Slot: qc_comment

Slot to store additional comments about laboratory or workflow output. For workflow output it may describe the particular workflow stage that failed. (ie Failed at call-stage due to a malformed fastq file).

URI: nmdc:qc_comment

Applicable Classes

Name	Description	Modifies Slot
MetatranscriptomeExpressionAnalysis	A workflow process that provides expression values and read counts for gene f...	no
DissolvingProcess	A mixing step where a soluble component is mixed with a liquid component	no
ProtocolExecution	A PlannedProces that has PlannedProcess parts	no
MetagenomeSequencing	Initial sequencing activity that precedes any analysis	no
ChemicalConversionProcess	A process that results in the interconversion of chemical species by a reacti...	no
MetagenomeAssembly	A workflow execution activity that converts sequencing reads into an assemble...	no
LibraryPreparation		no
ReadBasedTaxonomyAnalysis	A workflow execution activity that performs taxonomy classification using seq...	no
NucleotideSequencing	A DataGeneration in which the sequence of DNA or RNA molecules is generated	no
MassSpectrometry	Spectrometry where the sample is converted into gaseous ions which are charac...	no
FiltrationProcess	The process of segregation of phases; e	no
StorageProcess	A planned process with the objective to preserve and protect material entitie...	no
MagsAnalysis	A workflow execution activity that uses computational binning tools to group ...	no
MetabolomicsAnalysis		no
MetaproteomicsAnalysis		no
MixingProcess	The combining of components, particles or layers into a more homogeneous stat...	no
CollectingBiosamplesFromSite		no
DataGeneration	The methods and processes used to generate omics data from a biosample or org...	no
MaterialProcessing	A process that takes one or more samples as inputs and generates one or more ...	no
MetatranscriptomeAnnotation		no
DataEmitterProcess	A process that generates data objects as output	no
WorkflowExecution	Represents an instance of an execution of a particular workflow	no
PlannedProcess		no
AnnotatingWorkflow	A WorkflowExecution whose output indicates the potential functions of genes o...	no
MetagenomeAnnotation	A workflow execution activity that provides functional and structural annotat...	no
Extraction	A material separation in which a desired component of an input material is se...	no
ChromatographicSeparationProcess	The process of using a selective partitioning of the analyte or interferent b...	no
NomAnalysis		no
MetatranscriptomeAssembly		no
SubSamplingProcess	Separating a sample aliquot from the starting material for downstream activit...	no
ReadQcAnalysis	A workflow execution activity that performs quality control on raw Illumina r...	no
Pooling	physical combination of several instances of like material	no

Properties

Range: String

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/nmdc/nmdc

Mappings

Mapping Type	Mapped Value

LinkML Source

name: qc_comment
description: Slot to store additional comments about laboratory or workflow output.
  For workflow output it may describe the particular workflow stage that failed. (ie
  Failed at call-stage due to a malformed fastq file).
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
alias: qc_comment
domain_of:
- PlannedProcess
range: string