Slot: RNA plate position (rna_cont_well)

Applicable Classes

Name	Description	Modifies Slot
Biosample	Biological source material which can be characterized by an experiment	no

Properties

Range: String
Recommended: True
Regex pattern: ^(?!A1$|A12$|H1$|H12$)(([A-H][1-9])|([A-H]1[0-2]))$

Examples

Value
B2

Comments

Required when 'plate' is selected for container type.
Leave blank if the sample will be shipped in a tube.
JGI will not process samples in corner wells, so A1, A12, H1 and H12 will not pass validation.
For partial plates, fill by columns, like B1-G1,A2-H2,A3-D3 (NOT A2-A11,B1-B8).

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/nmdc/nmdc

Mappings

Mapping Type	Mapped Value
self	nmdc:rna_cont_well
native	nmdc:rna_cont_well

LinkML Source

name: rna_cont_well
title: RNA plate position
comments:
- Required when 'plate' is selected for container type.
- Leave blank if the sample will be shipped in a tube.
- JGI will not process samples in corner wells, so A1, A12, H1 and H12 will not pass
  validation.
- For partial plates, fill by columns, like B1-G1,A2-H2,A3-D3 (NOT A2-A11,B1-B8).
examples:
- value: B2
from_schema: https://w3id.org/nmdc/nmdc
rank: 11
string_serialization: '{96 well plate pos}'
alias: rna_cont_well
domain_of:
- Biosample
slot_group: JGI-Metatranscriptomics
range: string
recommended: true
pattern: ^(?!A1$|A12$|H1$|H12$)(([A-H][1-9])|([A-H]1[0-2]))$