrometr...	no
AnnotatingWorkflow	A WorkflowExecution whose output indicates the potential functions of genes o...	no
NucleotideSequencing	A DataGeneration in which the sequence of DNA or RNA molecules is generated	no
MassSpectrometry	Spectrometry where the sample is converted into gaseous ions which are charac...	no
ReadQcAnalysis	A workflow execution activity that performs quality control on raw Illumina r...	no
MetagenomeAssembly	A workflow execution activity that converts sequencing reads into an assemble...	no
MagsAnalysis	A workflow execution activity that uses computational binning tools to group ...	no
MetabolomicsAnalysis		no
ChromatographyConfiguration	A set of parameters that define and control the actions of a chromatography p...	no
WorkflowExecution	Represents an instance of an execution of a particular workflow	no
ProtocolExecution	A PlannedProces that has PlannedProcess parts	no
MetatranscriptomeAssembly		no

Properties

Range: Protocol

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/nmdc/nmdc

Mappings

Mapping Type	Mapped Value

LinkML Source

name: protocol_link
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
alias: protocol_link
domain_of:
- Configuration
- PlannedProcess
- Study
range: Protocol