Slot: protocol_link

Applicable Classes

Name	Description	Modifies Slot
MetatranscriptomeAnnotation		no
MetagenomeAnnotation	A workflow execution activity that provides functional and structural annotat...	no
SubSamplingProcess	Separating a sample aliquot from the starting material for downstream activit...	no
ReadBasedTaxonomyAnalysis	A workflow execution activity that performs taxonomy classification using seq...	no
StorageProcess	A planned process with the objective to preserve and protect material entitie...	no
MetabolomicsAnalysis		no
NomAnalysis		no
DissolvingProcess	A mixing step where a soluble component is mixed with a liquid component	no
FiltrationProcess	The process of segregation of phases; e	no
ProtocolExecution	A PlannedProces that has PlannedProcess parts	no
DataGeneration	The methods and processes used to generate omics data from a biosample or org...	no
LibraryPreparation		no
CollectingBiosamplesFromSite		no
MetaproteomicsAnalysis		no
PlannedProcess		no
Extraction	A material separation in which a desired component of an input material is se...	no
MassSpectrometry	Spectrometry where the sample is converted into gaseous ions which are charac...	no
MaterialProcessing	A process that takes one or more samples as inputs and generates one or more ...	no
Pooling	physical combination of several instances of like material	no
MixingProcess	The combining of components, particles or layers into a more homogeneous stat...	no
ChromatographicSeparationProcess	The process of using a selective partitioning of the analyte or interferent b...	no
WorkflowExecution	Represents an instance of an execution of a particular workflow	no
ReadQcAnalysis	A workflow execution activity that performs quality control on raw Illumina r...	no
MagsAnalysis	A workflow execution activity that uses computational binning tools to group ...	no
MetagenomeAssembly	A workflow execution activity that converts sequencing reads into an assemble...	no
MetatranscriptomeAssembly		no
ChemicalConversionProcess	A process that results in the interconversion of chemical species by a reacti...	no
Study	A study summarizes the overall goal of a research initiative and outlines the...	yes
MetatranscriptomeExpressionAnalysis	A workflow process that provides expression values and read counts for gene f...	no
MetagenomeSequencing	Initial sequencing activity that precedes any analysis	no
NucleotideSequencing	A DataGeneration in which the sequence of DNA or RNA molecules is generated	no

Properties

Range: Protocol

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/nmdc/nmdc

Mappings

Mapping Type	Mapped Value
self	nmdc:protocol_link
native	nmdc:protocol_link

LinkML Source

name: protocol_link
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
alias: protocol_link
domain_of:
- PlannedProcess
- Study
range: Protocol