Slot: qc_comment

Slot to store additional comments about laboratory or workflow output. For workflow output it may describe the particular workflow stage that failed. (ie Failed at call-stage due to a malformed fastq file).

URI: nmdc:qc_comment

Applicable Classes

Name	Description	Modifies Slot
DissolvingProcess	A mixing step where a soluble component is mixed with a liquid component	no
MetagenomeSequencing	Initial sequencing activity that precedes any analysis	no
MagsAnalysis	A workflow execution activity that uses computational binning tools to group ...	no
MetaproteomicsAnalysis		no
MetatranscriptomeAssembly		no
Pooling	physical combination of several instances of like material	no
StorageProcess	A planned process with the objective to preserve and protect material entitie...	no
MixingProcess	The combining of components, particles or layers into a more homogeneous stat...	no
NomAnalysis		no
MetabolomicsAnalysis		no
ReadBasedTaxonomyAnalysis	A workflow execution activity that performs taxonomy classification using seq...	no
FiltrationProcess	The process of segregation of phases; e	no
AnnotatingWorkflow	A WorkflowExecution whose output indicates the potential functions of genes o...	no
ChromatographicSeparationProcess	The process of using a selective partitioning of the analyte or interferent b...	no
MetatranscriptomeAnnotation		no
Extraction	A material separation in which a desired component of an input material is se...	no
DataEmitterProcess	A process that generates data objects as output	no
LibraryPreparation		no
ReadQcAnalysis	A workflow execution activity that performs quality control on raw Illumina r...	no
SubSamplingProcess	Separating a sample aliquot from the starting material for downstream activit...	no
NucleotideSequencing	A DataGeneration in which the sequence of DNA or RNA molecules is generated	no
WorkflowExecution	Represents an instance of an execution of a particular workflow	no
DataGeneration	The methods and processes used to generate omics data from a biosample or org...	no
MetatranscriptomeExpressionAnalysis	A workflow process that provides expression values and read counts for gene f...	no
MaterialProcessing	A process that takes one or more samples as inputs and generates one or more ...	no
PlannedProcess		no
MassSpectrometry	Spectrometry where the sample is converted into gaseous ions which are charac...	no
CollectingBiosamplesFromSite		no
ProtocolExecution	A PlannedProces that has PlannedProcess parts	no
ChemicalConversionProcess	A process that results in the interconversion of chemical species by a reacti...	no
MetagenomeAnnotation	A workflow execution activity that provides functional and structural annotat...	no
MetagenomeAssembly	A workflow execution activity that converts sequencing reads into an assemble...	no

Properties

Range: String

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/nmdc/nmdc

Mappings

Mapping Type	Mapped Value

LinkML Source

name: qc_comment
description: Slot to store additional comments about laboratory or workflow output.
  For workflow output it may describe the particular workflow stage that failed. (ie
  Failed at call-stage due to a malformed fastq file).
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
alias: qc_comment
domain_of:
- PlannedProcess
range: string